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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180908 (54 seq.)
>W1711048935
LRQD01000018
Bacillota
Lactobacillus gasseri [LRQD]
213
288
+
Pro
CGG
[ENA]
¡û
>W131194883
ASRG01000008
Bacillota
Lactobacillus paragasseri K7 [ASRG]
54398
54323
-
Pro
CGG
[ENA]
¡û
>W1711269318
LZDT01000056
Bacillota
Lactobacillus gasseri [LZDT]
32449
32524
+
Pro
CGG
[ENA]
¡û
>W1711744901
MUJA01000001
Bacillota
Lactobacillus gasseri [MUJA]
422139
422214
+
Pro
CGG
[ENA]
¡û
>W1711790954
MWIK01000006
Bacillota
Lactobacillus johnsonii [MWIK]
40665
40740
+
Pro
CGG
[ENA]
¡û
>W1712039801
NFJY01000005
Bacillota
Lactobacillus johnsonii [NFJY]
50623
50548
-
Pro
CGG
[ENA]
¡û
>C171048899
CP016400
Bacillota
Lactobacillus johnsonii BS15 [CP016400]
1648850
1648925
+
Pro
CGG
-
¡û
>C171118849
CP021427
Bacillota
Lactobacillus gasseri 4M13 [CP021427]
601618
601543
-
Pro
CGG
-
¡û
>C011597
CP000413
Bacillota
Lactobacillus gasseri ATCC 33323 = JCM 1131 [CP000413]
318595
318668
+
Pro
CGG
[Ensembl]
¡û
>WENV180231809
OBCO01000008
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
418851
418926
+
Pro
CGG
[ENA]
¢þ
>W141087795
AUUE01000002
Bacillota
Lactobacillus gasseri 2016 [AUUE]
108525
108600
+
Pro
CGG
[ENA]
¡û
>WENV181173591
OEJK01000033
[OEJK] human metagenome; G_DNA_Posterior fornix
64
139
+
Pro
CGG
[ENA]
¢þ
>WENV181281747
OFGP01000471
[OFGP] mouse gut metagenome; faeces
33310
33385
+
Pro
CGG
[ENA]
¢þ
>WENV181282996
OFGQ01000302
[OFGQ] mouse gut metagenome; faeces
33304
33379
+
Pro
CGG
[ENA]
¢þ
>W141228061
BALQ01000001
Bacillota
Lactobacillus gasseri JCM 1131 [BALQ]
418741
418816
+
Pro
CGG
[ENA]
¡û
>WENV182408763
OIFG01000002
[OIFG] human gut metagenome; stool
419702
419777
+
Pro
CGG
[ENA]
¢þ
>WENV182495240
OITA01002494
[OITA] human gut metagenome; human gut
1407
1482
+
Pro
CGG
[ENA]
¢þ
>WENV182943627
OKVI01000258
[OKVI] human gut metagenome; human gut
34935
34860
-
Pro
CGG
[ENA]
¢þ
>WENV183010849
OLDY01000005
[OLDY] human gut metagenome; human gut
139100
139025
-
Pro
CGG
[ENA]
¢þ
>WENV183217006
OLQI01000003
[OLQI] human gut metagenome; faeces
146810
146735
-
Pro
CGG
[ENA]
¢þ
>WENV183238642
OLQZ01003045
[OLQZ] human gut metagenome; faeces
591
516
-
Pro
CGG
[ENA]
¢þ
>WENV183307107
OLTD01000915
[OLTD] human gut metagenome; faeces
79
154
+
Pro
CGG
[ENA]
¢þ
>WENV183428322
OMBN01019306
[OMBN] human gut metagenome; feces
520
595
+
Pro
CGG
[ENA]
¢þ
>WENV183771654
PPYF01000010
[PPYF] human gut metagenome; stool from patient with Crohn's disease
95152
95077
-
Pro
CGG
[ENA]
¢þ
>WENV183772721
PPYF01019216
[PPYF] human gut metagenome; stool from patient with Crohn's disease
125
200
+
Pro
CGG
[ENA]
¢þ
>WENV183790307
PPYF01411199
[PPYF] human gut metagenome; stool from patient with Crohn's disease
62686
62611
-
Pro
CGG
[ENA]
¢þ
>C181181915
CP029614
Bacillota
Lactobacillus johnsonii Byun-jo-01 [CP029614]
980221
980146
-
Pro
CGG
-
¡û
>C191078751
CP031701
Bacillota
Lactobacillus johnsonii IDCC9203 [CP031701]
996232
996157
-
Pro
CGG
-
¡û
>C191093466
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
316364
316439
+
Pro
CGG
-
¡û
>W09123033
ACGR01000021
Bacillota
Lactobacillus johnsonii ATCC 33200 [ACGR]
98309
98234
-
Pro
CGG
[ENA]
¡û
>W1910901087
NGNV01000033
Bacillota
Lactobacillus taiwanensis 609u [NGNV]
65800
65725
-
Pro
CGG
[ENA]
¡û
>W1910901565
NGOE01000045
Bacillota
Lactobacillus johnsonii 117q [NGOE]
59324
59249
-
Pro
CGG
[ENA]
¡û
>W1910901621
NGOF01000044
Bacillota
Lactobacillus johnsonii 117k [NGOF]
59609
59534
-
Pro
CGG
[ENA]
¡û
>W1910901775
NGOI01000044
Bacillota
Lactobacillus johnsonii 117a [NGOI]
77282
77207
-
Pro
CGG
[ENA]
¡û
>W1910901976
NGOM01000032
Bacillota
Lactobacillus taiwanensis 111z [NGOM]
71962
71887
-
Pro
CGG
[ENA]
¡û
>W1910902228
NGOR01000011
Bacillota
Lactobacillus taiwanensis 111k [NGOR]
178919
178844
-
Pro
CGG
[ENA]
¡û
>W1910902298
NGOS01000098
Bacillota
Lactobacillus taiwanensis 107v [NGOS]
63394
63319
-
Pro
CGG
[ENA]
¡û
>W1910902554
NGOX01000041
Bacillota
Lactobacillus taiwanensis 103n [NGOX]
72082
72007
-
Pro
CGG
[ENA]
¡û
>W1910918441
NIBB01000030
Bacillota
Lactobacillus johnsonii UMNLJ54 [NIBB]
40650
40575
-
Pro
CGG
[ENA]
¡û
>W1911569265
PCYR01000003
Bacillota
Lactobacillus sp. UMNPBX19 [PCYR]
44209
44284
+
Pro
CGG
[ENA]
¡û
>W1810001305
BEXH01000002
Bacillota
Lactobacillus paragasseri JCM 5343 [BEXH]
294473
294548
+
Pro
CGG
[ENA]
¡û
>W1810001364
BEXI01000009
Bacillota
Lactobacillus paragasseri JCM 5344 [BEXI]
32332
32407
+
Pro
CGG
[ENA]
¡û
>W1810190659
PKKA01000005
Bacillota
Lactobacillus gasseri UMB0045 [PKKA]
99747
99672
-
Pro
CGG
[ENA]
¡û
>W1810267968
PQWW01000005
Bacillota
Lactobacillus gasseri JG141 [PQWW]
32285
32360
+
Pro
CGG
[ENA]
¡û
>W10112009
ADDY01000021
Bacillota
Lactobacillus gasseri SV-16A-US [ADDY]
387
312
-
Pro
CGG
[ENA]
¡û
>W10113248
ADFT01000034
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
325631
325706
+
Pro
CGG
[ENA]
¡û
>C11112924
CP002464
Bacillota
Lactobacillus johnsonii DPC 6026 [CP002464]
336221
336296
+
Pro
CGG
[Ensembl]
¡û
>W11114986
ADDY01000021
Bacillota
Lactobacillus gasseri SV-16A-US [ADDY]
387
312
-
Pro
CGG
[ENA]
¡û
>W11116475
ADFT01000034
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
325631
325706
+
Pro
CGG
[ENA]
¡û
>W1511437382
JUKW01000027
Bacillota
Lactobacillus gasseri 987_LJOH [JUKW]
93
168
+
Pro
CGG
[ENA]
¡û
>W1511453104
JVEV01000034
Bacillota
Lactobacillus gasseri 497_LGAS [JVEV]
46144
46219
+
Pro
CGG
[ENA]
¡û
>W1511454672
JVGG01000049
Bacillota
Lactobacillus gasseri 459_LHEL [JVGG]
41314
41239
-
Pro
CGG
[ENA]
¡û
>W1610890064
LRQD01000018
Bacillota
Lactobacillus gasseri [LRQD]
213
288
+
Pro
CGG
[ENA]
¡û
>W1611030130
LZDT01000056
Bacillota
Lactobacillus gasseri [LZDT]
32449
32524
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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