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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180944 (31 seq.)
>W1710934483
LOJI01000040
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
43302
43218
-
Leu
CAA
[ENA]
¡û
>W1710934513
LOJJ01000005
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
42318
42402
+
Leu
CAA
[ENA]
¡û
>W1711147342
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
607870
607954
+
Leu
CAA
[ENA]
¡û
>W1711149051
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
265535
265619
+
Leu
CAA
[ENA]
¡û
>W1711149088
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
281290
281374
+
Leu
CAA
[ENA]
¡û
>W1711149124
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
42422
42506
+
Leu
CAA
[ENA]
¡û
>W1711149161
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
712651
712735
+
Leu
CAA
[ENA]
¡û
>W1711272442
LZFI01000008
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
65134
65050
-
Leu
CAA
[ENA]
¡û
>W1711281989
LZMQ01000003
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
1085588
1085672
+
Leu
CAA
[ENA]
¡û
>W1711282022
LZMR01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
553839
553923
+
Leu
CAA
[ENA]
¡û
>W1711932785
NAIA01000001
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
112778
112862
+
Leu
CAA
[ENA]
¡û
>W1712077048
NGUP01000001
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
458630
458546
-
Leu
CAA
[ENA]
¡û
>C171035107
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
750420
750504
+
Leu
CAA
-
¡û
>C171035146
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
749949
750033
+
Leu
CAA
-
¡û
>C171035183
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
697001
697085
+
Leu
CAA
-
¡û
>W131220815
ATZV01000058
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
15687
15603
-
Leu
CAA
[ENA]
¡û
>C017375
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
607870
607954
+
Leu
CAA
[Ensembl]
¡û
>WENV170606213
FUWD010632494
[FUWD] metagenome; unknown
99
183
+
Leu
CAA
[ENA]
¢þ
>C181187675
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
426072
426156
+
Leu
CAA
-
¡û
>C181218956
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
1133731
1133647
-
Leu
CAA
-
¡û
>C181218972
LT606950
Betaproteobacteria
Polynucleobacter necessarius [LT606950]
411223
411307
+
Leu
CAA
-
¡û
>C181219010
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
616890
616974
+
Leu
CAA
-
¡û
>C181219077
LT615227
Betaproteobacteria
Polynucleobacter necessarius [LT615227]
118078
117994
-
Leu
CAA
-
¡û
>C181219101
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
961829
961745
-
Leu
CAA
-
¡û
>W09106271
AAUC01000002
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
195144
195228
+
Leu
CAA
[ENA]
¡û
>W1810699141
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
783448
783532
+
Leu
CAA
[ENA]
¡û
>W1810699188
QMCH01000003
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
63244
63328
+
Leu
CAA
[ENA]
¡û
>C161092386
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
1426941
1426857
-
Leu
CAA
[Ensembl]
¡û
>WENV058417
AACY023328575
Marine microbial communities from Global Ocean Sampling (GOS)
364
278
-
Leu
CAA
[ENA]
>W1610792014
LOJI01000040
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
43302
43218
-
Leu
CAA
[ENA]
¡û
>W1610792044
LOJJ01000005
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
42318
42402
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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