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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181071 (21 seq.)
>W1711125346
LUNF01000060
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
4894
4818
-
Val
TAC
[ENA]
¡û
>W1711125403
LUNG01000047
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
19886
19962
+
Val
TAC
[ENA]
¡û
>W1711125428
LUNH01000013
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
65303
65227
-
Val
TAC
[ENA]
¡û
>W1711125480
LUNI01000010
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
27816
27740
-
Val
TAC
[ENA]
¡û
>W1711125510
LUNJ01000001
Actinomycetota
Aeromicrobium sp. REDSEA-S44_B1 [LUNJ]
114323
114399
+
Val
TAC
[ENA]
¡û
>WENV170728852
LULF01001503
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
1905
1829
-
Val
TAC
[ENA]
¢þ
>WENV170729587
LULG01000001
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
65303
65227
-
Val
TAC
[ENA]
¢þ
>WENV170732530
LULJ01000068
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
19886
19962
+
Val
TAC
[ENA]
¢þ
>WENV170735570
LULL01004399
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
2063
2139
+
Val
TAC
[ENA]
¢þ
>WENV170736188
LULM01000041
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
4894
4818
-
Val
TAC
[ENA]
¢þ
>WENV170738515
LULP01000626
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
3953
3877
-
Val
TAC
[ENA]
¢þ
>WENV170759095
LUMS01002276
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
1181
1105
-
Val
TAC
[ENA]
¢þ
>WENV170759592
LUMT01000022
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
27816
27740
-
Val
TAC
[ENA]
¢þ
>WENV170761304
LUMV01000006
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
114323
114399
+
Val
TAC
[ENA]
¢þ
>WENV170762012
LUMW01000441
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
2105
2029
-
Val
TAC
[ENA]
¢þ
>C161036404
CP011502
Actinomycetota
Aeromicrobium erythreum AR18 [CP011502]
2367083
2367007
-
Val
TAC
[Ensembl]
¡û
>W1610936279
LUNF01000060
Actinomycetota
Aeromicrobium sp. REDSEA-S32_B7 [LUNF]
4894
4818
-
Val
TAC
[ENA]
¡û
>W1610936336
LUNG01000047
Actinomycetota
Aeromicrobium sp. REDSEA-S35_B1 [LUNG]
19886
19962
+
Val
TAC
[ENA]
¡û
>W1610936361
LUNH01000013
Actinomycetota
Aeromicrobium sp. REDSEA-S38_B2 [LUNH]
65303
65227
-
Val
TAC
[ENA]
¡û
>W1610936413
LUNI01000010
Actinomycetota
Aeromicrobium sp. REDSEA-S42_B4 [LUNI]
27816
27740
-
Val
TAC
[ENA]
¡û
>W1610936443
LUNJ01000001
Actinomycetota
Aeromicrobium sp. REDSEA-S44_B1 [LUNJ]
114323
114399
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK