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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180975 (68 seq.)
>W1710785198
LJHQ01000065
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
31722
31806
+
Leu
GAG
[ENA]
¡û
>W1710869470
LMJT01000006
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
39336
39252
-
Leu
GAG
[ENA]
¡û
>W1710869654
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
1268546
1268630
+
Leu
GAG
[ENA]
¡û
>W1710879528
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
1053128
1053212
+
Leu
GAG
[ENA]
¡û
>W1710893353
LNER01000175
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
6132
6048
-
Leu
GAG
[ENA]
¡û
>W1711072958
LSIB01000144
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
145076
144992
-
Leu
GAG
[ENA]
¡û
>W1711073112
LSIG01000004
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
87471
87387
-
Leu
GAG
[ENA]
¡û
>W1711073310
LSIK01000285
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
50255
50339
+
Leu
GAG
[ENA]
¡û
>W1711073810
LSIY01000082
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
13721
13637
-
Leu
GAG
[ENA]
¡û
>W1711074362
LSJL01000162
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
13719
13635
-
Leu
GAG
[ENA]
¡û
>W1711074511
LSJP01000241
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
44393
44477
+
Leu
GAG
[ENA]
¡û
>W1711074620
LSJR01000455
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
3649
3565
-
Leu
GAG
[ENA]
¡û
>W1711074734
LSJU01000924
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
2048
1964
-
Leu
GAG
[ENA]
¡û
>W1711074767
LSJV01000100
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
52689
52773
+
Leu
GAG
[ENA]
¡û
>W1711074871
LSJX01000290
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
52689
52773
+
Leu
GAG
[ENA]
¡û
>W1711075560
LSKN01000085
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
52689
52773
+
Leu
GAG
[ENA]
¡û
>W1711385478
MEEG01000127
Alphaproteobacteria
Methylobacterium sp. SCN 67-24 [MEEG]
9165
9249
+
Leu
GAG
[ENA]
¡û
>C171049968
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
3277992
3278076
+
Leu
GAG
-
¡û
>C171057744
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
4986677
4986761
+
Leu
GAG
-
¡û
>WENV180690721
OCZS010019940
[OCZS] soil metagenome; soil
100
16
-
Leu
GAG
[ENA]
¢þ
>WENV181223540
OFDC01029480
[OFDC] hot springs metagenome; Water
665
749
+
Leu
GAG
[ENA]
¢þ
>WENV181228006
OFDN01104335
[OFDN] hot springs metagenome; Water
16
100
+
Leu
GAG
[ENA]
¢þ
>WENV181415209
OGCL01006004
[OGCL] hot springs metagenome; Hot spring water
4295
4379
+
Leu
GAG
[ENA]
¢þ
>W141220776
AZYE01001673
Alphaproteobacteria
Microvirga lupini [AZYE]
14556
14472
-
Leu
GAG
[ENA]
¡û
>WENV170680911
LFEF01033682
[LFEF] freshwater metagenome; waterbloom
657
741
+
Leu
GAG
[ENA]
¢þ
>WENV170712405
LNFM01013027
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
38649
38565
-
Leu
GAG
[ENA]
¢þ
>WENV171003163
NNBT01002038
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
22249
22333
+
Leu
GAG
[ENA]
¢þ
>C181020308
CP016616
Alphaproteobacteria
Microvirga ossetica V5/3M [CP016616]
4482019
4481935
-
Leu
GAG
-
¡û
>C191014045
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
816007
815923
-
Leu
GAG
-
¡û
>W141805306
JPKG01000040
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
16677
16761
+
Leu
GAG
[ENA]
¡û
>W141810200
JPUG01000065
Alphaproteobacteria
Microvirga sp. BSC39 aerilata [JPUG]
15100
15184
+
Leu
GAG
[ENA]
¡û
>W1910501705
FYAS01000002
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
256189
256105
-
Leu
GAG
[ENA]
¡û
>W1910635412
LNCQ01000029
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
270187
270271
+
Leu
GAG
[ENA]
¡û
>W1910840133
MZXT01000010
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
398008
397924
-
Leu
GAG
[ENA]
¡û
>W1910840192
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
1394709
1394625
-
Leu
GAG
[ENA]
¡û
>W1910847633
NBDP01000003
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
462167
462083
-
Leu
GAG
[ENA]
¡û
>W1911653564
QDGA01000011
Alphaproteobacteria
Microvirga calopogonii CCBAU 65841 [QDGA]
115000
114916
-
Leu
GAG
[ENA]
¡û
>W1810252003
PQFZ01000003
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
331406
331322
-
Leu
GAG
[ENA]
¡û
>W1810463375
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
4372061
4371977
-
Leu
GAG
[ENA]
¡û
>W1810676890
QKMI01000003
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
203023
202939
-
Leu
GAG
[ENA]
¡û
>C161070675
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
1793483
1793567
+
Leu
GAG
[Ensembl]
¡û
>W121068046
AJUA01000078
Alphaproteobacteria
Microvirga lotononidis WSM3557 [AJUA]
83479
83395
-
Leu
GAG
[ENA]
¡û
>W1610550613
JXTJ01000004
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
746362
746446
+
Leu
GAG
[ENA]
¡û
>W1610617165
LGSZ01000031
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
187447
187531
+
Leu
GAG
[ENA]
¡û
>W1610649004
LJHQ01000065
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
31722
31806
+
Leu
GAG
[ENA]
¡û
>W1610731816
LMJT01000006
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
39336
39252
-
Leu
GAG
[ENA]
¡û
>W1610732000
LMJW01000022
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
1268546
1268630
+
Leu
GAG
[ENA]
¡û
>W1610741874
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
1053128
1053212
+
Leu
GAG
[ENA]
¡û
>W1610753619
LNER01000175
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
6132
6048
-
Leu
GAG
[ENA]
¡û
>W1610912218
LSIB01000144
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
145076
144992
-
Leu
GAG
[ENA]
¡û
>W1610912417
LSIG01000004
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
87471
87387
-
Leu
GAG
[ENA]
¡û
>W1610912615
LSIK01000285
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
50255
50339
+
Leu
GAG
[ENA]
¡û
>W1610913115
LSIY01000082
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
13721
13637
-
Leu
GAG
[ENA]
¡û
>W1610913667
LSJL01000162
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
13719
13635
-
Leu
GAG
[ENA]
¡û
>W1610913816
LSJP01000241
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
44393
44477
+
Leu
GAG
[ENA]
¡û
>W1610913925
LSJR01000455
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
3649
3565
-
Leu
GAG
[ENA]
¡û
>W1610914039
LSJU01000924
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
2048
1964
-
Leu
GAG
[ENA]
¡û
>W1610914072
LSJV01000100
Alphaproteobacteria
Rhizobiales bacterium CCH11-D2 [LSJV]
52689
52773
+
Leu
GAG
[ENA]
¡û
>W1610914176
LSJX01000290
Alphaproteobacteria
Rhizobiales bacterium CCH2-A4 [LSJX]
52689
52773
+
Leu
GAG
[ENA]
¡û
>W1610914865
LSKN01000085
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
52689
52773
+
Leu
GAG
[ENA]
¡û
>W1710064202
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
4358655
4358571
-
Leu
GAG
[ENA]
¡û
>W1710507580
FMVJ01000008
Alphaproteobacteria
Microvirga guangxiensis [FMVJ]
211841
211925
+
Leu
GAG
[ENA]
¡û
>W1710538945
FNUY01000003
Alphaproteobacteria
Bosea lathyri [FNUY]
597525
597441
-
Leu
GAG
[ENA]
¡û
>W1710544042
FOAN01000013
Alphaproteobacteria
Bosea lupini [FOAN]
55636
55720
+
Leu
GAG
[ENA]
¡û
>W1710556998
FOKP01000016
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
17504
17588
+
Leu
GAG
[ENA]
¡û
>W1710564938
FOQV01000015
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
59056
59140
+
Leu
GAG
[ENA]
¡û
>W1710660448
JXTJ01000004
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
746362
746446
+
Leu
GAG
[ENA]
¡û
>W1710742779
LGSZ01000031
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
187447
187531
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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