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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181700 (119 seq.)
>W1711090550
LTAV01000002
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
231
315
+
Leu
TAG
[ENA]
¡û
>W1711090555
LTAV01000003
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
201497
201581
+
Leu
TAG
[ENA]
¡û
>W1711090584
LTAV01000019
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
299
215
-
Leu
TAG
[ENA]
¡û
>W1711090633
LTAW01000003
Gammaproteobacteria
Marinomonas atlantica [LTAW]
77702
77786
+
Leu
TAG
[ENA]
¡û
>W1711090634
LTAW01000003
Gammaproteobacteria
Marinomonas atlantica [LTAW]
77951
78035
+
Leu
TAG
[ENA]
¡û
>W1711090667
LTAW01000009
Gammaproteobacteria
Marinomonas atlantica [LTAW]
15231
15147
-
Leu
TAG
[ENA]
¡û
>W1711090703
LTAX01000001
Gammaproteobacteria
Marinomonas gallaica [LTAX]
379803
379719
-
Leu
TAG
[ENA]
¡û
>W1711090704
LTAX01000001
Gammaproteobacteria
Marinomonas gallaica [LTAX]
379555
379471
-
Leu
TAG
[ENA]
¡û
>W1711090739
LTAX01000018
Gammaproteobacteria
Marinomonas gallaica [LTAX]
59167
59251
+
Leu
TAG
[ENA]
¡û
>W1712081301
NHNK01000013
Gammaproteobacteria
Marinomonas agarivorans QM202 [NHNK]
68674
68590
-
Leu
TAG
[ENA]
¡û
>C013006
CP000749
Gammaproteobacteria
Marinomonas sp. MWYL1 [CP000749]
4897059
4896975
-
Leu
TAG
[Ensembl]
¡û
>C015856
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
3120190
3120274
+
Leu
TAG
[Ensembl]
¡û
>WENV180042165
LNFX01001456
[LNFX] marine sediment metagenome; antarctic beach sand mud
6344
6430
+
Leu
TAG
[ENA]
¢þ
>WENV181324335
OFLD01023660
[OFLD] marine metagenome; sea ice
75
159
+
Leu
TAG
[ENA]
¢þ
>W141191403
AYOZ01000011
Gammaproteobacteria
Marinomonas profundimaris D104 [AYOZ]
14765
14681
-
Leu
TAG
[ENA]
¡û
>W141223704
BAEK01000020
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
174888
174972
+
Leu
TAG
[ENA]
¡û
>W141223789
BAEM01000056
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
112059
112143
+
Leu
TAG
[ENA]
¡û
>W141223872
BAEO01000056
Gammaproteobacteria
Paraglaciecola arctica BSs20135 [BAEO]
105566
105482
-
Leu
TAG
[ENA]
¡û
>W141223881
BAEO01000064
Gammaproteobacteria
Paraglaciecola arctica BSs20135 [BAEO]
337
253
-
Leu
TAG
[ENA]
¡û
>W141223891
BAEP01000003
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
33701
33617
-
Leu
TAG
[ENA]
¡û
>W141224024
BAER01000115
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
103082
102998
-
Leu
TAG
[ENA]
¡û
>W141224057
BAES01000040
Gammaproteobacteria
Paraglaciecola psychrophila 170 [BAES]
22454
22538
+
Leu
TAG
[ENA]
¡û
>W141224064
BAES01000049
Gammaproteobacteria
Paraglaciecola psychrophila 170 [BAES]
16288
16372
+
Leu
TAG
[ENA]
¡û
>WENV182540193
OJAE01001801
[OJAE] seawater metagenome; Sea water
390
474
+
Leu
TAG
[ENA]
¢þ
>WENV182541194
OJAS01002514
[OJAS] seawater metagenome; Sea water
1126
1042
-
Leu
TAG
[ENA]
¢þ
>WENV182542687
OJAZ01000644
[OJAZ] seawater metagenome; Sea water
11223
11139
-
Leu
TAG
[ENA]
¢þ
>WENV182544197
OJBE01005267
[OJBE] seawater metagenome; Sea water
779
863
+
Leu
TAG
[ENA]
¢þ
>WENV182551698
OJCG01002860
[OJCG] seawater metagenome; Sea water
360
444
+
Leu
TAG
[ENA]
¢þ
>WENV182552412
OJCK01000038
[OJCK] seawater metagenome; Sea water
142
58
-
Leu
TAG
[ENA]
¢þ
>WENV182556004
OJDF01001057
[OJDF] seawater metagenome; Sea water
1861
1777
-
Leu
TAG
[ENA]
¢þ
>WENV182556771
OJDH01000061
[OJDH] seawater metagenome; Sea water
7215
7131
-
Leu
TAG
[ENA]
¢þ
>WENV182575567
OJFV01000085
[OJFV] seawater metagenome; Sea water
49101
49017
-
Leu
TAG
[ENA]
¢þ
>WENV182588568
OJHU01003835
[OJHU] seawater metagenome; Sea water
711
627
-
Leu
TAG
[ENA]
¢þ
>W141284669
JAMB01000001
Gammaproteobacteria
Marinomonas ushuaiensis DSM 15871 [JAMB]
14735
14651
-
Leu
TAG
[ENA]
¡û
>WENV183614646
OODW01009614
[OODW] marine metagenome; sea ice
168
252
+
Leu
TAG
[ENA]
¢þ
>WENV183614978
OOEA01022885
[OOEA] marine metagenome; sea ice
500
584
+
Leu
TAG
[ENA]
¢þ
>WENV183615870
OOEC01000122
[OOEC] marine metagenome; sea ice
508
592
+
Leu
TAG
[ENA]
¢þ
>WENV183616775
OOEE01000843
[OOEE] marine metagenome; sea ice
202
286
+
Leu
TAG
[ENA]
¢þ
>WENV183616788
OOEE01001070
[OOEE] marine metagenome; sea ice
85
1
-
Leu
TAG
[ENA]
¢þ
>WENV183617470
OOEG01000560
[OOEG] marine metagenome; sea ice
2237
2153
-
Leu
TAG
[ENA]
¢þ
>WENV183621389
OOFU01000103
[OOFU] marine metagenome; sea ice
11142
11058
-
Leu
TAG
[ENA]
¢þ
>WENV183622618
OOFW01000151
[OOFW] marine metagenome; sea ice
10184
10268
+
Leu
TAG
[ENA]
¢þ
>WENV183622635
OOFW01000513
[OOFW] marine metagenome; sea ice
3426
3510
+
Leu
TAG
[ENA]
¢þ
>WENV183623179
OOFX01025457
[OOFX] marine metagenome; sea ice
378
294
-
Leu
TAG
[ENA]
¢þ
>WENV183623581
OOGA01013112
[OOGA] marine metagenome; sea ice
767
683
-
Leu
TAG
[ENA]
¢þ
>WENV183624278
OOGD01000133
[OOGD] marine metagenome; sea ice
5167
5083
-
Leu
TAG
[ENA]
¢þ
>WENV183624420
OOGD01008423
[OOGD] marine metagenome; sea ice
907
991
+
Leu
TAG
[ENA]
¢þ
>WENV183624803
OOGE01011416
[OOGE] marine metagenome; sea ice
553
637
+
Leu
TAG
[ENA]
¢þ
>WENV183625724
OOGG01014065
[OOGG] marine metagenome; sea ice
634
550
-
Leu
TAG
[ENA]
¢þ
>WENV183628064
OOGM01008526
[OOGM] marine metagenome; sea ice
316
232
-
Leu
TAG
[ENA]
¢þ
>WENV183628300
OOGN01006727
[OOGN] marine metagenome; sea ice
647
563
-
Leu
TAG
[ENA]
¢þ
>WENV183628531
OOGO01000684
[OOGO] marine metagenome; sea ice
2225
2309
+
Leu
TAG
[ENA]
¢þ
>WENV183630757
OOGU01001606
[OOGU] marine metagenome; sea ice
2433
2349
-
Leu
TAG
[ENA]
¢þ
>WENV170213608
CEPX01040287
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
3199
3115
-
Leu
TAG
[ENA]
¢þ
>WENV170214387
CEPX01082838
[CEPX] marine metagenome genome assembly TARA_037_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
226
142
-
Leu
TAG
[ENA]
¢þ
>C191039805
CP025987
Gammaproteobacteria
Marinomonas sp. FW-1 [CP025987]
3783146
3783062
-
Leu
TAG
-
¡û
>W09106455
AAVH01000009
Gammaproteobacteria
Marinomonas sp. MWYL1 [AAVH]
183062
183146
+
Leu
TAG
[ENA]
¡û
>W1910584861
JYBL01000040
Gammaproteobacteria
Marinomonas sp. BSi20584 [JYBL]
14834
14750
-
Leu
TAG
[ENA]
¡û
>W1910914864
NHTT01000004
Gammaproteobacteria
Marinomonas sp. ef1 [NHTT]
311133
311217
+
Leu
TAG
[ENA]
¡û
>W1810157920
PJCF01000002
Gammaproteobacteria
Paraglaciecola sp. MB-3u-78 [PJCF]
408513
408429
-
Leu
TAG
[ENA]
¡û
>W1810157934
PJCF01000004
Gammaproteobacteria
Paraglaciecola sp. MB-3u-78 [PJCF]
203575
203491
-
Leu
TAG
[ENA]
¡û
>W1810606230
QGOK01000007
Gammaproteobacteria
Marinomonas shanghaiensis DSL-35 [QGOK]
219647
219731
+
Leu
TAG
[ENA]
¡û
>W1810625212
QHJF01000004
Gammaproteobacteria
Marinomonas arctica 328 [QHJF]
156543
156627
+
Leu
TAG
[ENA]
¡û
>W1810676282
QKLW01000010
Gammaproteobacteria
Marinomonas alcarazii CECT 7730 [QKLW]
15063
14979
-
Leu
TAG
[ENA]
¡û
>W1810679650
QKRA01000002
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
15394
15310
-
Leu
TAG
[ENA]
¡û
>W1810679673
QKRA01000010
Gammaproteobacteria
Marinomonas piezotolerans YLB-05 [QKRA]
66501
66417
-
Leu
TAG
[ENA]
¡û
>W1810720322
QNRF01000001
Gammaproteobacteria
Marinomonas aquiplantarum CECT 7732 [QNRF]
697234
697318
+
Leu
TAG
[ENA]
¡û
>W1810721665
QNSE01000002
Gammaproteobacteria
Marinomonas rhizomae CECT 7377 [QNSE]
356327
356411
+
Leu
TAG
[ENA]
¡û
>W1810759696
QPJQ01000008
Gammaproteobacteria
Marinomonas foliarum CECT 7731 [QPJQ]
117281
117365
+
Leu
TAG
[ENA]
¡û
>W1810885383
QUNG01000017
Gammaproteobacteria
Marinomonas pollencensis CECT 7375 [QUNG]
52699
52783
+
Leu
TAG
[ENA]
¡û
>C11109483
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
1987254
1987170
-
Leu
TAG
[Ensembl]
¡û
>C11114647
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
1472458
1472542
+
Leu
TAG
[Ensembl]
¡û
>C11114674
CP002583
Gammaproteobacteria
Marinomonas mediterranea MMB-1 [CP002583]
4432847
4432763
-
Leu
TAG
[Ensembl]
¡û
>C11115029
CP002771
Gammaproteobacteria
Marinomonas posidonica IVIA-Po-181 [CP002771]
3739503
3739419
-
Leu
TAG
[Ensembl]
¡û
>W1510741306
CYHG01000001
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
476026
475942
-
Leu
TAG
[ENA]
¡û
>W1510741307
CYHG01000001
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
475801
475717
-
Leu
TAG
[ENA]
¡û
>W1510741308
CYHG01000001
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
475564
475480
-
Leu
TAG
[ENA]
¡û
>W1510741354
CYHG01000015
Gammaproteobacteria
Marinomonas fungiae JCM 18476 [CYHG]
68014
68098
+
Leu
TAG
[ENA]
¡û
>W1511348371
JRKG01000050
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
146381
146297
-
Leu
TAG
[ENA]
¡û
>C131007655
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
3119770
3119854
+
Leu
TAG
-
¡û
>C131007687
CP003837
Gammaproteobacteria
Paraglaciecola psychrophila 170 [CP003837]
3660832
3660748
-
Leu
TAG
-
¡û
>W1610503671
FLOB01000001
Gammaproteobacteria
Marinomonas spartinae [FLOB]
12590
12506
-
Leu
TAG
[ENA]
¡û
>W1610503757
FLOC01000002
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
268679
268595
-
Leu
TAG
[ENA]
¡û
>W1610503758
FLOC01000002
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
268455
268371
-
Leu
TAG
[ENA]
¡û
>W1610503759
FLOC01000002
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
268217
268133
-
Leu
TAG
[ENA]
¡û
>W1610503849
FLOC01000028
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
11260
11176
-
Leu
TAG
[ENA]
¡û
>W1610504037
FLOE01000021
Gammaproteobacteria
Marinomonas spartinae CECT 8887 [FLOE]
7171
7255
+
Leu
TAG
[ENA]
¡û
>W1610506633
FLRA01000010
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
15369
15285
-
Leu
TAG
[ENA]
¡û
>W1610506634
FLRA01000011
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
196048
195964
-
Leu
TAG
[ENA]
¡û
>W1610506635
FLRA01000011
Gammaproteobacteria
Marinomonas gallaica CECT 5115 [FLRA]
195800
195716
-
Leu
TAG
[ENA]
¡û
>W1610506708
FLRB01000002
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
196048
195964
-
Leu
TAG
[ENA]
¡û
>W1610506709
FLRB01000002
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
195800
195716
-
Leu
TAG
[ENA]
¡û
>W1610506745
FLRB01000016
Gammaproteobacteria
Marinomonas gallaica CECT 5116 [FLRB]
114388
114472
+
Leu
TAG
[ENA]
¡û
>W1610540068
JSEE01000018
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
68115
68199
+
Leu
TAG
[ENA]
¡û
>W1610632871
LIQF01000001
Gammaproteobacteria
Marinomonas fungiae [LIQF]
476026
475942
-
Leu
TAG
[ENA]
¡û
>W1610632872
LIQF01000001
Gammaproteobacteria
Marinomonas fungiae [LIQF]
475801
475717
-
Leu
TAG
[ENA]
¡û
>W1610632873
LIQF01000001
Gammaproteobacteria
Marinomonas fungiae [LIQF]
475564
475480
-
Leu
TAG
[ENA]
¡û
>W1610632919
LIQF01000015
Gammaproteobacteria
Marinomonas fungiae [LIQF]
68014
68098
+
Leu
TAG
[ENA]
¡û
>W1610924790
LTAV01000002
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
231
315
+
Leu
TAG
[ENA]
¡û
>W1610924795
LTAV01000003
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
201497
201581
+
Leu
TAG
[ENA]
¡û
>W1610924824
LTAV01000019
Gammaproteobacteria
Marinomonas aquimarina [LTAV]
299
215
-
Leu
TAG
[ENA]
¡û
>W1610924873
LTAW01000003
Gammaproteobacteria
Marinomonas atlantica [LTAW]
77702
77786
+
Leu
TAG
[ENA]
¡û
>W1610924874
LTAW01000003
Gammaproteobacteria
Marinomonas atlantica [LTAW]
77951
78035
+
Leu
TAG
[ENA]
¡û
>W1610924907
LTAW01000009
Gammaproteobacteria
Marinomonas atlantica [LTAW]
15231
15147
-
Leu
TAG
[ENA]
¡û
>W1610924943
LTAX01000001
Gammaproteobacteria
Marinomonas gallaica [LTAX]
379803
379719
-
Leu
TAG
[ENA]
¡û
>W1610924944
LTAX01000001
Gammaproteobacteria
Marinomonas gallaica [LTAX]
379555
379471
-
Leu
TAG
[ENA]
¡û
>W1610924979
LTAX01000018
Gammaproteobacteria
Marinomonas gallaica [LTAX]
59167
59251
+
Leu
TAG
[ENA]
¡û
>W1710496500
FLOB01000001
Gammaproteobacteria
Marinomonas spartinae [FLOB]
12590
12506
-
Leu
TAG
[ENA]
¡û
>W1710496586
FLOC01000002
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
268679
268595
-
Leu
TAG
[ENA]
¡û
>W1710496587
FLOC01000002
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
268455
268371
-
Leu
TAG
[ENA]
¡û
>W1710496588
FLOC01000002
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
268217
268133
-
Leu
TAG
[ENA]
¡û
>W1710496678
FLOC01000028
Gammaproteobacteria
Marinomonas aquimarina [FLOC]
11260
11176
-
Leu
TAG
[ENA]
¡û
>W1710541367
FNYH01000001
Gammaproteobacteria
Allopseudospirillum japonicum [FNYH]
370343
370259
-
Leu
TAG
[ENA]
¡û
>W1710583957
FQVF01000007
Gammaproteobacteria
Marinomonas polaris DSM 16579 [FQVF]
248757
248841
+
Leu
TAG
[ENA]
¡û
>W1710643089
JSEE01000018
Gammaproteobacteria
Marinomonas sp. TW1 [JSEE]
68115
68199
+
Leu
TAG
[ENA]
¡û
>W1710767303
LIQF01000001
Gammaproteobacteria
Marinomonas fungiae [LIQF]
476026
475942
-
Leu
TAG
[ENA]
¡û
>W1710767304
LIQF01000001
Gammaproteobacteria
Marinomonas fungiae [LIQF]
475801
475717
-
Leu
TAG
[ENA]
¡û
>W1710767305
LIQF01000001
Gammaproteobacteria
Marinomonas fungiae [LIQF]
475564
475480
-
Leu
TAG
[ENA]
¡û
>W1710767351
LIQF01000015
Gammaproteobacteria
Marinomonas fungiae [LIQF]
68014
68098
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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