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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180782 (70 seq.)
>W1711144050
LVHW01000001
Gammaproteobacteria
Pantoea agglomerans [LVHW]
2694786
2694702
-
Leu
CAA
[ENA]
¡û
>W1711223389
LXSW01000077
Gammaproteobacteria
Pantoea agglomerans pv. betae [LXSW]
47811
47727
-
Leu
CAA
[ENA]
¡û
>W1711223443
LXSX01000022
Gammaproteobacteria
Pantoea agglomerans pv. gypsophilae [LXSX]
178680
178596
-
Leu
CAA
[ENA]
¡û
>W1711745676
MUJJ01000005
Gammaproteobacteria
Pantoea vagans [MUJJ]
67928
67844
-
Leu
CAA
[ENA]
¡û
>W1712070500
NGNU01000004
Gammaproteobacteria
Pantoea agglomerans [NGNU]
19058
19142
+
Leu
CAA
[ENA]
¡û
>W1712070504
NGNU01000008
Gammaproteobacteria
Pantoea agglomerans [NGNU]
223551
223467
-
Leu
CAA
[ENA]
¡û
>C171052838
CP016889
Gammaproteobacteria
Pantoea agglomerans C410P1 [CP016889]
2122794
2122878
+
Leu
CAA
-
¡û
>W131063523
ANKX01000040
Gammaproteobacteria
Pantoea agglomerans 299R [ANKX]
51038
50954
-
Leu
CAA
[ENA]
¡û
>W141071684
ASJI01000022
Gammaproteobacteria
Pantoea agglomerans Tx10 [ASJI]
282056
282140
+
Leu
CAA
[ENA]
¡û
>W141158542
AXOF01000033
Gammaproteobacteria
Pantoea agglomerans Eh318 [AXOF]
292677
292761
+
Leu
CAA
[ENA]
¡û
>WENV170700102
LIDZ01002273
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
19563
19647
+
Leu
CAA
[ENA]
¢þ
>WENV170700176
LIDZ01005758
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
6544
6628
+
Leu
CAA
[ENA]
¢þ
>W141466727
JFOK01000020
Gammaproteobacteria
Pantoea agglomerans [JFOK]
284777
284693
-
Leu
CAA
[ENA]
¡û
>C181047017
CP020820
Gammaproteobacteria
Pantoea vagans FBS135 [CP020820]
3512852
3512768
-
Leu
CAA
-
¡û
>C181164404
CP028349
Gammaproteobacteria
Pantoea vagans PV989 [CP028349]
1020459
1020543
+
Leu
CAA
-
¡û
>C191077115
CP031649
Gammaproteobacteria
Pantoea agglomerans TH81 [CP031649]
3620083
3619999
-
Leu
CAA
-
¡û
>C191120255
CP034148
Gammaproteobacteria
Pantoea agglomerans L15 [CP034148]
529510
529594
+
Leu
CAA
-
¡û
>C191126182
CP034469
Gammaproteobacteria
Pantoea agglomerans CFSAN047153 [CP034469]
558963
559047
+
Leu
CAA
-
¡û
>C191126253
CP034474
Gammaproteobacteria
Pantoea agglomerans CFSAN047154 [CP034474]
331755
331839
+
Leu
CAA
-
¡û
>C191155850
CP037950
Gammaproteobacteria
Erwinia sp. QL-Z3 [CP037950]
765663
765579
-
Leu
CAA
-
¡û
>C191162327
CP038853
Gammaproteobacteria
Pantoea vagans LMG 24199 [CP038853]
3524798
3524714
-
Leu
CAA
-
¡û
>W141728257
JNGC01000001
Gammaproteobacteria
Pantoea agglomerans [JNGC]
296777
296861
+
Leu
CAA
[ENA]
¡û
>W141753850
JNVA01000033
Gammaproteobacteria
Pantoea agglomerans [JNVA]
7279
7195
-
Leu
CAA
[ENA]
¡û
>W141807699
JPOT01000003
Gammaproteobacteria
Pantoea agglomerans [JPOT]
285640
285724
+
Leu
CAA
[ENA]
¡û
>W141821420
JQNO01000001
Gammaproteobacteria
Pantoea sp. 9140 [JQNO]
230719
230803
+
Leu
CAA
[ENA]
¡û
>W1910502030
FYAZ01000007
Gammaproteobacteria
Pantoea agglomerans [FYAZ]
33512
33428
-
Leu
CAA
[ENA]
¡û
>W1910910485
NHAS01000007
Gammaproteobacteria
Pantoea agglomerans JM1 [NHAS]
289100
289016
-
Leu
CAA
[ENA]
¡û
>W1911219310
NRSO01000001
Gammaproteobacteria
Pantoea vagans TYU1 [NRSO]
280051
279967
-
Leu
CAA
[ENA]
¡û
>W1911568647
PCQJ01000011
Gammaproteobacteria
Erwinia billingiae MYb121 [PCQJ]
139082
139166
+
Leu
CAA
[ENA]
¡û
>W1911573794
PDEG01000003
Gammaproteobacteria
Pantoea agglomerans FDAARGOS_407 [PDEG]
1830845
1830761
-
Leu
CAA
[ENA]
¡û
>W1911671109
QFZW01000005
Gammaproteobacteria
Pantoea agglomerans CFBP13505 [QFZW]
56271
56187
-
Leu
CAA
[ENA]
¡û
>W1911672088
QGAM01000031
Gammaproteobacteria
Pantoea agglomerans CFBP13532 [QGAM]
30827
30911
+
Leu
CAA
[ENA]
¡û
>W1810181980
PJZH01000003
Gammaproteobacteria
Chimaeribacter coloradensis 2016Iso4 [PJZH]
154964
155048
+
Leu
CAA
[ENA]
¡û
>W1810325570
PUEK01000003
Gammaproteobacteria
Pantoea ananatis MHSD5 [PUEK]
283963
284047
+
Leu
CAA
[ENA]
¡û
>W1810597313
QGHE01000005
Gammaproteobacteria
Pantoea agglomerans PNG 92-11 [QGHE]
32988
32904
-
Leu
CAA
[ENA]
¡û
>W1810629126
QICZ01000001
Gammaproteobacteria
Pantoea sp. JKS000250 [QICZ]
2766432
2766515
+
Leu
CAA
[ENA]
¡û
>W1810686196
QLAA01000004
Gammaproteobacteria
Pantoea agglomerans Bl3 [QLAA]
284447
284531
+
Leu
CAA
[ENA]
¡û
>W1810783628
QQXH01000008
Gammaproteobacteria
Pantoea agglomerans BD 1212 [QQXH]
4491
4407
-
Leu
CAA
[ENA]
¡û
>W1810783669
QQXI01000057
Gammaproteobacteria
Pantoea agglomerans BD 1274 [QQXI]
4089
4005
-
Leu
CAA
[ENA]
¡û
>W1510093045
CEFP01000005
Gammaproteobacteria
Pantoea vagans PaVv11 [CEFP]
285494
285578
+
Leu
CAA
[ENA]
¡û
>W1510093511
CEGN01000009
Gammaproteobacteria
Pantoea vagans PaVv9 [CEGN]
200459
200375
-
Leu
CAA
[ENA]
¡û
>W1510093538
CEGN01000021
Gammaproteobacteria
Pantoea vagans PaVv9 [CEGN]
30620
30704
+
Leu
CAA
[ENA]
¡û
>W1510093539
CEGN01000021
Gammaproteobacteria
Pantoea vagans PaVv9 [CEGN]
30726
30810
+
Leu
CAA
[ENA]
¡û
>W1510100310
CEMW01000009
Gammaproteobacteria
Pantoea vagans PaVv7 [CEMW]
200459
200375
-
Leu
CAA
[ENA]
¡û
>W1510100337
CEMW01000021
Gammaproteobacteria
Pantoea vagans PaVv7 [CEMW]
30620
30704
+
Leu
CAA
[ENA]
¡û
>W1510100338
CEMW01000021
Gammaproteobacteria
Pantoea vagans PaVv7 [CEMW]
30726
30810
+
Leu
CAA
[ENA]
¡û
>W10126812
AEDL01000004
Gammaproteobacteria
Pantoea sp. aB [AEDL]
147681
147765
+
Leu
CAA
[ENA]
¡û
>W1511304372
JPKP01000001
Gammaproteobacteria
Pantoea vagans MP7 [JPKP]
147610
147694
+
Leu
CAA
[ENA]
¡û
>W1511304502
JPKQ01000012
Gammaproteobacteria
Pantoea agglomerans MP2 [JPKQ]
482878
482962
+
Leu
CAA
[ENA]
¡û
>C11118268
CP002206
Gammaproteobacteria
Pantoea vagans C9-1 [CP002206]
3994249
3994333
+
Leu
CAA
[Ensembl]
¡û
>W1511358112
JRWU01000004
Gammaproteobacteria
Rouxiella chamberiensis 130333 [JRWU]
178095
178179
+
Leu
CAA
[ENA]
¡û
>W1511387437
JSUT01000002
Gammaproteobacteria
Pantoea sp. MBLJ3 [JSUT]
273447
273363
-
Leu
CAA
[ENA]
¡û
>W11126927
ADWZ01000005
Gammaproteobacteria
Pantoea agglomerans SL1_M5 [ADWZ]
51136
51052
-
Leu
CAA
[ENA]
¡û
>W1511483285
JWLQ01000005
Gammaproteobacteria
Pantoea agglomerans LMAE-2 [JWLQ]
23587
23503
-
Leu
CAA
[ENA]
¡û
>W11134073
AEDL01000004
Gammaproteobacteria
Pantoea sp. aB [AEDL]
147681
147765
+
Leu
CAA
[ENA]
¡û
>W1511685942
LFQL01000011
Gammaproteobacteria
Pantoea vagans ZBG6 [LFQL]
25761
25677
-
Leu
CAA
[ENA]
¡û
>C121016315
FP236843
Gammaproteobacteria
Erwinia billingiae Eb661 [FP236843]
4418096
4418012
-
Leu
CAA
[Ensembl]
¡û
>C161066721
CP014129
Gammaproteobacteria
Pantoea vagans FDAARGOS_160 [CP014129]
749910
749994
+
Leu
CAA
[Ensembl]
¡û
>W1610076815
BCZA01000007
Gammaproteobacteria
Pantoea agglomerans NBRC 102470 [BCZA]
289417
289501
+
Leu
CAA
[ENA]
¡û
>W121123774
BAEF01000009
Gammaproteobacteria
Pantoea agglomerans IG1 [BAEF]
123848
123764
-
Leu
CAA
[ENA]
¡û
>W1610460996
FKKH01000001
Gammaproteobacteria
Pantoea sp. 9133 [FKKH]
586430
586346
-
Leu
CAA
[ENA]
¡û
>W1610631670
LIME01000016
Gammaproteobacteria
Pantoea agglomerans [LIME]
286360
286444
+
Leu
CAA
[ENA]
¡û
>W1610955058
LVHW01000001
Gammaproteobacteria
Pantoea agglomerans [LVHW]
2694786
2694702
-
Leu
CAA
[ENA]
¡û
>W1611007760
LXSW01000077
Gammaproteobacteria
Pantoea agglomerans pv. betae [LXSW]
47811
47727
-
Leu
CAA
[ENA]
¡û
>W1611007814
LXSX01000022
Gammaproteobacteria
Pantoea agglomerans pv. gypsophilae [LXSX]
178680
178596
-
Leu
CAA
[ENA]
¡û
>W1710074504
BCZA01000007
Gammaproteobacteria
Pantoea agglomerans NBRC 102470 [BCZA]
289417
289501
+
Leu
CAA
[ENA]
¡û
>W1710570598
FOVG01000002
Gammaproteobacteria
Pantoea varia OV426 [FOVG]
274438
274522
+
Leu
CAA
[ENA]
¡û
>W1710600313
FUWI01000004
Gammaproteobacteria
Pantoea eucalypti agglomerans [FUWI]
288193
288109
-
Leu
CAA
[ENA]
¡û
>W1710754866
LHXI01000016
Gammaproteobacteria
Erwinia billingiae [LHXI]
278400
278316
-
Leu
CAA
[ENA]
¡û
>W1710764485
LIME01000016
Gammaproteobacteria
Pantoea agglomerans [LIME]
286360
286444
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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