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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180945 (66 seq.)
>W1710934476
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
190088
190004
-
Leu
GAG
[ENA]
¡û
>W1710934498
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
98257
98341
+
Leu
GAG
[ENA]
¡û
>W1711147355
LVJO01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVJO]
1055925
1055841
-
Leu
GAG
[ENA]
¡û
>W1711149064
LVLD01000007
Betaproteobacteria
Polynucleobacter asymbioticus P1-KOL8 [LVLD]
702962
702878
-
Leu
GAG
[ENA]
¡û
>W1711149100
LVLE01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
737183
737099
-
Leu
GAG
[ENA]
¡û
>W1711149137
LVLF01000005
Betaproteobacteria
Polynucleobacter asymbioticus [LVLF]
491577
491493
-
Leu
GAG
[ENA]
¡û
>W1711149174
LVLG01000001
Betaproteobacteria
Polynucleobacter asymbioticus [LVLG]
1186820
1186736
-
Leu
GAG
[ENA]
¡û
>W1711272428
LZFI01000002
Betaproteobacteria
Polynucleobacter sp. MWH-Adler-W8 [LZFI]
452489
452405
-
Leu
GAG
[ENA]
¡û
>W1711282009
LZMQ01000007
Betaproteobacteria
Polynucleobacter sp. QLW-P1DATA-2 [LZMQ]
11924
12008
+
Leu
GAG
[ENA]
¡û
>W1711282041
LZMR01000004
Betaproteobacteria
Polynucleobacter sp. MWH-Tro8-2-5-gr [LZMR]
617062
616978
-
Leu
GAG
[ENA]
¡û
>W1711301911
MAIK01000350
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
958
874
-
Leu
GAG
[ENA]
¡û
>W1711421593
MHZG01000002
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
237560
237644
+
Leu
GAG
[ENA]
¡û
>W1711625788
MPIY01000007
Betaproteobacteria
Polynucleobacter sphagniphilus MWH-Weng1-1 [MPIY]
48322
48238
-
Leu
GAG
[ENA]
¡û
>W1711932814
NAIA01000003
Betaproteobacteria
Polynucleobacter hirudinilacicola MWH-EgelM1-30-B4 [NAIA]
920382
920298
-
Leu
GAG
[ENA]
¡û
>W1712077066
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
74931
74847
-
Leu
GAG
[ENA]
¡û
>C171035129
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
1211700
1211616
-
Leu
GAG
-
¡û
>C171035167
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
1230533
1230449
-
Leu
GAG
-
¡û
>C171035205
CP015018
Betaproteobacteria
Polynucleobacter asymbioticus Tro8F10W22 [CP015018]
1146531
1146447
-
Leu
GAG
-
¡û
>C017396
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1055925
1055841
-
Leu
GAG
[Ensembl]
¡û
>WENV180391139
OBPM01017834
[OBPM] marine metagenome; ENVO:00002010
559
475
-
Leu
GAG
[ENA]
¢þ
>WENV181367569
OFQB01014020
[OFQB] freshwater metagenome; Freshwater Lake
181
265
+
Leu
GAG
[ENA]
¢þ
>WENV181368170
OFQK01000827
[OFQK] freshwater metagenome; Freshwater Lake
494
410
-
Leu
GAG
[ENA]
¢þ
>WENV181368680
OFQN01000024
[OFQN] freshwater metagenome; Freshwater Lake
1837
1753
-
Leu
GAG
[ENA]
¢þ
>WENV181369305
OFQP01000182
[OFQP] freshwater metagenome; Freshwater Lake
4594
4678
+
Leu
GAG
[ENA]
¢þ
>WENV181369957
OFQR01003330
[OFQR] freshwater metagenome; Freshwater Lake
549
465
-
Leu
GAG
[ENA]
¢þ
>WENV181370153
OFQS01000154
[OFQS] freshwater metagenome; Freshwater Lake
777
861
+
Leu
GAG
[ENA]
¢þ
>WENV181370539
OFQT01000121
[OFQT] freshwater metagenome; Freshwater Lake
8019
7935
-
Leu
GAG
[ENA]
¢þ
>WENV181384917
OFRI01020129
[OFRI] wastewater metagenome; Exp Tend VB 90WW
147
231
+
Leu
GAG
[ENA]
¢þ
>WENV181395728
OFSB01001048
[OFSB] freshwater metagenome; Freshwater Lake
2098
2182
+
Leu
GAG
[ENA]
¢þ
>WENV181401240
OFSF01089503
[OFSF] wastewater metagenome; Exp Tend VB 100WW
84
168
+
Leu
GAG
[ENA]
¢þ
>WENV181838601
OGVN01005312
[OGVN] freshwater metagenome; freshwater
655
739
+
Leu
GAG
[ENA]
¢þ
>WENV181839249
OGVO01000380
[OGVO] freshwater metagenome; freshwater
5306
5390
+
Leu
GAG
[ENA]
¢þ
>WENV181839781
OGVO01012379
[OGVO] freshwater metagenome; freshwater
679
595
-
Leu
GAG
[ENA]
¢þ
>WENV181841529
OGVS01000544
[OGVS] freshwater metagenome; freshwater
3105
3021
-
Leu
GAG
[ENA]
¢þ
>WENV181843193
OGVU01002745
[OGVU] freshwater metagenome; freshwater
1628
1712
+
Leu
GAG
[ENA]
¢þ
>WENV181843612
OGVU01034479
[OGVU] freshwater metagenome; freshwater
139
223
+
Leu
GAG
[ENA]
¢þ
>WENV181843862
OGVV01000273
[OGVV] freshwater metagenome; freshwater
1888
1972
+
Leu
GAG
[ENA]
¢þ
>WENV181844220
OGVV01022842
[OGVV] freshwater metagenome; freshwater
80
164
+
Leu
GAG
[ENA]
¢þ
>WENV181848594
OGVZ01013505
[OGVZ] freshwater metagenome; freshwater
536
452
-
Leu
GAG
[ENA]
¢þ
>WENV181851026
OGWE01005989
[OGWE] freshwater metagenome; freshwater
534
450
-
Leu
GAG
[ENA]
¢þ
>WENV181853487
OGWI01008270
[OGWI] freshwater metagenome; freshwater
190
274
+
Leu
GAG
[ENA]
¢þ
>WENV181853851
OGWJ01001001
[OGWJ] freshwater metagenome; freshwater
2178
2262
+
Leu
GAG
[ENA]
¢þ
>WENV181855865
OGWM01003920
[OGWM] freshwater metagenome; freshwater
949
1033
+
Leu
GAG
[ENA]
¢þ
>WENV182865877
OKRQ01005349
[OKRQ] freshwater metagenome; freshwater
891
975
+
Leu
GAG
[ENA]
¢þ
>C08007618
CP001010
Betaproteobacteria
Polynucleobacter necessarius [CP001010]
706401
706485
+
Leu
GAG
[Ensembl]
¡û
>WENV170616228
FUWD012881940
[FUWD] metagenome; unknown
485
569
+
Leu
GAG
[ENA]
¢þ
>WENV170616229
FUWD012881941
[FUWD] metagenome; unknown
224
308
+
Leu
GAG
[ENA]
¢þ
>C181078378
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
725550
725634
+
Leu
GAG
-
¡û
>C181187691
CP030086
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-Creno-4B4 [CP030086]
992206
992122
-
Leu
GAG
-
¡û
>C181218869
LT606946
Betaproteobacteria
Polynucleobacter necessarius [LT606946]
673792
673876
+
Leu
GAG
-
¡û
>C181218904
LT606947
Betaproteobacteria
Polynucleobacter necessarius [LT606947]
392361
392445
+
Leu
GAG
-
¡û
>C181218963
LT606949
Betaproteobacteria
Polynucleobacter necessarius [LT606949]
901852
901768
-
Leu
GAG
-
¡û
>C181219018
LT606951
Betaproteobacteria
Polynucleobacter necessarius [LT606951]
916228
916312
+
Leu
GAG
-
¡û
>C181219109
LT615228
Betaproteobacteria
Polynucleobacter necessarius [LT615228]
708769
708685
-
Leu
GAG
-
¡û
>W09106283
AAUC01000004
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
184933
184849
-
Leu
GAG
[ENA]
¡û
>W09107513
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
887147
887063
-
Leu
GAG
[ENA]
¡û
>C141003792
CP004348
Betaproteobacteria
beta proteobacterium CB [CP004348]
733192
733276
+
Leu
GAG
[Ensembl]
¡û
>W1810699148
QMCG01000001
Betaproteobacteria
Polynucleobacter paneuropaeus MWH-UK1W16 [QMCG]
1435785
1435701
-
Leu
GAG
[ENA]
¡û
>W1810699195
QMCH01000003
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
699137
699053
-
Leu
GAG
[ENA]
¡û
>C151025646
CP007501
Betaproteobacteria
Polynucleobacter duraquae MWH-MoK4 [CP007501]
739372
739456
+
Leu
GAG
[Ensembl]
¡û
>C161092375
CP015922
Betaproteobacteria
Polynucleobacter wuianus QLW-P1FAT50C-4 [CP015922]
896429
896513
+
Leu
GAG
[Ensembl]
¡û
>WENV057251
AACY023289380
Marine microbial communities from Global Ocean Sampling (GOS)
410
496
+
Leu
GAG
[ENA]
>WENV058207
AACY023321115
Marine microbial communities from Global Ocean Sampling (GOS)
549
635
+
Leu
GAG
[ENA]
>W1610792007
LOJI01000035
Betaproteobacteria
Polynucleobacter yangtzensis [LOJI]
190088
190004
-
Leu
GAG
[ENA]
¡û
>W1610792029
LOJJ01000003
Betaproteobacteria
Polynucleobacter sinensis [LOJJ]
98257
98341
+
Leu
GAG
[ENA]
¡û
>W1611052751
MAIK01000350
Betaproteobacteria
Polynucleobacter necessarius [MAIK]
958
874
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK