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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.181948 (53 seq.)
>W131027616
AJAM01000004
Bacillota
Enterococcus casseliflavus ATCC 49996 [AJAM]
78847
78764
-
Leu
CAG
[ENA]
¡û
>W131201124
ASVX01000001
Bacillota
Enterococcus casseliflavus ATCC 49996 [ASVX]
932919
932836
-
Leu
CAG
[ENA]
¡û
>W131208695
ATIC01000036
Bacillota
Enterococcus casseliflavus 14-MB-W-14 [ATIC]
178972
178889
-
Leu
CAG
[ENA]
¡û
>W131208751
ATID01000057
Bacillota
Enterococcus faecium 13.SD.W.09 [ATID]
4967
5050
+
Leu
CAG
[ENA]
¡û
>W131209118
ATIM01000119
Bacillota
Enterococcus faecalis 06-MB-DW-09 [ATIM]
63940
64023
+
Leu
CAG
[ENA]
¡û
>W1711460414
MJEF01000015
Bacillota
Enterococcus casseliflavus [MJEF]
29127
29210
+
Leu
CAG
[ENA]
¡û
>W1711460446
MJEG01000001
Bacillota
Enterococcus casseliflavus [MJEG]
35214
35297
+
Leu
CAG
[ENA]
¡û
>W1711738469
MUBE01000008
Bacillota
Enterococcus casseliflavus [MUBE]
211365
211448
+
Leu
CAG
[ENA]
¡û
>W1712067637
NGLC01000001
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
2362157
2362240
+
Leu
CAG
[ENA]
¡û
>W1712067818
NGLF01000002
Bacillota
Enterococcus sp. 4E1_DIV0656 [NGLF]
845069
845152
+
Leu
CAG
[ENA]
¡û
>W1712067926
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
1003674
1003591
-
Leu
CAG
[ENA]
¡û
>W1712067983
NGLJ01000001
Bacillota
Enterococcus sp. 3C8_DIV0646 [NGLJ]
239422
239505
+
Leu
CAG
[ENA]
¡û
>W1712068050
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
874304
874387
+
Leu
CAG
[ENA]
¡û
>W1712068148
NGLL01000001
Bacillota
Enterococcus sp. 2G9_DIV0600 [NGLL]
971233
971150
-
Leu
CAG
[ENA]
¡û
>W1712068208
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
520574
520657
+
Leu
CAG
[ENA]
¡û
>W1712069285
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
1811587
1811670
+
Leu
CAG
[ENA]
¡û
>W1712097072
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
1243905
1243822
-
Leu
CAG
[ENA]
¡û
>W1712097184
NIBP01000004
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
227463
227546
+
Leu
CAG
[ENA]
¡û
>WENV180135333
OATK01022439
[OATK] human gut metagenome; faeces
490
573
+
Leu
CAG
[ENA]
¢þ
>WENV180153074
OAUR01000469
[OAUR] human gut metagenome; faeces
5711
5628
-
Leu
CAG
[ENA]
¢þ
>WENV180168027
OAVP01004216
[OAVP] human gut metagenome; faeces
2030
1947
-
Leu
CAG
[ENA]
¢þ
>WENV180449052
OBXF01001593
[OBXF] human gut metagenome; faeces
9674
9591
-
Leu
CAG
[ENA]
¢þ
>WENV180457772
OBXV01000039
[OBXV] human gut metagenome; faeces
100937
100854
-
Leu
CAG
[ENA]
¢þ
>WENV180503802
OCAN01000062
[OCAN] human gut metagenome; faeces
50348
50265
-
Leu
CAG
[ENA]
¢þ
>WENV182404127
OIEU01002851
[OIEU] human gut metagenome; human gut
620
703
+
Leu
CAG
[ENA]
¢þ
>WENV182538887
OIXV01000483
[OIXV] human gut metagenome; faeces
9661
9578
-
Leu
CAG
[ENA]
¢þ
>WENV182601604
OJJJ01000106
[OJJJ] metagenome; faeces
28653
28736
+
Leu
CAG
[ENA]
¢þ
>WENV182613611
OJKA01002768
[OJKA] metagenome; faeces
3602
3519
-
Leu
CAG
[ENA]
¢þ
>WENV182949834
OKVQ01000391
[OKVQ] human gut metagenome; human gut
126
209
+
Leu
CAG
[ENA]
¢þ
>WENV182954507
OKWA01002803
[OKWA] human gut metagenome; human gut
998
915
-
Leu
CAG
[ENA]
¢þ
>WENV170002166
AGFT01134279
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
1
84
+
Leu
CAG
[ENA]
¢þ
>C181083336
CP023515
Bacillota
Enterococcus sp. FDAARGOS_375 [CP023515]
420738
420821
+
Leu
CAG
-
¡û
>C181114772
CP025223
Bacillota
Enterococcus sp. CR-Ec1 [CP025223]
2671643
2671726
+
Leu
CAG
-
¡û
>C191094173
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
3303125
3303208
+
Leu
CAG
-
¡û
>W09115318
ACAH01000005
Bacillota
Enterococcus casseliflavus EC30 [ACAH]
4930
4847
-
Leu
CAG
[ENA]
¡û
>W09115492
ACAL01000003
Bacillota
Enterococcus casseliflavus EC10 [ACAL]
188338
188255
-
Leu
CAG
[ENA]
¡û
>W09115640
ACAO01000005
Bacillota
Enterococcus casseliflavus EC20 [ACAO]
25157
25074
-
Leu
CAG
[ENA]
¡û
>W1910181702
BJMG01000007
Bacillota
Enterococcus casseliflavus NBRC 12256 [BJMG]
179542
179459
-
Leu
CAG
[ENA]
¡û
>W1810793551
QRJU01000002
Bacillota
Enterococcus casseliflavus AM17-31 [QRJU]
34731
34648
-
Leu
CAG
[ENA]
¡û
>W1810798165
QRMZ01000014
Bacillota
Enterococcus casseliflavus AF48-16 [QRMZ]
37477
37560
+
Leu
CAG
[ENA]
¡û
>C151006876
CP004856
Bacillota
Enterococcus casseliflavus EC20 [CP004856]
955528
955445
-
Leu
CAG
[Ensembl]
¡û
>W1510079501
CDRE01000092
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
2963
2880
-
Leu
CAG
[ENA]
¡û
>W1510079548
CDRE01001611
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
338
255
-
Leu
CAG
[ENA]
¡û
>WENV11102238
AGFT01134279
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
1
84
+
Leu
CAG
[ENA]
¡û
>W11151169
AEWT01000011
Bacillota
Enterococcus casseliflavus ATCC 12755 [AEWT]
54972
54889
-
Leu
CAG
[ENA]
¡û
>C161066332
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
3695189
3695272
+
Leu
CAG
[Ensembl]
¡û
>W121077265
AKCC01000001
Bacillota
Enterococcus casseliflavus EC20 [AKCC]
3402714
3402631
-
Leu
CAG
[ENA]
¡û
>W121086938
AKKS01000005
Bacillota
Enterococcus sp. C1 [AKKS]
605394
605477
+
Leu
CAG
[ENA]
¡û
>W1610066453
BCPT01000003
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
70897
70814
-
Leu
CAG
[ENA]
¡û
>W1710063791
BCPT01000003
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
70897
70814
-
Leu
CAG
[ENA]
¡û
>W1710520597
FNFS01000001
Bacillota
Enterococcus casseliflavus [FNFS]
55321
55238
-
Leu
CAG
[ENA]
¡û
>W1710559380
FOMP01000001
Bacillota
Enterococcus casseliflavus [FOMP]
509648
509731
+
Leu
CAG
[ENA]
¡û
>W1710659236
JXKK01000003
Bacillota
Enterococcus casseliflavus [JXKK]
170139
170222
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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