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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.18172 (9 seq.)
>WENV181795261
OGRS01054150
[OGRS] human gut metagenome; faeces
340
250
-
Ser
CGA
[ENA]
¢þ
>WENV181824576
OGUK01003954
[OGUK] human gut metagenome; faeces
423
513
+
Ser
CGA
[ENA]
¢þ
>WENV181895313
OGXR01006342
[OGXR] human gut metagenome; faeces
5048
4958
-
Ser
CGA
[ENA]
¢þ
>WENV181989043
OHAO01002520
[OHAO] human gut metagenome; faeces
5663
5753
+
Ser
CGA
[ENA]
¢þ
>WENV183040286
OLGB01096190
[OLGB] human gut metagenome; faeces
452
542
+
Ser
CGA
[ENA]
¢þ
>WENV183280648
OLSB01008399
[OLSB] human gut metagenome; faeces
3257
3347
+
Ser
CGA
[ENA]
¢þ
>WENV183393993
OLZF01033957
[OLZF] human gut metagenome; feces
659
749
+
Ser
CGA
[ENA]
¢þ
>W1610102972
CZAT01000006
Bacillota
Flavonifractor plautii [CZAT]
242155
242245
+
Ser
CGA
[ENA]
¡û
>W1710105727
CZAT01000006
Bacillota
Flavonifractor plautii [CZAT]
242155
242245
+
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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