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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182128 (18 seq.)
>W131050784
AMXB01000045
Betaproteobacteria
Thauera sp. 27 [AMXB]
5754
5838
+
Leu
CAA
[ENA]
¡û
>W131170343
ARFL01000003
Betaproteobacteria
Methyloversatilis discipulorum RZ94 [ARFL]
315748
315664
-
Leu
CAA
[ENA]
¡û
>W131176301
ARJX01000048
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
413279
413363
+
Leu
CAA
[ENA]
¡û
>C001281
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
973414
973498
+
Leu
CAA
[Ensembl]
¡û
>W141216099
AZUP01000001
Betaproteobacteria
Methyloversatilis discipulorum FAM1 [AZUP]
1939838
1939754
-
Leu
CAA
[ENA]
¡û
>WENV170561016
CZCA01001998
[CZCA] anaerobic digester metagenome; anaerobic digester
14292
14208
-
Leu
CAA
[ENA]
¢þ
>WENV170650682
JRYE01009771
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
169
253
+
Leu
CAA
[ENA]
¢þ
>WENV170652661
JRYH01012035
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1984
1900
-
Leu
CAA
[ENA]
¢þ
>C181187379
CP030061
Betaproteobacteria
Zoogloea oryzae NBRC 102407 [CP030061]
527237
527321
+
Leu
CAA
-
¡û
>C191019176
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
3916725
3916641
-
Leu
CAA
-
¡û
>C191022873
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
1150796
1150880
+
Leu
CAA
-
¡û
>W1910183550
BJNV01000012
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
91425
91341
-
Leu
CAA
[ENA]
¡û
>W1810679137
QKOE01000001
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
400305
400221
-
Leu
CAA
[ENA]
¡û
>C151076190
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
4210138
4210054
-
Leu
CAA
-
¡û
>C161095068
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
1013070
1013154
+
Leu
CAA
-
¡û
>W1610071690
BCUG01000016
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
59976
60060
+
Leu
CAA
[ENA]
¡û
>W1710068892
BCUG01000016
Betaproteobacteria
Thauera butanivorans NBRC 103042 [BCUG]
59976
60060
+
Leu
CAA
[ENA]
¡û
>W1710595736
FTMD01000006
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
124084
124168
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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