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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181070 (67 seq.)
>W1710865652
LMGV01000009
Actinomycetota
Nocardioides sp. Root614 [LMGV]
5991
6067
+
Met
CAT
[ENA]
¡û
>W1710866351
LMHJ01000006
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
5991
6067
+
Met
CAT
[ENA]
¡û
>W1710872658
LMMD01000014
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
207368
207292
-
Met
CAT
[ENA]
¡û
>W1710873658
LMMY01000013
Actinomycetota
Aeromicrobium sp. Leaf272 [LMMY]
499271
499195
-
Met
CAT
[ENA]
¡û
>W1710874067
LMNH01000003
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
851064
851138
+
Met
CAT
[ENA]
¡û
>W1710874227
LMNK01000004
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
63098
63022
-
Met
CAT
[ENA]
¡û
>W1710874301
LMNM01000001
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
1721885
1721809
-
Met
CAT
[ENA]
¡û
>W1710874856
LMNY01000001
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
1605141
1605215
+
Met
CAT
[ENA]
¡û
>W1710880664
LMSM01000006
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
19480
19406
-
Met
CAT
[ENA]
¡û
>W1710880944
LMSR01000017
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
241061
240987
-
Met
CAT
[ENA]
¡û
>W1711125344
LUNF01000060
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
13660
13736
+
Met
CAT
[ENA]
¡û
>W1711125404
LUNG01000047
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
11054
10978
-
Met
CAT
[ENA]
¡û
>W1711125423
LUNH01000013
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
74135
74211
+
Met
CAT
[ENA]
¡û
>W1711125475
LUNI01000010
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
36648
36724
+
Met
CAT
[ENA]
¡û
>W1711125511
LUNJ01000001
Actinomycetota
Aeromicrobium sp. REDSEA-S44_B1 [LUNJ]
105491
105415
-
Met
CAT
[ENA]
¡û
>W1712084132
NHQT01000006
Actinomycetota
Nocardioides sp. XL1 [NHQT]
17460
17384
-
Met
CAT
[ENA]
¡û
>W131165632
ARBS01000015
Actinomycetota
Longispora albida DSM 44784 [ARBS]
28392
28468
+
Met
CAT
[ENA]
¡û
>W131190810
ASEP01000116
Actinomycetota
Nocardioides sp. CF8 [ASEP]
31868
31944
+
Met
CAT
[ENA]
¡û
>W131229401
AUGT01000023
Actinomycetota
Nocardioides halotolerans DSM 19273 [AUGT]
100141
100215
+
Met
CAT
[ENA]
¡û
>C015195
CP000509
Actinomycetota
Nocardioides sp. JS614 [CP000509]
2095934
2096010
+
Met
CAT
[Ensembl]
¡û
>WENV180690371
OCZS010004246
[OCZS] soil metagenome; soil
1903
1829
-
Ile2
CAT
[ENA]
¢þ
>WENV180690727
OCZS010020461
[OCZS] soil metagenome; soil
569
645
+
Ile2
CAT
[ENA]
¢þ
>WENV181162392
OEIN01121802
[OEIN] soil metagenome; soil
164
90
-
Ile2
CAT
[ENA]
¢þ
>W141241389
CAHG01000016
Actinomycetota
Aeromicrobium massiliense JC14 [CAHG]
97369
97445
+
Met
CAT
[ENA]
¡û
>WENV170552171
CXWJ01042489
[CXWJ] wastewater metagenome; activated sludge
757
681
-
Met
CAT
[ENA]
¢þ
>WENV170728847
LULF01001425
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
4394
4470
+
Met
CAT
[ENA]
¢þ
>WENV170729582
LULG01000001
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
74135
74211
+
Met
CAT
[ENA]
¢þ
>WENV170732276
LULI01028782
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
115
191
+
Met
CAT
[ENA]
¢þ
>WENV170732531
LULJ01000068
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
11054
10978
-
Met
CAT
[ENA]
¢þ
>WENV170735792
LULL01013058
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
29
105
+
Met
CAT
[ENA]
¢þ
>WENV170736186
LULM01000041
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
13660
13736
+
Met
CAT
[ENA]
¢þ
>WENV170738513
LULP01000626
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
12598
12674
+
Met
CAT
[ENA]
¢þ
>WENV170758968
LUMS01000655
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
5188
5264
+
Met
CAT
[ENA]
¢þ
>WENV170759587
LUMT01000022
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
36648
36724
+
Met
CAT
[ENA]
¢þ
>WENV170761305
LUMV01000006
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
105491
105415
-
Met
CAT
[ENA]
¢þ
>WENV170762177
LUMW01001757
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
164
240
+
Met
CAT
[ENA]
¢þ
>C191158874
CP038267
Actinomycetota
Nocardioides euryhalodurans MMS17-SY117 [CP038267]
948285
948210
-
Met
CAT
-
¡û
>W141815879
JQJL01000019
Actinomycetota
Nocardioides sp. UNC345MFTsu5.1 [JQJL]
13800
13724
-
Met
CAT
[ENA]
¡û
>W09103283
AAJB01000084
Actinomycetota
Nocardioides sp. JS614 [AAJB]
13883
13807
-
Met
CAT
[ENA]
¡û
>W09109283
ABUC01000013
Actinomycetota
Kribbella flavida DSM 17836 [ABUC]
176400
176476
+
Met
CAT
[ENA]
¡û
>W1911672128
QGDD01000008
Actinomycetota
Nocardioides silvaticus CCTCC AB 2018079 [QGDD]
13558
13482
-
Met
CAT
[ENA]
¡û
>W1911823586
QZVR01000036
Actinomycetota
Nocardioides ferulae SZ4R5S7 [QZVR]
11082
11008
-
Met
CAT
[ENA]
¡û
>W1810462634
PZYX01000009
Actinomycetota
Nocardioides allogilvus KCTC 49020 [PZYX]
8336
8261
-
Met
CAT
[ENA]
¡û
>SRA1007431
SRR020488.448178
Microbial community gene content and expression in the Central North Pacific Gyre, Station ALOHA, HOT186 (SRP001041)
194
118
-
Met
CAT
[SRA]
>W1810626197
QHKX01000003
Actinomycetota
Nocardioides solisilvae Ka25 [QHKX]
5640
5566
-
Met
CAT
[ENA]
¡û
>C10107951
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
2631722
2631798
+
Met
CAT
[Ensembl]
¡û
>W11187383
CAEF01000415
Actinomycetota
Aeromicrobium massiliense JC14 [CAEF]
17776
17852
+
Met
CAT
[ENA]
¡û
>C161036387
CP011502
Actinomycetota
Aeromicrobium erythreum AR18 [CP011502]
2375895
2375971
+
Met
CAT
[Ensembl]
¡û
>C161082879
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
3937279
3937203
-
Met
CAT
[Ensembl]
¡û
>W1610727998
LMGV01000009
Actinomycetota
Nocardioides sp. Root614 [LMGV]
5991
6067
+
Met
CAT
[ENA]
¡û
>W1610728697
LMHJ01000006
Actinomycetota
Nocardioides sp. Root682 [LMHJ]
5991
6067
+
Met
CAT
[ENA]
¡û
>W1610735004
LMMD01000014
Actinomycetota
Aeromicrobium sp. Leaf245 [LMMD]
207368
207292
-
Met
CAT
[ENA]
¡û
>W1610736004
LMMY01000013
Actinomycetota
Aeromicrobium sp. Leaf272 [LMMY]
499271
499195
-
Met
CAT
[ENA]
¡û
>W1610736413
LMNH01000003
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
851064
851138
+
Met
CAT
[ENA]
¡û
>W1610736573
LMNK01000004
Actinomycetota
Aeromicrobium sp. Leaf289 [LMNK]
63098
63022
-
Met
CAT
[ENA]
¡û
>W1610736647
LMNM01000001
Actinomycetota
Aeromicrobium sp. Leaf291 [LMNM]
1721885
1721809
-
Met
CAT
[ENA]
¡û
>W1610737202
LMNY01000001
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
1605141
1605215
+
Met
CAT
[ENA]
¡û
>W1610743010
LMSM01000006
Actinomycetota
Nocardioides sp. Soil774 [LMSM]
19480
19406
-
Met
CAT
[ENA]
¡û
>W1610743290
LMSR01000017
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
241061
240987
-
Met
CAT
[ENA]
¡û
>W1610936277
LUNF01000060
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
13660
13736
+
Met
CAT
[ENA]
¡û
>W1610936337
LUNG01000047
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
11054
10978
-
Met
CAT
[ENA]
¡û
>W1610936356
LUNH01000013
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
74135
74211
+
Met
CAT
[ENA]
¡û
>W1610936408
LUNI01000010
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
36648
36724
+
Met
CAT
[ENA]
¡û
>W1610936444
LUNJ01000001
Actinomycetota
Aeromicrobium sp. REDSEA-S44_B1 [LUNJ]
105491
105415
-
Met
CAT
[ENA]
¡û
>WENV080843
ABEF01006373
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
290
214
-
Met
CAT
[ENA]
>WENV086968
CAAM02028534
Fossil microbiome from Mammuthus primigenius
20
96
+
Met
CAT
[ENA]
>W1710523590
FNIC01000007
Actinomycetota
Nocardioides szechwanensis [FNIC]
25457
25381
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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