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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.180990 (144 seq.)
>W1711687562
MSCR01000009
Bacillota
Ligilactobacillus salivarius [MSCR]
7982
8057
+
Pro
CGG
[ENA]
¡û
>W1711943447
NBDX01000004
Bacillota
Ligilactobacillus salivarius [NBDX]
8964
9039
+
Pro
CGG
[ENA]
¡û
>W1711943488
NBDY01000005
Bacillota
Ligilactobacillus salivarius [NBDY]
8891
8966
+
Pro
CGG
[ENA]
¡û
>W1711943536
NBDZ01000005
Bacillota
Ligilactobacillus salivarius [NBDZ]
9400
9475
+
Pro
CGG
[ENA]
¡û
>W1711943579
NBEA01000005
Bacillota
Ligilactobacillus salivarius [NBEA]
8789
8864
+
Pro
CGG
[ENA]
¡û
>W1711943617
NBEB01000014
Bacillota
Ligilactobacillus salivarius [NBEB]
8094
8169
+
Pro
CGG
[ENA]
¡û
>W1711943667
NBEC01000016
Bacillota
Ligilactobacillus salivarius [NBEC]
8599
8674
+
Pro
CGG
[ENA]
¡û
>W1711943706
NBED01000006
Bacillota
Ligilactobacillus salivarius [NBED]
8178
8253
+
Pro
CGG
[ENA]
¡û
>W1711943755
NBEE01000007
Bacillota
Ligilactobacillus salivarius [NBEE]
8724
8799
+
Pro
CGG
[ENA]
¡û
>W1711943789
NBEF01000008
Bacillota
Ligilactobacillus salivarius [NBEF]
8654
8729
+
Pro
CGG
[ENA]
¡û
>W1711943836
NBEG01000006
Bacillota
Ligilactobacillus salivarius [NBEG]
8594
8669
+
Pro
CGG
[ENA]
¡û
>W1711943887
NBEH01000006
Bacillota
Ligilactobacillus salivarius [NBEH]
8956
9031
+
Pro
CGG
[ENA]
¡û
>W1711943929
NBEI01000005
Bacillota
Ligilactobacillus salivarius [NBEI]
8635
8710
+
Pro
CGG
[ENA]
¡û
>W1711943979
NBEJ01000004
Bacillota
Ligilactobacillus salivarius [NBEJ]
8698
8773
+
Pro
CGG
[ENA]
¡û
>W1711944021
NBEK01000005
Bacillota
Ligilactobacillus salivarius [NBEK]
8972
9047
+
Pro
CGG
[ENA]
¡û
>W1711944070
NBEL01000004
Bacillota
Ligilactobacillus salivarius [NBEL]
8969
9044
+
Pro
CGG
[ENA]
¡û
>W1711944120
NBEM01000003
Bacillota
Ligilactobacillus salivarius [NBEM]
8887
8962
+
Pro
CGG
[ENA]
¡û
>W1711944166
NBEN01000003
Bacillota
Ligilactobacillus salivarius [NBEN]
8888
8963
+
Pro
CGG
[ENA]
¡û
>W1711944224
NBEO01000005
Bacillota
Ligilactobacillus salivarius [NBEO]
26005
26080
+
Pro
CGG
[ENA]
¡û
>W1711944296
NBEP01000084
Bacillota
Ligilactobacillus salivarius [NBEP]
10810
10735
-
Pro
CGG
[ENA]
¡û
>W1711944315
NBEQ01000006
Bacillota
Ligilactobacillus salivarius [NBEQ]
8195
8270
+
Pro
CGG
[ENA]
¡û
>W1711944357
NBER01000010
Bacillota
Ligilactobacillus salivarius [NBER]
8172
8247
+
Pro
CGG
[ENA]
¡û
>W1711944408
NBES01000008
Bacillota
Ligilactobacillus salivarius [NBES]
8703
8778
+
Pro
CGG
[ENA]
¡û
>W1711944442
NBET01000010
Bacillota
Ligilactobacillus salivarius [NBET]
8352
8427
+
Pro
CGG
[ENA]
¡û
>W1711944502
NBEU01000007
Bacillota
Ligilactobacillus salivarius [NBEU]
9001
9076
+
Pro
CGG
[ENA]
¡û
>W1711944541
NBEV01000004
Bacillota
Ligilactobacillus salivarius [NBEV]
8144
8219
+
Pro
CGG
[ENA]
¡û
>W1711944594
NBEW01000012
Bacillota
Ligilactobacillus salivarius [NBEW]
8807
8882
+
Pro
CGG
[ENA]
¡û
>W1711944628
NBEX01000015
Bacillota
Ligilactobacillus salivarius [NBEX]
8700
8775
+
Pro
CGG
[ENA]
¡û
>W1711944670
NBEY01000013
Bacillota
Ligilactobacillus salivarius [NBEY]
9240
9315
+
Pro
CGG
[ENA]
¡û
>W1712035985
NFHF01000010
Bacillota
Ligilactobacillus salivarius [NFHF]
8658
8733
+
Pro
CGG
[ENA]
¡û
>W1712036929
NFHV01000023
Bacillota
Ligilactobacillus salivarius [NFHV]
8659
8734
+
Pro
CGG
[ENA]
¡û
>W1712041950
NFLK01000008
Bacillota
Ligilactobacillus salivarius [NFLK]
11940
12015
+
Pro
CGG
[ENA]
¡û
>C171057157
CP017107
Bacillota
Ligilactobacillus salivarius CICC 23174 [CP017107]
270720
270645
-
Pro
CGG
-
¡û
>C171128983
LT604074
Bacillota
Ligilactobacillus salivarius [LT604074]
1109938
1110013
+
Pro
CGG
-
¡û
>C173001722
CP020858
Bacillota
Ligilactobacillus salivarius ZLS006 [CP020858]
1600507
1600432
-
Pro
CGG
-
¡û
>C012673
CP000233
Bacillota
Ligilactobacillus salivarius UCC118 [CP000233]
231540
231613
+
Pro
CGG
[Ensembl]
¡û
>WENV181198217
OERD01000827
[OERD] metagenome; water of meat washing
1230
1155
-
Pro
CGG
[ENA]
¢þ
>WENV181347535
OFMM01008572
[OFMM] human gut metagenome; human gut
2039
2114
+
Pro
CGG
[ENA]
¢þ
>WENV181428088
OGCU01001731
[OGCU] metagenome; Human gut stool
2339
2264
-
Pro
CGG
[ENA]
¢þ
>WENV181428802
OGCW01000518
[OGCW] metagenome; Human gut stool
8506
8581
+
Pro
CGG
[ENA]
¢þ
>WENV181429156
OGCX01000063
[OGCX] metagenome; Human gut stool
63586
63511
-
Pro
CGG
[ENA]
¢þ
>WENV181454119
OGEC01013364
[OGEC] metagenome; Human gut stool
4
79
+
Pro
CGG
[ENA]
¢þ
>WENV181454362
OGED01000851
[OGED] metagenome; Human gut stool
7962
8037
+
Pro
CGG
[ENA]
¢þ
>WENV181455449
OGEE01034434
[OGEE] metagenome; Human gut stool
227
152
-
Pro
CGG
[ENA]
¢þ
>WENV181458007
OGEJ01000161
[OGEJ] metagenome; Human gut stool
33484
33409
-
Pro
CGG
[ENA]
¢þ
>WENV181468549
OGES01003692
[OGES] metagenome; Human gut stool
8163
8238
+
Pro
CGG
[ENA]
¢þ
>WENV181483098
OGFK01000593
[OGFK] metagenome; Human gut stool
20527
20452
-
Pro
CGG
[ENA]
¢þ
>WENV181484351
OGFL01001829
[OGFL] metagenome; Human gut stool
2842
2917
+
Pro
CGG
[ENA]
¢þ
>WENV181493185
OGFZ01013715
[OGFZ] metagenome; Human gut stool
289
364
+
Pro
CGG
[ENA]
¢þ
>WENV181494297
OGGB01000781
[OGGB] metagenome; Human gut stool
8161
8236
+
Pro
CGG
[ENA]
¢þ
>WENV181501533
OGGI01000447
[OGGI] metagenome; Human gut stool
33484
33409
-
Pro
CGG
[ENA]
¢þ
>WENV181506206
OGGM01000302
[OGGM] metagenome; Human gut stool
33484
33409
-
Pro
CGG
[ENA]
¢þ
>WENV181506657
OGGN01000655
[OGGN] metagenome; Human gut stool
89
14
-
Pro
CGG
[ENA]
¢þ
>WENV181517322
OGGZ01004633
[OGGZ] metagenome; Human gut stool
4311
4386
+
Pro
CGG
[ENA]
¢þ
>WENV181518728
OGHB01000121
[OGHB] metagenome; Human gut stool
5971
6046
+
Pro
CGG
[ENA]
¢þ
>WENV181525580
OGHJ01000442
[OGHJ] metagenome; Human gut stool
55249
55174
-
Pro
CGG
[ENA]
¢þ
>WENV181532499
OGHP01001192
[OGHP] metagenome; Human gut stool
2356
2431
+
Pro
CGG
[ENA]
¢þ
>WENV181537343
OGHW01006670
[OGHW] metagenome; Human gut stool
2088
2013
-
Pro
CGG
[ENA]
¢þ
>WENV181538183
OGHY01002221
[OGHY] metagenome; Human gut stool
8042
8117
+
Pro
CGG
[ENA]
¢þ
>WENV181541071
OGIC01001164
[OGIC] metagenome; Human gut stool
7949
8024
+
Pro
CGG
[ENA]
¢þ
>WENV181550308
OGIM01000748
[OGIM] metagenome; Human gut stool
1740
1665
-
Pro
CGG
[ENA]
¢þ
>WENV181551072
OGIN01000595
[OGIN] metagenome; Human gut stool
7962
8037
+
Pro
CGG
[ENA]
¢þ
>WENV181556610
OGIV01000041
[OGIV] metagenome; Human gut stool
8284
8359
+
Pro
CGG
[ENA]
¢þ
>WENV181558257
OGIX01000102
[OGIX] metagenome; Human gut stool
8024
8099
+
Pro
CGG
[ENA]
¢þ
>WENV181560111
OGJB01003234
[OGJB] metagenome; Human gut stool
1664
1589
-
Pro
CGG
[ENA]
¢þ
>WENV181563083
OGJG01001948
[OGJG] metagenome; Human gut stool
1237
1162
-
Pro
CGG
[ENA]
¢þ
>WENV181570959
OGJO01000350
[OGJO] metagenome; Human gut stool
10253
10328
+
Pro
CGG
[ENA]
¢þ
>WENV181573511
OGJR01013205
[OGJR] metagenome; Human gut stool
1137
1212
+
Pro
CGG
[ENA]
¢þ
>WENV181576074
OGJV01000360
[OGJV] metagenome; Human gut stool
19022
18947
-
Pro
CGG
[ENA]
¢þ
>WENV181581422
OGKA01008204
[OGKA] metagenome; Human gut stool
1134
1209
+
Pro
CGG
[ENA]
¢þ
>WENV181582144
OGKB01000598
[OGKB] metagenome; Human gut stool
8626
8701
+
Pro
CGG
[ENA]
¢þ
>WENV181587917
OGKH01000107
[OGKH] metagenome; Human gut stool
70363
70288
-
Pro
CGG
[ENA]
¢þ
>WENV181588654
OGKJ01000370
[OGKJ] metagenome; Human gut stool
9222
9297
+
Pro
CGG
[ENA]
¢þ
>WENV181589805
OGKM01000196
[OGKM] metagenome; Human gut stool
7962
8037
+
Pro
CGG
[ENA]
¢þ
>WENV181891666
OGXO01060229
[OGXO] human gut metagenome; faeces
46
121
+
Pro
CGG
[ENA]
¢þ
>WENV181933637
OGYS01015775
[OGYS] human gut metagenome; faeces
127
52
-
Pro
CGG
[ENA]
¢þ
>WENV181993242
OHAS01000250
[OHAS] human gut metagenome; faeces
33481
33406
-
Pro
CGG
[ENA]
¢þ
>WENV182008793
OHBJ01003615
[OHBJ] human gut metagenome; faeces
3140
3065
-
Pro
CGG
[ENA]
¢þ
>WENV182402162
OIES01001240
[OIES] human gut metagenome; human gut
7256
7331
+
Pro
CGG
[ENA]
¢þ
>WENV182431175
OIIG01035405
[OIIG] human gut metagenome; human gut
65
140
+
Pro
CGG
[ENA]
¢þ
>W141256172
CBVR010000038
Bacillota
Ligilactobacillus salivarius cp400 [CBVR]
11375
11300
-
Pro
CGG
[ENA]
¡û
>WENV182952411
OKVW01000571
[OKVW] human gut metagenome; human gut
9389
9464
+
Pro
CGG
[ENA]
¢þ
>WENV182954430
OKWA01001115
[OKWA] human gut metagenome; human gut
3049
2974
-
Pro
CGG
[ENA]
¢þ
>WENV182987961
OLAE01009429
[OLAE] human gut metagenome; human gut
1300
1375
+
Pro
CGG
[ENA]
¢þ
>WENV183132119
OLOB01000492
[OLOB] human gut metagenome; faeces
23234
23159
-
Pro
CGG
[ENA]
¢þ
>WENV183179525
OLPH01005624
[OLPH] human gut metagenome; faeces
1468
1393
-
Pro
CGG
[ENA]
¢þ
>WENV183205390
OLPZ01008132
[OLPZ] human gut metagenome; faeces
2096
2021
-
Pro
CGG
[ENA]
¢þ
>WENV183217556
OLQI01000646
[OLQI] human gut metagenome; faeces
7961
8036
+
Pro
CGG
[ENA]
¢þ
>WENV183407429
OMAC01000428
[OMAC] human gut metagenome; feces
8585
8660
+
Pro
CGG
[ENA]
¢þ
>WENV183427785
OMBN01000414
[OMBN] human gut metagenome; feces
8554
8629
+
Pro
CGG
[ENA]
¢þ
>WENV183428871
OMBO01000408
[OMBO] human gut metagenome; feces
21504
21429
-
Pro
CGG
[ENA]
¢þ
>WENV183473049
OMER01000429
[OMER] human gut metagenome; feces
8511
8586
+
Pro
CGG
[ENA]
¢þ
>WENV183493739
OMGJ01002339
[OMGJ] human gut metagenome; human gut
6778
6853
+
Pro
CGG
[ENA]
¢þ
>WENV183605773
OODN01000022
[OODN] human gut metagenome; human gut
143228
143153
-
Pro
CGG
[ENA]
¢þ
>WENV183788983
PPYF01372495
[PPYF] human gut metagenome; stool from patient with Crohn's disease
3270
3195
-
Pro
CGG
[ENA]
¢þ
>WENV183792362
PPYF01459244
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1514
1439
-
Pro
CGG
[ENA]
¢þ
>C181182005
CP029616
Bacillota
Ligilactobacillus salivarius DJ-sa-01 [CP029616]
1211007
1211082
+
Pro
CGG
-
¡û
>W09123186
ACGT01000028
Bacillota
Ligilactobacillus salivarius ATCC 11741 [ACGT]
63849
63774
-
Pro
CGG
[ENA]
¡û
>W1930011882
LXYY01000026
Bacillota
Ligilactobacillus salivarius KLW009 [LXYY]
8789
8864
+
Pro
CGG
[ENA]
¡û
>W1930011885
LXYZ01000089
Bacillota
Ligilactobacillus salivarius KLW008 [LXYZ]
10906
10831
-
Pro
CGG
[ENA]
¡û
>W1930011889
LXZC01000008
Bacillota
Ligilactobacillus salivarius KLW005 [LXZC]
32610
32685
+
Pro
CGG
[ENA]
¡û
>W1930011893
LXZF01000034
Bacillota
Ligilactobacillus salivarius KLW002 [LXZF]
10916
10841
-
Pro
CGG
[ENA]
¡û
>W1910649427
LXYX01000144
Bacillota
Ligilactobacillus salivarius KLW010 [LXYX]
15981
15906
-
Pro
CGG
[ENA]
¡û
>W1910649568
LXZA01000025
Bacillota
Ligilactobacillus salivarius KLW007 [LXZA]
8591
8666
+
Pro
CGG
[ENA]
¡û
>W1910649631
LXZB01000026
Bacillota
Ligilactobacillus salivarius KLW006 [LXZB]
8275
8350
+
Pro
CGG
[ENA]
¡û
>W1910649773
LXZD01000177
Bacillota
Ligilactobacillus salivarius KLW004 [LXZD]
8576
8651
+
Pro
CGG
[ENA]
¡û
>W1910649825
LXZE01000172
Bacillota
Ligilactobacillus salivarius KLW003 [LXZE]
8511
8586
+
Pro
CGG
[ENA]
¡û
>W1910649923
LXZH01000044
Bacillota
Ligilactobacillus salivarius KLF007 [LXZH]
15098
15023
-
Pro
CGG
[ENA]
¡û
>W1910649971
LXZJ01000059
Bacillota
Ligilactobacillus salivarius KLF005 [LXZJ]
8270
8345
+
Pro
CGG
[ENA]
¡û
>W1910650038
LXZK01000042
Bacillota
Ligilactobacillus salivarius KLF004 [LXZK]
8532
8607
+
Pro
CGG
[ENA]
¡û
>W1910650078
LXZL01000054
Bacillota
Ligilactobacillus salivarius KLF003 [LXZL]
10919
10844
-
Pro
CGG
[ENA]
¡û
>W1910650147
LXZM01000079
Bacillota
Ligilactobacillus salivarius KLF002 [LXZM]
8576
8651
+
Pro
CGG
[ENA]
¡û
>W1910650201
LXZO01000098
Bacillota
Ligilactobacillus salivarius KLA006 [LXZO]
15105
15030
-
Pro
CGG
[ENA]
¡û
>W1910650235
LXZP01000030
Bacillota
Ligilactobacillus salivarius KLA005 [LXZP]
15105
15030
-
Pro
CGG
[ENA]
¡û
>W1910650313
LXZQ01000043
Bacillota
Ligilactobacillus salivarius KLA004 [LXZQ]
15105
15030
-
Pro
CGG
[ENA]
¡û
>W1910650369
LXZR01000041
Bacillota
Ligilactobacillus salivarius KLA003 [LXZR]
15107
15032
-
Pro
CGG
[ENA]
¡û
>W1910650420
LXZS01000033
Bacillota
Ligilactobacillus salivarius KLA002 [LXZS]
15105
15030
-
Pro
CGG
[ENA]
¡û
>W1910650490
LXZT01000041
Bacillota
Ligilactobacillus salivarius KLA001 [LXZT]
15107
15032
-
Pro
CGG
[ENA]
¡û
>W1910874525
NDYW01000011
Bacillota
Ligilactobacillus salivarius L28 [NDYW]
8948
9023
+
Pro
CGG
[ENA]
¡û
>W1911569817
PCZA01000036
Bacillota
Lactobacillus sp. UMNPBX9 [PCZA]
7960
8035
+
Pro
CGG
[ENA]
¡û
>W1911570216
PCZH01000038
Bacillota
Lactobacillus sp. UMNPBX2 [PCZH]
10940
10865
-
Pro
CGG
[ENA]
¡û
>W1810070424
PECX01000001
Bacillota
Ligilactobacillus salivarius SGL 03 [PECX]
1564751
1564826
+
Pro
CGG
[ENA]
¡û
>W1810185980
PKGN01000034
Bacillota
Ligilactobacillus salivarius 290 [PKGN]
8301
8376
+
Pro
CGG
[ENA]
¡û
>W1810472395
QAGU01000006
Bacillota
Ligilactobacillus salivarius DS2_12 [QAGU]
114478
114403
-
Pro
CGG
[ENA]
¡û
>W1810472472
QAGV01000006
Bacillota
Ligilactobacillus salivarius DS11_12 [QAGV]
114478
114403
-
Pro
CGG
[ENA]
¡û
>W1810488221
QAZF01000006
Bacillota
Ligilactobacillus salivarius DS3_12 [QAZF]
8408
8483
+
Pro
CGG
[ENA]
¡û
>W1810488275
QAZG01000006
Bacillota
Ligilactobacillus salivarius DS13_12 [QAZG]
114221
114146
-
Pro
CGG
[ENA]
¡û
>W1810584353
QFAS01000006
Bacillota
Ligilactobacillus salivarius A3iob [QFAS]
8993
9068
+
Pro
CGG
[ENA]
¡û
>W1810797345
QRMK01000008
Bacillota
Ligilactobacillus salivarius AM09-40 [QRMK]
75050
74975
-
Pro
CGG
[ENA]
¡û
>W1810829795
QSLH01000003
Bacillota
Ligilactobacillus salivarius AM25-8 [QSLH]
8682
8757
+
Pro
CGG
[ENA]
¡û
>W1810838194
QSTB01000031
Bacillota
Ligilactobacillus salivarius OM08-20 [QSTB]
8997
9072
+
Pro
CGG
[ENA]
¡û
>C151030903
CP007646
Bacillota
Ligilactobacillus salivarius JCM1046 [CP007646]
254113
254188
+
Pro
CGG
[Ensembl]
¡û
>C151082282
CP011403
Bacillota
Ligilactobacillus salivarius str. Ren [CP011403]
230990
231065
+
Pro
CGG
[Ensembl]
¡û
>W10124242
AEBA01000015
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
8540
8615
+
Pro
CGG
[ENA]
¡û
>C10109019
CP002034
Bacillota
Ligilactobacillus salivarius CECT 5713 [CP002034]
232041
232116
+
Pro
CGG
[Ensembl]
¡û
>W1511441058
JUQA01000061
Bacillota
Ligilactobacillus salivarius 866_LSAL [JUQA]
23234
23159
-
Pro
CGG
[ENA]
¡û
>W1511443809
JUTI01000032
Bacillota
Ligilactobacillus salivarius 778_LSAL [JUTI]
7969
8044
+
Pro
CGG
[ENA]
¡û
>W1511448790
JVAF01000001
Bacillota
Ligilactobacillus salivarius 609_LSAL [JVAF]
7947
8022
+
Pro
CGG
[ENA]
¡û
>W11131130
AEBA01000015
Bacillota
Ligilactobacillus salivarius ACS-116-V-Col5a [AEBA]
8540
8615
+
Pro
CGG
[ENA]
¡û
>W11167255
AFMN01000001
Bacillota
Ligilactobacillus salivarius NIAS840 [AFMN]
114064
113989
-
Pro
CGG
[ENA]
¡û
>W11168567
AFOI01000001
Bacillota
Ligilactobacillus salivarius GJ-24 [AFOI]
66427
66352
-
Pro
CGG
[ENA]
¡û
>W121045108
AICL01000003
Bacillota
Ligilactobacillus salivarius SMXD51 [AICL]
184127
184202
+
Pro
CGG
[ENA]
¡û
>W1610031406
AYYT01000008
Bacillota
Ligilactobacillus salivarius DSM 20555 = ATCC 11741 [AYYT]
63878
63803
-
Pro
CGG
[ENA]
¡û
>W1730023706
LXZG01000094
Bacillota
Ligilactobacillus salivarius [LXZG]
8795
8870
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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