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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181649 (49 seq.)
>W1710785724
LJIC01000091
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
8063
7979
-
Leu
TAG
[ENA]
¡û
>W1711169184
LVYV01000003
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
193788
193704
-
Leu
TAG
[ENA]
¡û
>W1711502234
MKSM01000018
Alphaproteobacteria
Nitrobacter sp. 62-23 [MKSM]
5340
5256
-
Leu
TAG
[ENA]
¡û
>W1711783530
MVOD01000020
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
21243
21327
+
Leu
TAG
[ENA]
¡û
>W1711795371
MWPQ01000039
Alphaproteobacteria
Nitrobacter vulgaris [MWPQ]
81407
81323
-
Leu
TAG
[ENA]
¡û
>W131226875
AUES01000004
Alphaproteobacteria
Bradyrhizobium sp. URHA0002 [AUES]
151021
151105
+
Leu
TAG
[ENA]
¡û
>C014946
CP000319
Alphaproteobacteria
Nitrobacter hamburgensis X14 [CP000319]
2482912
2482828
-
Leu
TAG
[Ensembl]
¡û
>C015379
CP000115
Alphaproteobacteria
Nitrobacter winogradskyi Nb-255 [CP000115]
2085621
2085537
-
Leu
TAG
[Ensembl]
¡û
>C018890
CP000301
Alphaproteobacteria
Rhodopseudomonas palustris [CP000301]
2593815
2593899
+
Leu
TAG
[Ensembl]
¡û
>C019008
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
3356522
3356438
-
Leu
TAG
[Ensembl]
¡û
>C019039
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
2939436
2939520
+
Leu
TAG
[Ensembl]
¡û
>w013002
AAMY01000019
Alphaproteobacteria
Nitrobacter sp. Nb-311A [AAMY]
57859
57943
+
Leu
TAG
[ENA]
¡û
>w001301
AAAF01000014
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
163632
163716
+
Leu
TAG
[ENA]
¡û
>WENV181401908
OFTX01019191
[OFTX] sludge metagenome; sludge
273
357
+
Leu
TAG
[ENA]
¢þ
>W08007835
ABKN01000001
Alphaproteobacteria
Afipia carboxidovorans OM5 [ABKN]
1822654
1822738
+
Leu
TAG
[ENA]
¡û
>W141223320
BADD01000501
Alphaproteobacteria
Rhodopseudomonas sp. B29 [BADD]
6945
6861
-
Leu
TAG
[ENA]
¡û
>WENV183636440
OOKD01001298
[OOKD] human gut metagenome; Skin biopsy
2414
2498
+
Leu
TAG
[ENA]
¢þ
>WENV183740656
PJUF01005503
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
315
399
+
Leu
TAG
[ENA]
¢þ
>WENV183745193
PJUL01005116
[PJUL] feces metagenome; Chicken feces enriched on filter paper
720
636
-
Leu
TAG
[ENA]
¢þ
>WENV170709230
LNFM01000206
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
263780
263696
-
Leu
TAG
[ENA]
¢þ
>C181041874
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
3271689
3271605
-
Leu
TAG
-
¡û
>C181041920
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
3296580
3296496
-
Leu
TAG
-
¡û
>W09103022
AAIS01000006
Alphaproteobacteria
Nitrobacter hamburgensis X14 [AAIS]
143348
143432
+
Leu
TAG
[ENA]
¡û
>W09104373
AALQ01000003
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
609137
609053
-
Leu
TAG
[ENA]
¡û
>W09104412
AALR01000004
Alphaproteobacteria
Rhodopseudomonas palustris BisB18 [AALR]
223995
223911
-
Leu
TAG
[ENA]
¡û
>W09107578
ABJR01000001
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
1552495
1552411
-
Leu
TAG
[ENA]
¡û
>W1910182845
BJNF01000050
Alphaproteobacteria
Nitrobacter winogradskyi NBRC 14297 [BJNF]
31667
31583
-
Leu
TAG
[ENA]
¡û
>W1910548951
FZOX01000002
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
1118635
1118551
-
Leu
TAG
[ENA]
¡û
>C09108134
CP001196
Alphaproteobacteria
Afipia carboxidovorans OM5 OM5; ATCC 49405 [CP001196]
1822340
1822424
+
Leu
TAG
-
¡û
>W1911219131
NRSI01000001
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
234483
234567
+
Leu
TAG
[ENA]
¡û
>W1911760571
QWVU01000030
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
68978
68894
-
Leu
TAG
[ENA]
¡û
>W1911809174
QYYC01000036
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
21284
21368
+
Leu
TAG
[ENA]
¡û
>W1810576969
QENW01000013
Alphaproteobacteria
Tardiphaga sp. OV697 [QENW]
116730
116814
+
Leu
TAG
[ENA]
¡û
>W1810679430
QKQS01000013
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
256779
256695
-
Leu
TAG
[ENA]
¡û
>W1810784352
QRAQ01000001
Alphaproteobacteria
Tardiphaga sp. CF115 [QRAQ]
36275
36359
+
Leu
TAG
[ENA]
¡û
>W1810787489
QRDT01000001
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
12835
12919
+
Leu
TAG
[ENA]
¡û
>W1810884386
QUMP01000001
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
12835
12919
+
Leu
TAG
[ENA]
¡û
>W10112838
ADFI01000030
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
17214
17130
-
Leu
TAG
[ENA]
¡û
>C10110770
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
3567960
3567876
-
Leu
TAG
[Ensembl]
¡û
>C11116284
CP002821
Alphaproteobacteria
Afipia carboxidovorans OM4 [CP002821]
2303267
2303183
-
Leu
TAG
[Ensembl]
¡û
>W11116065
ADFI01000030
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
17214
17130
-
Leu
TAG
[ENA]
¡û
>C11118751
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
2671639
2671723
+
Leu
TAG
[Ensembl]
¡û
>W1511625945
LCZM01000190
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
12408
12324
-
Leu
TAG
[ENA]
¡û
>C121003004
CP002826
Alphaproteobacteria
Afipia carboxidovorans OM5 [CP002826]
2302146
2302062
-
Leu
TAG
-
¡û
>W1610649530
LJIC01000091
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
8063
7979
-
Leu
TAG
[ENA]
¡û
>W1610978979
LVYV01000003
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
193788
193704
-
Leu
TAG
[ENA]
¡û
>W1710536656
FNTI01000002
Alphaproteobacteria
Bradyrhizobium lablabi [FNTI]
65446
65530
+
Leu
TAG
[ENA]
¡û
>W1710540673
FNWZ01000003
Alphaproteobacteria
Tardiphaga sp. OK245 [FNWZ]
856505
856421
-
Leu
TAG
[ENA]
¡û
>W1710568417
FOTP01000002
Alphaproteobacteria
Bradyrhizobium sp. NFR13 [FOTP]
49440
49524
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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