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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181660 (100 seq.)
>C015869
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
4811268
4811184
-
Tyr
GTA
[Ensembl]
¡û
>WENV181322841
OFKV01001320
[OFKV] marine metagenome; sea ice
1757
1673
-
Tyr
GTA
[ENA]
¢þ
>W141223727
BAEK01000045
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
20461
20545
+
Tyr
GTA
[ENA]
¡û
>W141223781
BAEM01000051
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
391
307
-
Tyr
GTA
[ENA]
¡û
>W141223859
BAEO01000045
Gammaproteobacteria
Paraglaciecola arctica BSs20135 [BAEO]
3438
3522
+
Tyr
GTA
[ENA]
¡û
>W141223935
BAEP01000082
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
613
529
-
Tyr
GTA
[ENA]
¡û
>W141224006
BAER01000060
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
22890
22974
+
Tyr
GTA
[ENA]
¡û
>W141224076
BAES01000085
Gammaproteobacteria
Paraglaciecola psychrophila 170 [BAES]
3066
3150
+
Tyr
GTA
[ENA]
¡û
>W141242114
CAHY01000081
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
3923
4007
+
Tyr
GTA
[ENA]
¡û
>WENV182540762
OJAP01006975
[OJAP] seawater metagenome; Sea water
294
378
+
Tyr
GTA
[ENA]
¢þ
>WENV182541186
OJAS01001856
[OJAS] seawater metagenome; Sea water
1527
1443
-
Tyr
GTA
[ENA]
¢þ
>WENV182542668
OJAZ01000412
[OJAZ] seawater metagenome; Sea water
19996
20080
+
Tyr
GTA
[ENA]
¢þ
>WENV182542805
OJAZ01002791
[OJAZ] seawater metagenome; Sea water
3958
4042
+
Tyr
GTA
[ENA]
¢þ
>WENV182543515
OJBB01001830
[OJBB] seawater metagenome; Sea water
3958
4042
+
Tyr
GTA
[ENA]
¢þ
>WENV182546922
OJBQ01003583
[OJBQ] seawater metagenome; Sea water
476
392
-
Tyr
GTA
[ENA]
¢þ
>WENV182549930
OJBZ01000514
[OJBZ] seawater metagenome; Sea water
258
174
-
Tyr
GTA
[ENA]
¢þ
>WENV182550014
OJBZ01001687
[OJBZ] seawater metagenome; Sea water
6329
6413
+
Tyr
GTA
[ENA]
¢þ
>WENV182551111
OJCB01022708
[OJCB] seawater metagenome; Sea water
927
843
-
Tyr
GTA
[ENA]
¢þ
>WENV182551610
OJCE01002341
[OJCE] seawater metagenome; Sea water
286
370
+
Tyr
GTA
[ENA]
¢þ
>WENV182551686
OJCG01000742
[OJCG] seawater metagenome; Sea water
1301
1217
-
Tyr
GTA
[ENA]
¢þ
>WENV182552465
OJCK01000211
[OJCK] seawater metagenome; Sea water
26197
26281
+
Tyr
GTA
[ENA]
¢þ
>WENV182554886
OJCX01001079
[OJCX] seawater metagenome; Sea water
1535
1451
-
Tyr
GTA
[ENA]
¢þ
>WENV182555182
OJCY01007981
[OJCY] seawater metagenome; Sea water
509
425
-
Tyr
GTA
[ENA]
¢þ
>WENV182555771
OJDD01000525
[OJDD] seawater metagenome; Sea water
6608
6524
-
Tyr
GTA
[ENA]
¢þ
>WENV182557014
OJDI01000317
[OJDI] seawater metagenome; Sea water
19982
20066
+
Tyr
GTA
[ENA]
¢þ
>WENV182557244
OJDI01003223
[OJDI] seawater metagenome; Sea water
509
425
-
Tyr
GTA
[ENA]
¢þ
>WENV182558686
OJDN01000685
[OJDN] seawater metagenome; Sea water
258
174
-
Tyr
GTA
[ENA]
¢þ
>WENV182560219
OJDT01009474
[OJDT] seawater metagenome; Sea water
62
146
+
Tyr
GTA
[ENA]
¢þ
>WENV182561540
OJDW01005162
[OJDW] seawater metagenome; Sea water
598
682
+
Tyr
GTA
[ENA]
¢þ
>WENV182562296
OJDZ01000565
[OJDZ] seawater metagenome; Sea water
19996
20080
+
Tyr
GTA
[ENA]
¢þ
>WENV182562492
OJDZ01004855
[OJDZ] seawater metagenome; Sea water
509
425
-
Tyr
GTA
[ENA]
¢þ
>WENV182565112
OJEG01002144
[OJEG] seawater metagenome; Sea water
1239
1155
-
Tyr
GTA
[ENA]
¢þ
>WENV182566842
OJEM01011751
[OJEM] seawater metagenome; Sea water
151
67
-
Tyr
GTA
[ENA]
¢þ
>WENV182567869
OJEP01001015
[OJEP] seawater metagenome; Sea water
254
170
-
Tyr
GTA
[ENA]
¢þ
>WENV182568113
OJEQ01000514
[OJEQ] seawater metagenome; Sea water
286
370
+
Tyr
GTA
[ENA]
¢þ
>WENV182568225
OJER01006628
[OJER] seawater metagenome; Sea water
509
425
-
Tyr
GTA
[ENA]
¢þ
>WENV182570659
OJFE01000853
[OJFE] seawater metagenome; Sea water
134
218
+
Tyr
GTA
[ENA]
¢þ
>WENV182571054
OJFG01000157
[OJFG] seawater metagenome; Sea water
797
713
-
Tyr
GTA
[ENA]
¢þ
>WENV182571393
OJFH01001197
[OJFH] seawater metagenome; Sea water
692
608
-
Tyr
GTA
[ENA]
¢þ
>WENV182572144
OJFL01000531
[OJFL] seawater metagenome; Sea water
18785
18869
+
Tyr
GTA
[ENA]
¢þ
>WENV182572772
OJFM01013313
[OJFM] seawater metagenome; Sea water
621
705
+
Tyr
GTA
[ENA]
¢þ
>WENV182572775
OJFM01013313
[OJFM] seawater metagenome; Sea water
254
170
-
Tyr
GTA
[ENA]
¢þ
>WENV182573466
OJFP01002165
[OJFP] seawater metagenome; Sea water
6966
7050
+
Tyr
GTA
[ENA]
¢þ
>WENV182574676
OJFS01000393
[OJFS] seawater metagenome; Sea water
17021
17105
+
Tyr
GTA
[ENA]
¢þ
>WENV182574815
OJFS01002225
[OJFS] seawater metagenome; Sea water
4034
4118
+
Tyr
GTA
[ENA]
¢þ
>WENV182576856
OJFZ01000755
[OJFZ] seawater metagenome; Sea water
134
218
+
Tyr
GTA
[ENA]
¢þ
>WENV182576934
OJGB01000979
[OJGB] seawater metagenome; Sea water
396
312
-
Tyr
GTA
[ENA]
¢þ
>WENV182577739
OJGH01005865
[OJGH] seawater metagenome; Sea water
1171
1255
+
Tyr
GTA
[ENA]
¢þ
>WENV182577861
OJGL01000478
[OJGL] seawater metagenome; Sea water
1424
1340
-
Tyr
GTA
[ENA]
¢þ
>WENV182580085
OJGU01003323
[OJGU] seawater metagenome; Sea water
25
109
+
Tyr
GTA
[ENA]
¢þ
>WENV182581013
OJGW01051546
[OJGW] seawater metagenome; Sea water
509
425
-
Tyr
GTA
[ENA]
¢þ
>WENV182581362
OJGX01003732
[OJGX] seawater metagenome; Sea water
2770
2854
+
Tyr
GTA
[ENA]
¢þ
>WENV182581754
OJGY01002461
[OJGY] seawater metagenome; Sea water
144
228
+
Tyr
GTA
[ENA]
¢þ
>WENV182582761
OJHC01000017
[OJHC] seawater metagenome; Sea water
36274
36358
+
Tyr
GTA
[ENA]
¢þ
>WENV182587022
OJHK01035838
[OJHK] seawater metagenome; Sea water
509
425
-
Tyr
GTA
[ENA]
¢þ
>WENV182588234
OJHP01002875
[OJHP] seawater metagenome; Sea water
81
165
+
Tyr
GTA
[ENA]
¢þ
>WENV182588253
OJHQ01000418
[OJHQ] seawater metagenome; Sea water
145
229
+
Tyr
GTA
[ENA]
¢þ
>WENV182588534
OJHU01001492
[OJHU] seawater metagenome; Sea water
1413
1329
-
Tyr
GTA
[ENA]
¢þ
>WENV182588603
OJHV01001472
[OJHV] seawater metagenome; Sea water
144
228
+
Tyr
GTA
[ENA]
¢þ
>WENV182588694
OJHW01003552
[OJHW] seawater metagenome; Sea water
290
374
+
Tyr
GTA
[ENA]
¢þ
>WENV182589634
OJIE01002773
[OJIE] seawater metagenome; Sea water
127
211
+
Tyr
GTA
[ENA]
¢þ
>WENV182591585
OJIO01000644
[OJIO] seawater metagenome; Sea water
476
392
-
Tyr
GTA
[ENA]
¢þ
>WENV182592541
OJIR01003169
[OJIR] seawater metagenome; Sea water
509
425
-
Tyr
GTA
[ENA]
¢þ
>WENV183055211
OLGX01000176
[OLGX] seawater metagenome; Sea water
36168
36252
+
Tyr
GTA
[ENA]
¢þ
>WENV183055378
OLHB01000621
[OLHB] seawater metagenome; Sea water
1609
1693
+
Tyr
GTA
[ENA]
¢þ
>WENV183055385
OLHB01001348
[OLHB] seawater metagenome; Sea water
876
960
+
Tyr
GTA
[ENA]
¢þ
>WENV183055389
OLHB01001348
[OLHB] seawater metagenome; Sea water
509
425
-
Tyr
GTA
[ENA]
¢þ
>WENV183057410
OLHL01001611
[OLHL] seawater metagenome; Sea water
3858
3942
+
Tyr
GTA
[ENA]
¢þ
>WENV183057831
OLHM01008150
[OLHM] seawater metagenome; Sea water
145
61
-
Tyr
GTA
[ENA]
¢þ
>WENV183058153
OLHN01009412
[OLHN] seawater metagenome; Sea water
830
914
+
Tyr
GTA
[ENA]
¢þ
>WENV183059634
OLHV01000102
[OLHV] seawater metagenome; Sea water
26197
26281
+
Tyr
GTA
[ENA]
¢þ
>WENV183062422
OLID01010159
[OLID] seawater metagenome; Sea water
1030
1114
+
Tyr
GTA
[ENA]
¢þ
>WENV183522206
OMOM01000834
[OMOM] seawater metagenome; Sea water
10426
10510
+
Tyr
GTA
[ENA]
¢þ
>WENV183615886
OOEC01000758
[OOEC] marine metagenome; sea ice
3107
3191
+
Tyr
GTA
[ENA]
¢þ
>WENV183616800
OOEE01001473
[OOEE] marine metagenome; sea ice
2958
3042
+
Tyr
GTA
[ENA]
¢þ
>WENV183617466
OOEG01000515
[OOEG] marine metagenome; sea ice
3277
3361
+
Tyr
GTA
[ENA]
¢þ
>WENV183621256
OOFT01031841
[OOFT] marine metagenome; sea ice
352
268
-
Tyr
GTA
[ENA]
¢þ
>WENV183621435
OOFU01000806
[OOFU] marine metagenome; sea ice
533
449
-
Tyr
GTA
[ENA]
¢þ
>WENV183622660
OOFW01000885
[OOFW] marine metagenome; sea ice
3526
3610
+
Tyr
GTA
[ENA]
¢þ
>WENV183622919
OOFW01048746
[OOFW] marine metagenome; sea ice
42
126
+
Tyr
GTA
[ENA]
¢þ
>WENV183623361
OOFY01000412
[OOFY] marine metagenome; sea ice
500
416
-
Tyr
GTA
[ENA]
¢þ
>WENV183623526
OOGA01007016
[OOGA] marine metagenome; sea ice
694
610
-
Tyr
GTA
[ENA]
¢þ
>WENV183624333
OOGD01001318
[OOGD] marine metagenome; sea ice
3277
3361
+
Tyr
GTA
[ENA]
¢þ
>WENV183624667
OOGE01000343
[OOGE] marine metagenome; sea ice
1573
1489
-
Tyr
GTA
[ENA]
¢þ
>WENV183628255
OOGN01000835
[OOGN] marine metagenome; sea ice
551
635
+
Tyr
GTA
[ENA]
¢þ
>WENV183628540
OOGO01000755
[OOGO] marine metagenome; sea ice
3056
3140
+
Tyr
GTA
[ENA]
¢þ
>WENV170023870
BCQL01007281
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
1360
1444
+
Tyr
GTA
[ENA]
¢þ
>W09103770
AAKP01000022
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
23044
23128
+
Tyr
GTA
[ENA]
¡û
>C191217661
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
4151687
4151603
-
Tyr
GTA
-
¡û
>W1911641233
PYHU01000028
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
898
814
-
Tyr
GTA
[ENA]
¡û
>W1810157923
PJCF01000003
Gammaproteobacteria
Paraglaciecola sp. MB-3u-78 [PJCF]
8748
8832
+
Tyr
GTA
[ENA]
¡û
>C11100823
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
54396
54480
+
Tyr
GTA
[Ensembl]
¡û
>C11109438
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
326373
326457
+
Tyr
GTA
[Ensembl]
¡û
>W1511348329
JRKG01000012
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
21230
21314
+
Tyr
GTA
[ENA]
¡û
>C161051386
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
3949
4033
+
Tyr
GTA
[Ensembl]
¡û
>C161062238
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
4101696
4101612
-
Tyr
GTA
-
¡û
>C161071054
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
4025410
4025326
-
Tyr
GTA
-
¡û
>C161086234
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
1734447
1734531
+
Tyr
GTA
-
¡û
>C161086338
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
1709405
1709321
-
Tyr
GTA
-
¡û
>C131007666
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
4988003
4987919
-
Tyr
GTA
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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