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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180785 (102 seq.)
>W1711090905
LTBA01000036
Bacillota
Clostridium tepidiprofundi DSM 19306 [LTBA]
4413
4489
+
Arg
TCT
[ENA]
¡û
>W1711664673
MRAD01000006
Bacillota
Clostridium tepidum DSM 18688 [MRAD]
376
300
-
Arg
TCT
[ENA]
¡û
>W1711664704
MRAD01000014
Bacillota
Clostridium tepidum DSM 18688 [MRAD]
169
245
+
Arg
TCT
[ENA]
¡û
>W1711664737
MRAD01000043
Bacillota
Clostridium tepidum DSM 18688 [MRAD]
131
55
-
Arg
TCT
[ENA]
¡û
>W1711664740
MRAD01000047
Bacillota
Clostridium tepidum DSM 18688 [MRAD]
466
390
-
Arg
TCT
[ENA]
¡û
>W1711664781
MRAE01000023
Bacillota
Clostridium tepidum IEH 97212 [MRAE]
376
300
-
Arg
TCT
[ENA]
¡û
>W1711664791
MRAE01000024
Bacillota
Clostridium tepidum IEH 97212 [MRAE]
565
641
+
Arg
TCT
[ENA]
¡û
>W1711664821
MRAE01000124
Bacillota
Clostridium tepidum IEH 97212 [MRAE]
466
390
-
Arg
TCT
[ENA]
¡û
>C007082
AE015927
Bacillota
Clostridium tetani E88 Massachusetts [AE015927]
2524175
2524099
-
Arg
TCT
[Ensembl]
¡û
>WENV182961408
OKWK01005700
[OKWK] human gut metagenome; stool
131
55
-
Arg
TCT
[ENA]
¢þ
>WENV170563436
CZCB01018115
[CZCB] anaerobic digester metagenome; anaerobic digester
3396
3321
-
Arg
TCT
[ENA]
¢þ
>C181136095
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
44058
44134
+
Arg
TCT
-
¡û
>C181136107
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
667064
667140
+
Arg
TCT
-
¡û
>C181136112
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
667584
667660
+
Arg
TCT
-
¡û
>C181136121
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
668459
668535
+
Arg
TCT
-
¡û
>C181136125
CP026600
Bacillota
Clostridiaceae bacterium 14S0207 [CP026600]
668799
668875
+
Arg
TCT
-
¡û
>C181159863
CP027782
Bacillota
Clostridium tetani Mfbjulcb2 [CP027782]
2472469
2472545
+
Arg
TCT
-
¡û
>C181226469
LT906477
Bacillota
Clostridium cochlearium NCTC13027 [LT906477]
2037589
2037513
-
Arg
TCT
-
¡û
>C181226476
LT906477
Bacillota
Clostridium cochlearium NCTC13027 [LT906477]
2036991
2036915
-
Arg
TCT
-
¡û
>C181226480
LT906477
Bacillota
Clostridium cochlearium NCTC13027 [LT906477]
2036599
2036523
-
Arg
TCT
-
¡û
>C191106431
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
2308215
2308139
-
Arg
TCT
-
¡û
>C191106438
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
2307519
2307443
-
Arg
TCT
-
¡û
>C191106442
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
2307184
2307108
-
Arg
TCT
-
¡û
>C191222051
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
50860
50936
+
Arg
TCT
-
¡û
>C191222063
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
735813
735889
+
Arg
TCT
-
¡û
>C191222072
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
736667
736743
+
Arg
TCT
-
¡û
>C191222078
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
737253
737329
+
Arg
TCT
-
¡û
>C191222082
LR590481
Bacillota
Hathewaya histolytica NCTC503 [LR590481]
737601
737677
+
Arg
TCT
-
¡û
>W141820384
JQMW01000009
Bacillota
Clostridium sp. KNHs214 [JQMW]
45262
45338
+
Arg
TCT
[ENA]
¡û
>W141820392
JQMW01000009
Bacillota
Clostridium sp. KNHs214 [JQMW]
45929
46005
+
Arg
TCT
[ENA]
¡û
>W141820396
JQMW01000009
Bacillota
Clostridium sp. KNHs214 [JQMW]
46271
46347
+
Arg
TCT
[ENA]
¡û
>W141820419
JQMW01000011
Bacillota
Clostridium sp. KNHs214 [JQMW]
1329530
1329606
+
Arg
TCT
[ENA]
¡û
>W1910498565
FXWX01000024
Bacillota
Haloimpatiens massiliensis Mt13 [FXWX]
114399
114475
+
Arg
TCT
[ENA]
¡û
>W1910498595
FXWX01000028
Bacillota
Haloimpatiens massiliensis Mt13 [FXWX]
1558377
1558453
+
Arg
TCT
[ENA]
¡û
>W1910498603
FXWX01000028
Bacillota
Haloimpatiens massiliensis Mt13 [FXWX]
1559042
1559118
+
Arg
TCT
[ENA]
¡û
>W1910498607
FXWX01000028
Bacillota
Haloimpatiens massiliensis Mt13 [FXWX]
1559387
1559463
+
Arg
TCT
[ENA]
¡û
>W1911694090
QMAN01000039
Bacillota
Clostridium tetani 1337 [QMAN]
157
81
-
Arg
TCT
[ENA]
¡û
>W1911694122
QMAO01000013
Bacillota
Clostridium tetani 778.17 [QMAO]
284016
283940
-
Arg
TCT
[ENA]
¡û
>W1911694129
QMAO01000013
Bacillota
Clostridium tetani 778.17 [QMAO]
283407
283331
-
Arg
TCT
[ENA]
¡û
>W1911694133
QMAO01000013
Bacillota
Clostridium tetani 778.17 [QMAO]
283014
282938
-
Arg
TCT
[ENA]
¡û
>W1911694193
QMAP01000017
Bacillota
Clostridium tetani 2017.061 [QMAP]
278
202
-
Arg
TCT
[ENA]
¡û
>W1911694207
QMAP01000029
Bacillota
Clostridium tetani 2017.061 [QMAP]
634
558
-
Arg
TCT
[ENA]
¡û
>W1911694211
QMAP01000029
Bacillota
Clostridium tetani 2017.061 [QMAP]
243
167
-
Arg
TCT
[ENA]
¡û
>W1911694257
QMAQ01000039
Bacillota
Clostridium tetani 202.15 [QMAQ]
39617
39693
+
Arg
TCT
[ENA]
¡û
>W1911694278
QMAR01000009
Bacillota
Clostridium tetani 157.15 [QMAR]
693
617
-
Arg
TCT
[ENA]
¡û
>W1911694355
QMAS01000023
Bacillota
Clostridium tetani 89.12 [QMAS]
39613
39689
+
Arg
TCT
[ENA]
¡û
>W1911694362
QMAS01000023
Bacillota
Clostridium tetani 89.12 [QMAS]
40224
40300
+
Arg
TCT
[ENA]
¡û
>W1911694366
QMAS01000023
Bacillota
Clostridium tetani 89.12 [QMAS]
40617
40693
+
Arg
TCT
[ENA]
¡û
>W1911694405
QMAT01000001
Bacillota
Clostridium tetani 46.1.08 [QMAT]
39613
39689
+
Arg
TCT
[ENA]
¡û
>W1911694494
QMAU01000015
Bacillota
Clostridium tetani 63.05 [QMAU]
37743
37819
+
Arg
TCT
[ENA]
¡û
>W1911694517
QMAU01000056
Bacillota
Clostridium tetani 63.05 [QMAU]
182
258
+
Arg
TCT
[ENA]
¡û
>W1911694521
QMAU01000057
Bacillota
Clostridium tetani 63.05 [QMAU]
19
95
+
Arg
TCT
[ENA]
¡û
>W1911694553
QMAV01000022
Bacillota
Clostridium tetani 358.99 [QMAV]
39617
39693
+
Arg
TCT
[ENA]
¡û
>W1911694565
QMAV01000049
Bacillota
Clostridium tetani 358.99 [QMAV]
836
760
-
Arg
TCT
[ENA]
¡û
>W1911694569
QMAV01000049
Bacillota
Clostridium tetani 358.99 [QMAV]
443
367
-
Arg
TCT
[ENA]
¡û
>W1911694608
QMAW01000018
Bacillota
Clostridium tetani 75.97 [QMAW]
39613
39689
+
Arg
TCT
[ENA]
¡û
>W1911694622
QMAW01000037
Bacillota
Clostridium tetani 75.97 [QMAW]
636
560
-
Arg
TCT
[ENA]
¡û
>W1911694626
QMAW01000037
Bacillota
Clostridium tetani 75.97 [QMAW]
243
167
-
Arg
TCT
[ENA]
¡û
>W1911694668
QMAX01000017
Bacillota
Clostridium tetani 407.86 [QMAX]
39613
39689
+
Arg
TCT
[ENA]
¡û
>W1911694682
QMAX01000035
Bacillota
Clostridium tetani 407.86 [QMAX]
636
560
-
Arg
TCT
[ENA]
¡û
>W1911694686
QMAX01000035
Bacillota
Clostridium tetani 407.86 [QMAX]
243
167
-
Arg
TCT
[ENA]
¡û
>W1911694731
QMAY01000015
Bacillota
Clostridium tetani 641.84 [QMAY]
39498
39574
+
Arg
TCT
[ENA]
¡û
>W1911694745
QMAY01000028
Bacillota
Clostridium tetani 641.84 [QMAY]
636
560
-
Arg
TCT
[ENA]
¡û
>W1911694749
QMAY01000028
Bacillota
Clostridium tetani 641.84 [QMAY]
243
167
-
Arg
TCT
[ENA]
¡û
>W1911694785
QMAZ01000022
Bacillota
Clostridium tetani 132CV [QMAZ]
191980
191904
-
Arg
TCT
[ENA]
¡û
>W1911694853
QMBA01000013
Bacillota
Clostridium tetani 3582 [QMBA]
52273
52349
+
Arg
TCT
[ENA]
¡û
>W1911694913
QMBB01000014
Bacillota
Clostridium tetani TMB2 [QMBB]
39686
39762
+
Arg
TCT
[ENA]
¡û
>W1911694923
QMBB01000022
Bacillota
Clostridium tetani TMB2 [QMBB]
13822
13746
-
Arg
TCT
[ENA]
¡û
>W1911694968
QMBC01000015
Bacillota
Clostridium tetani COR1 [QMBC]
157
81
-
Arg
TCT
[ENA]
¡û
>W1911694982
QMBC01000038
Bacillota
Clostridium tetani COR1 [QMBC]
636
560
-
Arg
TCT
[ENA]
¡û
>W1911694986
QMBC01000038
Bacillota
Clostridium tetani COR1 [QMBC]
243
167
-
Arg
TCT
[ENA]
¡û
>W1911695033
QMBD01000020
Bacillota
Clostridium tetani B4 [QMBD]
1247
1171
-
Arg
TCT
[ENA]
¡û
>W1911695040
QMBD01000020
Bacillota
Clostridium tetani B4 [QMBD]
636
560
-
Arg
TCT
[ENA]
¡û
>W1911695044
QMBD01000020
Bacillota
Clostridium tetani B4 [QMBD]
243
167
-
Arg
TCT
[ENA]
¡û
>W1911695096
QMBE01000021
Bacillota
Clostridium tetani 512-15 [QMBE]
90741
90665
-
Arg
TCT
[ENA]
¡û
>W1911695105
QMBE01000021
Bacillota
Clostridium tetani 512-15 [QMBE]
89811
89735
-
Arg
TCT
[ENA]
¡û
>W1911695166
QMBF01000019
Bacillota
Clostridium tetani 329 [QMBF]
23039
23115
+
Arg
TCT
[ENA]
¡û
>W1911695171
QMBF01000038
Bacillota
Clostridium tetani 329 [QMBF]
636
560
-
Arg
TCT
[ENA]
¡û
>W1911695175
QMBF01000038
Bacillota
Clostridium tetani 329 [QMBF]
243
167
-
Arg
TCT
[ENA]
¡û
>W1911695217
QMBG01000022
Bacillota
Clostridium tetani 1240 [QMBG]
157
81
-
Arg
TCT
[ENA]
¡û
>W1911695230
QMBG01000042
Bacillota
Clostridium tetani 1240 [QMBG]
636
560
-
Arg
TCT
[ENA]
¡û
>W1911695234
QMBG01000042
Bacillota
Clostridium tetani 1240 [QMBG]
243
167
-
Arg
TCT
[ENA]
¡û
>W1911695274
QMBH01000015
Bacillota
Clostridium tetani 1586-Z1 [QMBH]
371034
370958
-
Arg
TCT
[ENA]
¡û
>W1911695321
QMBI01000021
Bacillota
Clostridium tetani 1586-U1 [QMBI]
312
388
+
Arg
TCT
[ENA]
¡û
>W1911695353
QMBI01000034
Bacillota
Clostridium tetani 1586-U1 [QMBI]
39613
39689
+
Arg
TCT
[ENA]
¡û
>W1911695373
QMBJ01000015
Bacillota
Clostridium tetani 4784A [QMBJ]
39613
39689
+
Arg
TCT
[ENA]
¡û
>W1911695420
QMBK01000009
Bacillota
Clostridium tetani Strain 3 [QMBK]
39663
39739
+
Arg
TCT
[ENA]
¡û
>W1911695466
QMBL01000002
Bacillota
Clostridium tetani Harvard [QMBL]
39613
39689
+
Arg
TCT
[ENA]
¡û
>W1911696425
QMDR01000044
Bacillota
Clostridium tetani 3483 [QMDR]
37673
37749
+
Arg
TCT
[ENA]
¡û
>W1911696441
QMDR01000063
Bacillota
Clostridium tetani 3483 [QMDR]
182
258
+
Arg
TCT
[ENA]
¡û
>W1911696446
QMDR01000065
Bacillota
Clostridium tetani 3483 [QMDR]
19
95
+
Arg
TCT
[ENA]
¡û
>C151100889
HG530135
Bacillota
Clostridium tetani 12124569 [HG530135]
2516107
2516031
-
Arg
TCT
[Ensembl]
¡û
>W1510647791
CVPI01000006
Bacillota
Clostridium niameyense mt5 [CVPI]
275855
275931
+
Arg
TCT
[ENA]
¡û
>W1511345176
JRGG01000003
Bacillota
Clostridium tetani C2 [JRGG]
249115
249039
-
Arg
TCT
[ENA]
¡û
>W1511345316
JRGI01000040
Bacillota
Clostridium tetani ATCC 453 [JRGI]
82
6
-
Arg
TCT
[ENA]
¡û
>W1511345363
JRGJ01000043
Bacillota
Clostridium tetani ATCC 19406 [JRGJ]
82
6
-
Arg
TCT
[ENA]
¡û
>W1511480237
JWIX01000027
Bacillota
Clostridium tetani A [JWIX]
163742
163666
-
Arg
TCT
[ENA]
¡û
>W1511565932
LAGG01000215
Bacillota
Clostridium sporogenes CDC24442 [LAGG]
76
1
-
Arg
TCT
[ENA]
¡û
>W1511565943
LAGG01000271
Bacillota
Clostridium sporogenes CDC24442 [LAGG]
131
55
-
Arg
TCT
[ENA]
¡û
>W1610925104
LTBA01000036
Bacillota
Clostridium tepidiprofundi DSM 19306 [LTBA]
4413
4489
+
Arg
TCT
[ENA]
¡û
>W1710521483
FNGL01000002
Bacillota
Clostridium cochlearium [FNGL]
144222
144298
+
Arg
TCT
[ENA]
¡û
>W1710521487
FNGL01000002
Bacillota
Clostridium cochlearium [FNGL]
144614
144690
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK