This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182123 (77 seq.)
>W1710776026
LIZH01000459
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
29054
28970
-
Leu
GAG
[ENA]
¡û
>W1710860683
LMDB01000036
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
117566
117650
+
Leu
GAG
[ENA]
¡û
>W1710864559
LMFZ01000001
Betaproteobacteria
Duganella sp. Root1480D1 [LMFZ]
351473
351389
-
Leu
GAG
[ENA]
¡û
>W1710867254
LMIC01000051
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
10140
10224
+
Leu
GAG
[ENA]
¡û
>W1710871793
LMLM01000028
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
199876
199960
+
Leu
GAG
[ENA]
¡û
>W1710874793
LMNW01000035
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
23355
23271
-
Leu
GAG
[ENA]
¡û
>W1711033320
LRHV01000002
Betaproteobacteria
Duganella sp. HH105 [LRHV]
22253
22169
-
Leu
GAG
[ENA]
¡û
>W1711033540
LRHY01000114
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
73815
73899
+
Leu
GAG
[ENA]
¡û
>W1711033556
LRHZ01000001
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
377028
377112
+
Leu
GAG
[ENA]
¡û
>W1711033676
LRIA01000116
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
191606
191522
-
Leu
GAG
[ENA]
¡û
>W1711033748
LRIC01000008
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
188270
188186
-
Leu
GAG
[ENA]
¡û
>W1711033800
LRID01000036
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
62741
62825
+
Leu
GAG
[ENA]
¡û
>W1711046625
LROM01000106
Betaproteobacteria
Duganella phyllosphaerae [LROM]
89136
89052
-
Leu
GAG
[ENA]
¡û
>W1711046665
LRON01000004
Betaproteobacteria
Duganella sp. HH101 [LRON]
325739
325823
+
Leu
GAG
[ENA]
¡û
>W1711308614
MAQB02000006
Betaproteobacteria
Janthinobacterium lividum [MAQB]
411451
411367
-
Leu
GAG
[ENA]
¡û
>W1712004475
NEGX01000039
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
4508
4592
+
Leu
GAG
[ENA]
¡û
>W1712004557
NEGY01000050
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
22481
22565
+
Leu
GAG
[ENA]
¡û
>W1712004711
NEHA01000068
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
4503
4587
+
Leu
GAG
[ENA]
¡û
>W1712004743
NEHB01000001
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
519604
519688
+
Leu
GAG
[ENA]
¡û
>C171010466
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
1605328
1605412
+
Leu
GAG
-
¡û
>W131050139
AMWD01000002
Betaproteobacteria
Janthinobacterium sp. HH01 [AMWD]
2185491
2185407
-
Leu
GAG
[ENA]
¡û
>W131176201
ARJV01000027
Betaproteobacteria
Duganella zoogloeoides ATCC 25935 [ARJV]
820555
820471
-
Leu
GAG
[ENA]
¡û
>W131179068
ARMC01000006
Betaproteobacteria
Oxalobacteraceae bacterium AB_14 [ARMC]
144861
144945
+
Leu
GAG
[ENA]
¡û
>W131225146
AUDI01000008
Betaproteobacteria
Pseudoduganella violaceinigra DSM 15887 [AUDI]
180612
180528
-
Leu
GAG
[ENA]
¡û
>WENV180018487
FSZM01000053
[FSZM] metagenome; soil
1915
1831
-
Leu
GAG
[ENA]
¢þ
>WENV180024852
FTIJ01182423
[FTIJ] metagenome; soil
22
106
+
Leu
GAG
[ENA]
¢þ
>WENV180027095
FTIW01000436
[FTIW] metagenome; soil
485
401
-
Leu
GAG
[ENA]
¢þ
>WENV181384825
OFRI01012999
[OFRI] wastewater metagenome; Exp Tend VB 90WW
796
712
-
Leu
GAG
[ENA]
¢þ
>W141170732
AXYV01000003
Betaproteobacteria
beta proteobacterium JGI 0001013-N12 [AXYV]
13758
13674
-
Leu
GAG
[ENA]
¡û
>C181081145
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
4715137
4715053
-
Leu
GAG
-
¡û
>C181163958
CP028324
Betaproteobacteria
Pseudoduganella armeniaca ZMN-3 [CP028324]
4712143
4712059
-
Leu
GAG
-
¡û
>C181187711
CP030092
Betaproteobacteria
Massilia sp. YMA4 [CP030092]
345812
345896
+
Leu
GAG
-
¡û
>C191098157
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
4041105
4041021
-
Leu
GAG
-
¡û
>C191150765
CP036401
Betaproteobacteria
Pseudoduganella albidiflava DSM 17472 [CP036401]
1552204
1552288
+
Leu
GAG
-
¡û
>C191174010
CP040017
Betaproteobacteria
Pseudoduganella umbonata DSMZ 26121 [CP040017]
2976780
2976696
-
Leu
GAG
-
¡û
>C191188194
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
2406727
2406643
-
Leu
GAG
-
¡û
>W141821564
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
2296741
2296657
-
Leu
GAG
[ENA]
¡û
>W1910942555
NJGY01000001
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
478677
478593
-
Leu
GAG
[ENA]
¡û
>W1810068403
PDZL01000006
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
122630
122714
+
Leu
GAG
[ENA]
¡û
>W1810068461
PDZM01000001
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
177085
177169
+
Leu
GAG
[ENA]
¡û
>W1810068584
PDZN01000019
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
109936
109852
-
Leu
GAG
[ENA]
¡û
>W1810068712
PDZP01000007
Betaproteobacteria
Janthinobacterium sp. BJB412 [PDZP]
97488
97572
+
Leu
GAG
[ENA]
¡û
>W1810069761
PEBS01000026
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
66282
66198
-
Leu
GAG
[ENA]
¡û
>W1810072784
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
4509622
4509706
+
Leu
GAG
[ENA]
¡û
>W1810121323
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
1911431
1911347
-
Leu
GAG
[ENA]
¡û
>W1810576803
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
4616498
4616414
-
Leu
GAG
[ENA]
¡û
>W1810672495
QJTL01000006
Betaproteobacteria
Duganella sp. GV083 [QJTL]
265445
265361
-
Leu
GAG
[ENA]
¡û
>W1810677203
QKMN01000006
Betaproteobacteria
Duganella sp. GV053 [QKMN]
265445
265361
-
Leu
GAG
[ENA]
¡û
>W1810693439
QLLJ01000006
Betaproteobacteria
Duganella sp. GV066 [QLLJ]
265445
265361
-
Leu
GAG
[ENA]
¡û
>W1810694399
QLLZ01000006
Betaproteobacteria
Duganella sp. GV039 [QLLZ]
299612
299696
+
Leu
GAG
[ENA]
¡û
>W1810788002
QREC01000006
Betaproteobacteria
Duganella sp. GV023 [QREC]
265445
265361
-
Leu
GAG
[ENA]
¡û
>W1810885094
QUNB01000006
Betaproteobacteria
Duganella sp. GV032 [QUNB]
299612
299696
+
Leu
GAG
[ENA]
¡û
>W1810885216
QUND01000006
Betaproteobacteria
Duganella sp. GV046 [QUND]
265445
265361
-
Leu
GAG
[ENA]
¡û
>W1810885850
QUNP01000006
Betaproteobacteria
Duganella sp. GV038 [QUNP]
265445
265361
-
Leu
GAG
[ENA]
¡û
>W1810886099
QUNU01000006
Betaproteobacteria
Duganella sp. GV067 [QUNU]
299691
299775
+
Leu
GAG
[ENA]
¡û
>W1810908109
QVIL01000005
Betaproteobacteria
Duganella sp. BJB489 [QVIL]
384493
384409
-
Leu
GAG
[ENA]
¡û
>W1810908174
QVIM01000006
Betaproteobacteria
Duganella sp. BJB488 [QVIM]
197378
197462
+
Leu
GAG
[ENA]
¡û
>W1810908252
QVIN01000006
Betaproteobacteria
Duganella sp. BJB480 [QVIN]
197378
197462
+
Leu
GAG
[ENA]
¡û
>W1810908285
QVIO01000001
Betaproteobacteria
Duganella sp. BJB476 [QVIO]
273176
273260
+
Leu
GAG
[ENA]
¡û
>W1810908353
QVIP01000001
Betaproteobacteria
Duganella sp. BJB475 [QVIP]
273176
273260
+
Leu
GAG
[ENA]
¡û
>C151092582
CP012201
Betaproteobacteria
Massilia sp. NR 4-1 [CP012201]
133664
133748
+
Leu
GAG
-
¡û
>W121031840
AHHB01000037
Betaproteobacteria
Janthinobacterium lividum PAMC 25724 [AHHB]
208240
208156
-
Leu
GAG
[ENA]
¡û
>W1610640132
LIZH01000459
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
29054
28970
-
Leu
GAG
[ENA]
¡û
>W1610723029
LMDB01000036
Betaproteobacteria
Duganella sp. Root336D2 [LMDB]
117566
117650
+
Leu
GAG
[ENA]
¡û
>W1610726905
LMFZ01000001
Betaproteobacteria
Duganella sp. Root1480D1 [LMFZ]
351473
351389
-
Leu
GAG
[ENA]
¡û
>W1610729600
LMIC01000051
Betaproteobacteria
Duganella sp. Root198D2 [LMIC]
10140
10224
+
Leu
GAG
[ENA]
¡û
>W1610734139
LMLM01000028
Betaproteobacteria
Duganella sp. Leaf61 [LMLM]
199876
199960
+
Leu
GAG
[ENA]
¡û
>W1610737139
LMNW01000035
Betaproteobacteria
Duganella sp. Leaf126 [LMNW]
23355
23271
-
Leu
GAG
[ENA]
¡û
>W1611056302
MAQB01000069
Betaproteobacteria
Janthinobacterium lividum [MAQB]
51885
51801
-
Leu
GAG
[ENA]
¡û
>W1710515830
FNCD01000001
Betaproteobacteria
Duganella sp. OV458 [FNCD]
384874
384958
+
Leu
GAG
[ENA]
¡û
>W1710519266
FNEQ01000001
Betaproteobacteria
Duganella sp. OV510 [FNEQ]
1137932
1137848
-
Leu
GAG
[ENA]
¡û
>W1710545142
FOBG01000001
Betaproteobacteria
Duganella sp. CF402 [FOBG]
2311195
2311111
-
Leu
GAG
[ENA]
¡û
>W1710561551
FOOF01000027
Betaproteobacteria
Duganella sp. CF458 [FOOF]
22105
22189
+
Leu
GAG
[ENA]
¡û
>W1710568822
FOTW01000020
Betaproteobacteria
Rugamonas rubra [FOTW]
137754
137838
+
Leu
GAG
[ENA]
¡û
>W1710578397
FPBO01000012
Betaproteobacteria
Pseudoduganella namucuonensis [FPBO]
111983
111899
-
Leu
GAG
[ENA]
¡û
>W1710592991
FRCX01000001
Betaproteobacteria
Duganella sacchari [FRCX]
192755
192671
-
Leu
GAG
[ENA]
¡û
>W1710720622
LFKP01000005
Betaproteobacteria
Janthinobacterium lividum [LFKP]
317286
317370
+
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK