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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180916 (45 seq.)
>W1711174319
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59142
59226
+
Leu
TAG
[ENA]
¡û
>W1711621605
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
719155
719239
+
Leu
TAG
[ENA]
¡û
>C020671
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3818328
3818244
-
Leu
TAG
[Ensembl]
¡û
>C022920
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1229671
1229755
+
Leu
TAG
[Ensembl]
¡û
>w026313
ABAU01000061
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17287
17373
+
Leu
TAG
[ENA]
¡û
>w024923
AAZC01000072
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
400
486
+
Leu
TAG
[ENA]
¡û
>w018656
AATK01000076
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
13557
13471
-
Leu
TAG
[ENA]
¡û
>WENV180310697
OBJT01013246
[OBJT] soil metagenome; soil
1099
1183
+
Leu
TAG
[ENA]
¢þ
>C08008656
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3931100
3931019
-
Leu
TAG
[Ensembl]
¡û
>C08008760
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4054018
4053937
-
Leu
TAG
[Ensembl]
¡û
>W141277726
JAEU01000019
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
55770
55686
-
Leu
TAG
[ENA]
¡û
>WENV170022234
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2198
2282
+
Leu
TAG
[ENA]
¢þ
>WENV170022238
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2693
2777
+
Leu
TAG
[ENA]
¢þ
>C181016844
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4421277
4421193
-
Leu
TAG
-
¡û
>C181057581
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
2349441
2349357
-
Leu
TAG
-
¡û
>C181062990
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3590093
3590009
-
Leu
TAG
-
¡û
>C181075005
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3108840
3108924
+
Leu
TAG
-
¡û
>C181164490
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3033113
3033197
+
Leu
TAG
-
¡û
>C181167922
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3648816
3648732
-
Leu
TAG
-
¡û
>W141520035
JGVI01000030
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
52676
52760
+
Leu
TAG
[ENA]
¡û
>C191187082
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3465206
3465122
-
Leu
TAG
-
¡û
>C191206465
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3752694
3752610
-
Leu
TAG
-
¡û
>C09109142
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1306807
1306891
+
Leu
TAG
[Ensembl]
¡û
>W1810073430
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
260079
259995
-
Leu
TAG
[ENA]
¡û
>W1810423000
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
2465402
2465318
-
Leu
TAG
[ENA]
¡û
>W1810587768
QFLG01000049
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
4835
4751
-
Leu
TAG
[ENA]
¡û
>W1810721530
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
48476
48560
+
Leu
TAG
[ENA]
¡û
>W10119024
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303961
303877
-
Leu
TAG
[ENA]
¡û
>W10126049
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508563
508479
-
Leu
TAG
[ENA]
¡û
>W10126353
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303175
303259
+
Leu
TAG
[ENA]
¡û
>C11119375
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1319254
1319338
+
Leu
TAG
[Ensembl]
¡û
>C11119517
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3912760
3912676
-
Leu
TAG
[Ensembl]
¡û
>C11119615
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
4001982
4001898
-
Leu
TAG
[Ensembl]
¡û
>W11125196
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303961
303877
-
Leu
TAG
[ENA]
¡û
>W11133310
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508563
508479
-
Leu
TAG
[ENA]
¡û
>W11133614
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303175
303259
+
Leu
TAG
[ENA]
¡û
>W11169880
AFOZ01000014
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
378524
378608
+
Leu
TAG
[ENA]
¡û
>W11178469
AGEX01000010
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
164969
164885
-
Leu
TAG
[ENA]
¡û
>W121103353
AKZL01000154
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
4482
4398
-
Leu
TAG
[ENA]
¡û
>W1610617874
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
40854
40938
+
Leu
TAG
[ENA]
¡û
>W1610982632
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59142
59226
+
Leu
TAG
[ENA]
¡û
>W1710597903
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
148115
148199
+
Leu
TAG
[ENA]
¡û
>W1710692489
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
97593
97677
+
Leu
TAG
[ENA]
¡û
>W1710706692
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
384742
384658
-
Leu
TAG
[ENA]
¡û
>W1710744049
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
40854
40938
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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