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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181132 (70 seq.)
>W1711720779
MTIX01000002
Bacillota
Shouchella patagoniensis [MTIX]
2633003
2633079
+
Arg
ACG
[ENA]
¡û
>C002659
AP006627
Bacillota
Shouchella clausii KSM-K16 [AP006627]
142523
142599
+
Arg
ACG
[Ensembl]
¡û
>C002677
AP006627
Bacillota
Shouchella clausii KSM-K16 [AP006627]
932932
933008
+
Arg
ACG
[Ensembl]
¡û
>C002699
AP006627
Bacillota
Shouchella clausii KSM-K16 [AP006627]
1448083
1448156
+
Arg
ACG
[Ensembl]
¡û
>W141054058
AODD01000052
Bacillota
Listeria grandensis FSL F6-971 [AODD]
3525
3599
+
Arg
ACG
[ENA]
¡û
>W141054102
AODE01000040
Bacillota
Listeria cornellensis FSL F6-969 [AODE]
764
838
+
Arg
ACG
[ENA]
¡û
>W141054497
AODK01000095
Bacillota
Listeria rocourtiae FSL F6-920 [AODK]
124
50
-
Arg
ACG
[ENA]
¡û
>W141054498
AODK01000111
Bacillota
Listeria rocourtiae FSL F6-920 [AODK]
433
359
-
Arg
ACG
[ENA]
¡û
>W141054544
AODL01000054
Bacillota
Listeria riparia FSL S10-1204 [AODL]
786
860
+
Arg
ACG
[ENA]
¡û
>WENV170208832
CEPV01017692
[CEPV] marine metagenome genome assembly TARA_039_MES_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
59018
59094
+
Arg
ACG
[ENA]
¢þ
>WENV170220722
CEPZ01195750
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
780
856
+
Arg
ACG
[ENA]
¢þ
>C181042142
CP019985
Bacillota
Shouchella clausii DSM 8716 [CP019985]
4382237
4382162
-
Arg
ACG
-
¡û
>C181042158
CP019985
Bacillota
Shouchella clausii DSM 8716 [CP019985]
1226937
1226861
-
Arg
ACG
-
¡û
>C181042176
CP019985
Bacillota
Shouchella clausii DSM 8716 [CP019985]
422656
422580
-
Arg
ACG
-
¡û
>W141695114
JMCA01000021
Bacillota
Shouchella clausii [JMCA]
398
322
-
Arg
ACG
[ENA]
¡û
>W141695137
JMCA01000028
Bacillota
Shouchella clausii [JMCA]
1901
1976
+
Arg
ACG
[ENA]
¡û
>W141695147
JMCA01000030
Bacillota
Shouchella clausii [JMCA]
692
616
-
Arg
ACG
[ENA]
¡û
>W1910178394
BJEY01000013
Bacillota
Listeria newyorkensis Ln2-1 [BJEY]
97135
97061
-
Arg
ACG
[ENA]
¡û
>W1910496484
FXUT01000001
Bacillota
Listeria costaricensis 102 [FXUT]
584
658
+
Arg
ACG
[ENA]
¡û
>W1910777235
MPDH01000012
Bacillota
Listeria newyorkensis F1604011-044 [MPDH]
97166
97092
-
Arg
ACG
[ENA]
¡û
>W1910896526
NFZO01000003
Bacillota
Shouchella clausii B106 [NFZO]
416747
416672
-
Arg
ACG
[ENA]
¡û
>W1910896535
NFZO01000003
Bacillota
Shouchella clausii B106 [NFZO]
801
725
-
Arg
ACG
[ENA]
¡û
>W1911144213
NPBN01000074
Bacillota
Shouchella clausii Feb-20 [NPBN]
86071
85996
-
Arg
ACG
[ENA]
¡û
>W1911144644
NPBW01000001
Bacillota
Shouchella clausii 7529 [NPBW]
1761
1836
+
Arg
ACG
[ENA]
¡û
>W1911144719
NPBX01000064
Bacillota
Shouchella clausii 7535-K [NPBX]
96938
96863
-
Arg
ACG
[ENA]
¡û
>W1911144747
NPBX01000127
Bacillota
Shouchella clausii 7535-K [NPBX]
2932
3008
+
Arg
ACG
[ENA]
¡û
>W1911144755
NPBX01000137
Bacillota
Shouchella clausii 7535-K [NPBX]
709
785
+
Arg
ACG
[ENA]
¡û
>W1911144870
NPCA01000021
Bacillota
Shouchella clausii 7537-T [NPCA]
374
449
+
Arg
ACG
[ENA]
¡û
>W1911144886
NPCA01000031
Bacillota
Shouchella clausii 7537-T [NPCA]
38543
38619
+
Arg
ACG
[ENA]
¡û
>W1911144908
NPCA01000073
Bacillota
Shouchella clausii 7537-T [NPCA]
723
799
+
Arg
ACG
[ENA]
¡û
>W1911144936
NPCB01000048
Bacillota
Shouchella clausii 7538 [NPCB]
96863
96788
-
Arg
ACG
[ENA]
¡û
>W1911144966
NPCB01000129
Bacillota
Shouchella clausii 7538 [NPCB]
7987
8063
+
Arg
ACG
[ENA]
¡û
>W1911144977
NPCB01000138
Bacillota
Shouchella clausii 7538 [NPCB]
614
690
+
Arg
ACG
[ENA]
¡û
>W1911145007
NPCC01000020
Bacillota
Shouchella clausii 7539 [NPCC]
614
690
+
Arg
ACG
[ENA]
¡û
>W1911145023
NPCC01000023
Bacillota
Shouchella clausii 7539 [NPCC]
1
74
+
Arg
ACG
[ENA]
¡û
>W1911145156
NPCE01000114
Bacillota
Shouchella clausii Feb-40 [NPCE]
160
84
-
Arg
ACG
[ENA]
¡û
>W1911145210
NPCF01000071
Bacillota
Shouchella clausii 7541 [NPCF]
1619
1694
+
Arg
ACG
[ENA]
¡û
>W1911145254
NPCG01000010
Bacillota
Shouchella clausii 7543 [NPCG]
180391
180316
-
Arg
ACG
[ENA]
¡û
>W1911145272
NPCG01000022
Bacillota
Shouchella clausii 7543 [NPCG]
602
526
-
Arg
ACG
[ENA]
¡û
>W1911145300
NPCG01000073
Bacillota
Shouchella clausii 7543 [NPCG]
308
232
-
Arg
ACG
[ENA]
¡û
>W1911145318
NPCH01000085
Bacillota
Shouchella clausii 7547-G [NPCH]
19517
19444
-
Arg
ACG
[ENA]
¡û
>W1911145365
NPCH01000157
Bacillota
Shouchella clausii 7547-G [NPCH]
158
82
-
Arg
ACG
[ENA]
¡û
>W1911146499
NPDF01000059
Bacillota
Shouchella clausii Jan-94 [NPDF]
27064
26989
-
Arg
ACG
[ENA]
¡û
>W1911146503
NPDF01000069
Bacillota
Shouchella clausii Jan-94 [NPDF]
4921
4997
+
Arg
ACG
[ENA]
¡û
>W1911146512
NPDF01000080
Bacillota
Shouchella clausii Jan-94 [NPDF]
614
690
+
Arg
ACG
[ENA]
¡û
>W1911149889
NPGD01000044
Bacillota
Bacillus sp. 7520-S [NPGD]
3043
2968
-
Arg
ACG
[ENA]
¡û
>W1911149912
NPGD01000134
Bacillota
Bacillus sp. 7520-S [NPGD]
168
92
-
Arg
ACG
[ENA]
¡û
>W1911149922
NPGD01000152
Bacillota
Bacillus sp. 7520-S [NPGD]
304
228
-
Arg
ACG
[ENA]
¡û
>W1911159621
NPMP01000026
Bacillota
Shouchella clausii 7522 [NPMP]
278
353
+
Arg
ACG
[ENA]
¡û
>W1911709384
QPKR01000001
Bacillota
Listeria sp. SHR_NRA_18 [QPKR]
708
782
+
Arg
ACG
[ENA]
¡û
>C151094990
CP012475
Bacillota
Shouchella clausii ENTPro [CP012475]
1883803
1883727
-
Arg
ACG
-
¡û
>C151095008
CP012475
Bacillota
Shouchella clausii ENTPro [CP012475]
1106023
1105947
-
Arg
ACG
-
¡û
>C151095030
CP012475
Bacillota
Shouchella clausii ENTPro [CP012475]
602529
602454
-
Arg
ACG
-
¡û
>W1510001387
AZHN01000092
Bacillota
Listeria newyorkensis 1903 [AZHN]
237
163
-
Arg
ACG
[ENA]
¡û
>W1511221014
JNEZ01000047
Bacillota
Listeriaceae bacterium FSL A5-0209 [JNEZ]
196731
196657
-
Arg
ACG
[ENA]
¡û
>W1511221070
JNFA01000029
Bacillota
Listeria booriae FSL A5-0281 [JNFA]
746
820
+
Arg
ACG
[ENA]
¡û
>W1511221098
JNFB01000002
Bacillota
Listeria newyorkensis FSL M6-0635 [JNFB]
658
732
+
Arg
ACG
[ENA]
¡û
>W1610041696
BAXC01000150
Bacillota
Bacillus sp. JCM 19041 [BAXC]
418
342
-
Arg
ACG
[ENA]
¡û
>W1610041712
BAXC01000274
Bacillota
Bacillus sp. JCM 19041 [BAXC]
599
675
+
Arg
ACG
[ENA]
¡û
>W1610074626
BCXJ01000002
Bacillota
Shouchella clausii [BCXJ]
769995
769920
-
Arg
ACG
[ENA]
¡û
>W1610074664
BCXJ01000010
Bacillota
Shouchella clausii [BCXJ]
677
601
-
Arg
ACG
[ENA]
¡û
>W1610074675
BCXJ01000013
Bacillota
Shouchella clausii [BCXJ]
388
312
-
Arg
ACG
[ENA]
¡û
>W1710038790
BAXC01000150
Bacillota
Bacillus sp. JCM 19041 [BAXC]
418
342
-
Arg
ACG
[ENA]
¡û
>W1710038806
BAXC01000274
Bacillota
Bacillus sp. JCM 19041 [BAXC]
599
675
+
Arg
ACG
[ENA]
¡û
>W1710072441
BCXJ01000002
Bacillota
Shouchella clausii [BCXJ]
769995
769920
-
Arg
ACG
[ENA]
¡û
>W1710072479
BCXJ01000010
Bacillota
Shouchella clausii [BCXJ]
677
601
-
Arg
ACG
[ENA]
¡û
>W1710072490
BCXJ01000013
Bacillota
Shouchella clausii [BCXJ]
388
312
-
Arg
ACG
[ENA]
¡û
>W1710591424
FRBS01000001
Bacillota
Shouchella rhizosphaerae [FRBS]
2531
2606
+
Arg
ACG
[ENA]
¡û
>W1710591455
FRBS01000007
Bacillota
Shouchella rhizosphaerae [FRBS]
241911
241987
+
Arg
ACG
[ENA]
¡û
>W1710591479
FRBS01000013
Bacillota
Shouchella rhizosphaerae [FRBS]
289
213
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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