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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180917 (68 seq.)
>W1711027062
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75799
75715
-
Leu
TAG
[ENA]
¡û
>W1711174322
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59542
59626
+
Leu
TAG
[ENA]
¡û
>W1711621609
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
719642
719726
+
Leu
TAG
[ENA]
¡û
>W1711934397
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
179317
179233
-
Leu
TAG
[ENA]
¡û
>W1712080447
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
62171
62087
-
Leu
TAG
[ENA]
¡û
>W1712080450
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
61830
61746
-
Leu
TAG
[ENA]
¡û
>WENV013075
AACY020358049
Marine microbial communities from Global Ocean Sampling (GOS)
98
184
+
Leu
TAG
[ENA]
>C020675
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3817855
3817771
-
Leu
TAG
[Ensembl]
¡û
>C020923
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
940259
940343
+
Leu
TAG
[Ensembl]
¡û
>C021950
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
843884
843968
+
Leu
TAG
[Ensembl]
¡û
>C022222
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1184772
1184856
+
Leu
TAG
[Ensembl]
¡û
>C022324
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1177194
1177278
+
Leu
TAG
[Ensembl]
¡û
>C022420
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1239541
1239625
+
Leu
TAG
[Ensembl]
¡û
>C022523
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
1197938
1198022
+
Leu
TAG
[Ensembl]
¡û
>C022924
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1230132
1230216
+
Leu
TAG
[Ensembl]
¡û
>C023287
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3312576
3312492
-
Leu
TAG
[Ensembl]
¡û
>w026317
ABAU01000061
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17760
17846
+
Leu
TAG
[ENA]
¡û
>w024927
AAZC01000072
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
887
973
+
Leu
TAG
[ENA]
¡û
>w022924
AAWY01000064
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
14176
14090
-
Leu
TAG
[ENA]
¡û
>w018660
AATK01000076
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
13084
12998
-
Leu
TAG
[ENA]
¡û
>w007657
AAIU01000006
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
35233
35147
-
Leu
TAG
[ENA]
¡û
>W141171254
AXZL01000076
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
27666
27582
-
Leu
TAG
[ENA]
¡û
>C08008660
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3930613
3930532
-
Leu
TAG
[Ensembl]
¡û
>W141227905
BALN01000017
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
62822
62906
+
Leu
TAG
[ENA]
¡û
>C08008764
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4053545
4053464
-
Leu
TAG
[Ensembl]
¡û
>W141277729
JAEU01000019
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
55396
55312
-
Leu
TAG
[ENA]
¡û
>WENV021004
AACY020561423
Marine microbial communities from Global Ocean Sampling (GOS)
266
352
+
Leu
TAG
[ENA]
>C181016848
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4420821
4420737
-
Leu
TAG
-
¡û
>C181057585
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
2348980
2348896
-
Leu
TAG
-
¡û
>C181075009
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3109312
3109396
+
Leu
TAG
-
¡û
>C181164494
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3033599
3033683
+
Leu
TAG
-
¡û
>C181165412
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
3744856
3744940
+
Leu
TAG
-
¡û
>C181167926
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3648359
3648275
-
Leu
TAG
-
¡û
>W141520039
JGVI01000030
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
53136
53220
+
Leu
TAG
[ENA]
¡û
>C191205222
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3242916
3243000
+
Leu
TAG
-
¡û
>C191206469
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3752221
3752137
-
Leu
TAG
-
¡û
>W09102913
AAIO01000137
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
330
414
+
Leu
TAG
[ENA]
¡û
>W09103096
AAIV01000005
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
209787
209703
-
Leu
TAG
[ENA]
¡û
>W09104087
AALH01000080
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
328
412
+
Leu
TAG
[ENA]
¡û
>W09104290
AALN01000013
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
4668
4752
+
Leu
TAG
[ENA]
¡û
>W09104640
AALX01000087
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
583
667
+
Leu
TAG
[ENA]
¡û
>C09109146
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1307280
1307364
+
Leu
TAG
[Ensembl]
¡û
>W1910913784
NHRI01000012
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
37699
37615
-
Leu
TAG
[ENA]
¡û
>W1810155313
PJAP01000734
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
127
43
-
Leu
TAG
[ENA]
¡û
>W1810423004
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
2464928
2464844
-
Leu
TAG
[ENA]
¡û
>W1810587772
QFLG01000049
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
4374
4290
-
Leu
TAG
[ENA]
¡û
>W1810721534
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
48948
49032
+
Leu
TAG
[ENA]
¡û
>W10119028
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303488
303404
-
Leu
TAG
[ENA]
¡û
>W10126053
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508077
507993
-
Leu
TAG
[ENA]
¡û
>W10126357
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303661
303745
+
Leu
TAG
[ENA]
¡û
>C11119379
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1319740
1319824
+
Leu
TAG
[Ensembl]
¡û
>C11119521
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3912287
3912203
-
Leu
TAG
[Ensembl]
¡û
>C11119619
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
4001509
4001425
-
Leu
TAG
[Ensembl]
¡û
>W1511403529
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
1090803
1090887
+
Leu
TAG
[ENA]
¡û
>C11121556
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3391554
3391470
-
Leu
TAG
[Ensembl]
¡û
>W11125200
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303488
303404
-
Leu
TAG
[ENA]
¡û
>W11133314
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508077
507993
-
Leu
TAG
[ENA]
¡û
>W11133618
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303661
303745
+
Leu
TAG
[ENA]
¡û
>W11178473
AGEX01000010
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
164496
164412
-
Leu
TAG
[ENA]
¡û
>W1610072060
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
24208
24292
+
Leu
TAG
[ENA]
¡û
>W1610617878
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
41315
41399
+
Leu
TAG
[ENA]
¡û
>W1610875174
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75799
75715
-
Leu
TAG
[ENA]
¡û
>W1610982635
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59542
59626
+
Leu
TAG
[ENA]
¡û
>W1710069262
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
24208
24292
+
Leu
TAG
[ENA]
¡û
>W1710597907
FTNN01000001
Gammaproteobacteria
Shewanella morhuae [FTNN]
148577
148661
+
Leu
TAG
[ENA]
¡û
>W1710692493
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
98054
98138
+
Leu
TAG
[ENA]
¡û
>W1710706696
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
384281
384197
-
Leu
TAG
[ENA]
¡û
>W1710744053
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
41315
41399
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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