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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182212 (127 seq.)
>W1710818418
LKPF01000088
Bacillota
Enterococcus durans faecium [LKPF]
16572
16491
-
Leu
CAG
[ENA]
¡û
>W1710931969
LOHT01000341
Bacillota
Enterococcus faecium [LOHT]
21041
20960
-
Leu
CAG
[ENA]
¡û
>W1711103344
LTOQ01000095
Bacillota
Enterococcus sp. HMSC072F02 [LTOQ]
1525
1606
+
Leu
CAG
[ENA]
¡û
>W1711113198
LTYC01000008
Bacillota
Enterococcus sp. HMSC067C01 [LTYC]
1524
1605
+
Leu
CAG
[ENA]
¡û
>W1711460314
MJED01000005
Bacillota
Enterococcus gallinarum [MJED]
191082
191163
+
Leu
CAG
[ENA]
¡û
>W1711683249
MRYG01000039
Bacillota
Enterococcus faecium [MRYG]
11918
11837
-
Leu
CAG
[ENA]
¡û
>W1711957847
NBVQ01000325
Bacillota
Enterococcus faecium [NBVQ]
1426
1507
+
Leu
CAG
[ENA]
¡û
>W1712068974
NGMA01000005
Bacillota
Enterococcus faecium [NGMA]
127634
127553
-
Leu
CAG
[ENA]
¡û
>W1712069172
NGMD01000003
Bacillota
Enterococcus faecium [NGMD]
142477
142396
-
Leu
CAG
[ENA]
¡û
>W1712069809
NGMQ01000001
Bacillota
Enterococcus gallinarum [NGMQ]
874878
874797
-
Leu
CAG
[ENA]
¡û
>W131008128
AHWS01000044
Bacillota
Enterococcus faecium E1185 [AHWS]
3925
4006
+
Leu
CAG
[ENA]
¡û
>W131008179
AHWT01000015
Bacillota
Enterococcus faecium E1258 [AHWT]
116365
116446
+
Leu
CAG
[ENA]
¡û
>W131008749
AHXD01000032
Bacillota
Enterococcus faecium E1604 [AHXD]
22043
22124
+
Leu
CAG
[ENA]
¡û
>W131008955
AHXH01000018
Bacillota
Enterococcus faecium E1623 [AHXH]
20880
20799
-
Leu
CAG
[ENA]
¡û
>W131009345
AHXQ01000065
Bacillota
Enterococcus faecium E1904 [AHXQ]
12705
12786
+
Leu
CAG
[ENA]
¡û
>W131018485
AITY01000052
Bacillota
Enterococcus faecium HM1072 [AITY]
8849
8768
-
Leu
CAG
[ENA]
¡û
>W131018486
AITZ01000001
Bacillota
Enterococcus faecium HM1073 [AITZ]
289932
289851
-
Leu
CAG
[ENA]
¡û
>W131018591
AIUA01000051
Bacillota
Enterococcus faecium HM1074 [AIUA]
27702
27783
+
Leu
CAG
[ENA]
¡û
>W131018723
AIUF01000020
Bacillota
Enterococcus faecium UAA714 [AIUF]
4041
4122
+
Leu
CAG
[ENA]
¡û
>W131018788
AIUG01000035
Bacillota
Enterococcus faecium UAA715 [AIUG]
24583
24664
+
Leu
CAG
[ENA]
¡û
>W131018845
AIUI01000017
Bacillota
Enterococcus faecium UAA718 [AIUI]
65131
65050
-
Leu
CAG
[ENA]
¡û
>W131019389
AIUS01000024
Bacillota
Enterococcus faecium UAA910 [AIUS]
25786
25867
+
Leu
CAG
[ENA]
¡û
>W131031463
AJDG01000025
Bacillota
Enterococcus faecium UAA407 [AJDG]
30463
30382
-
Leu
CAG
[ENA]
¡û
>W131031643
AJDJ01000038
Bacillota
Enterococcus faecium UAA431 [AJDJ]
9304
9385
+
Leu
CAG
[ENA]
¡û
>W131053759
ANAI01000046
Bacillota
Enterococcus faecium LCT-EF20 [ANAI]
12174
12093
-
Leu
CAG
[ENA]
¡û
>W131053799
ANAJ01000072
Bacillota
Enterococcus faecium LCT-EF258 [ANAJ]
1521
1602
+
Leu
CAG
[ENA]
¡û
>W131188291
ASAM01000054
Bacillota
Enterococcus faecium UC7267 [ASAM]
5964
6045
+
Leu
CAG
[ENA]
¡û
>WENV180129581
OATD01000093
[OATD] human gut metagenome; faeces
14469
14388
-
Leu
CAG
[ENA]
¢þ
>WENV180143841
OATY01000717
[OATY] human gut metagenome; faeces
144
225
+
Leu
CAG
[ENA]
¢þ
>WENV180144036
OATZ01000084
[OATZ] human gut metagenome; faeces
14422
14341
-
Leu
CAG
[ENA]
¢þ
>WENV180278196
OBHX01002606
[OBHX] metagenome; feces
12238
12157
-
Leu
CAG
[ENA]
¢þ
>WENV180305527
OBJO01000390
[OBJO] human gut metagenome; human gut
1600
1519
-
Leu
CAG
[ENA]
¢þ
>WENV180334148
OBLF01005677
[OBLF] metagenome; feces
1591
1672
+
Leu
CAG
[ENA]
¢þ
>WENV180348126
OBLO01003199
[OBLO] metagenome; feces
10376
10295
-
Leu
CAG
[ENA]
¢þ
>WENV180427393
OBWA01002100
[OBWA] human gut metagenome; faeces
218
299
+
Leu
CAG
[ENA]
¢þ
>WENV180453464
OBXM01000135
[OBXM] human gut metagenome; faeces
5123
5042
-
Leu
CAG
[ENA]
¢þ
>W141072098
ASKG01000088
Bacillota
Enterococcus sp. HSIEG1 [ASKG]
41471
41552
+
Leu
CAG
[ENA]
¡û
>WENV181436430
OGDF01017790
[OGDF] human gut metagenome; human gut
1767
1848
+
Leu
CAG
[ENA]
¢þ
>W141147198
AWWN01000020
Bacillota
Enterococcus faecium UC8668 [AWWN]
279
198
-
Leu
CAG
[ENA]
¡û
>W141158862
AXOL01000007
Bacillota
Enterococcus faecium 10/96A [AXOL]
52295
52214
-
Leu
CAG
[ENA]
¡û
>WENV182610903
OJJW01002174
[OJJW] metagenome; faeces
1168
1087
-
Leu
CAG
[ENA]
¢þ
>WENV182820659
OKAO01001067
[OKAO] human gut metagenome; human gut
1120
1039
-
Leu
CAG
[ENA]
¢þ
>WENV182828385
OKDF01006532
[OKDF] human gut metagenome; human gut
195
276
+
Leu
CAG
[ENA]
¢þ
>WENV182839039
OKGZ01000220
[OKGZ] human gut metagenome; human gut
2775
2694
-
Leu
CAG
[ENA]
¢þ
>WENV182839703
OKHF01000378
[OKHF] human gut metagenome; human gut
1643
1724
+
Leu
CAG
[ENA]
¢þ
>WENV182938176
OKVD01000623
[OKVD] human gut metagenome; human gut
8612
8531
-
Leu
CAG
[ENA]
¢þ
>WENV182951786
OKVV01000106
[OKVV] human gut metagenome; human gut
19295
19376
+
Leu
CAG
[ENA]
¢þ
>WENV183238563
OLQZ01000300
[OLQZ] human gut metagenome; faeces
14625
14544
-
Leu
CAG
[ENA]
¢þ
>WENV183256992
OLRL01003112
[OLRL] human gut metagenome; faeces
1118
1199
+
Leu
CAG
[ENA]
¢þ
>WENV183286559
OLSE01020121
[OLSE] human gut metagenome; faeces
431
350
-
Leu
CAG
[ENA]
¢þ
>WENV183293951
OLSK01003219
[OLSK] human gut metagenome; faeces
3637
3718
+
Leu
CAG
[ENA]
¢þ
>WENV183511835
OMJG01005750
[OMJG] food metagenome; Cotija cheese
1846
1765
-
Leu
CAG
[ENA]
¢þ
>WENV170539859
CWGP01000030
[CWGP] human gut metagenome; ENVO:feces
299088
299007
-
Leu
CAG
[ENA]
¢þ
>WENV170541589
CXPQ01001656
[CXPQ] human gut metagenome genome assembly hB10, contig; ENVO:feces
208
289
+
Leu
CAG
[ENA]
¢þ
>WENV170542205
CXPZ01000318
[CXPZ] human gut metagenome genome assembly hB5, contig hB5_contig003914.; ENVO:feces
77
158
+
Leu
CAG
[ENA]
¢þ
>WENV170542752
CXQH01001798
[CXQH] human gut metagenome genome assembly hC3, contig hC3_contig001864.; ENVO:feces
143
224
+
Leu
CAG
[ENA]
¢þ
>WENV170544499
CXRK01001748
[CXRK] human gut metagenome genome assembly hE7, contig hE7_contig003222.; ENVO:feces
1960
1879
-
Leu
CAG
[ENA]
¢þ
>WENV170545219
CXRX01000230
[CXRX] human gut metagenome genome assembly hG12, contig; ENVO:feces
9530
9611
+
Leu
CAG
[ENA]
¢þ
>WENV170548184
CXUB01000518
[CXUB] Human gut metagenome genome assembly, contig: mD7_contig001514.; ENVO:feces
1658
1577
-
Leu
CAG
[ENA]
¢þ
>WENV170548533
CXUH01001294
[CXUH] Human gut metagenome genome assembly, contig: mC1_contig002327.; ENVO:feces
1024
1105
+
Leu
CAG
[ENA]
¢þ
>C191062478
CP028928
Bacillota
Lactobacillus sp. Koumiss [CP028928]
2500257
2500338
+
Leu
CAG
-
¡û
>C191110754
CP033740
Bacillota
Enterococcus sp. FDAARGOS_553 [CP033740]
149332
149413
+
Leu
CAG
-
¡û
>C191177765
CP040461
Bacillota
Enterococcus sp. M190262 [CP040461]
65800
65881
+
Leu
CAG
-
¡û
>W09115401
ACAJ01000005
Bacillota
Enterococcus gallinarum EG2 [ACAJ]
300731
300650
-
Leu
CAG
[ENA]
¡û
>W09124128
ACHL01000009
Bacillota
Enterococcus faecium TX1330 [ACHL]
1497
1578
+
Leu
CAG
[ENA]
¡û
>W141734589
JNLR01000003
Bacillota
Enterococcus gallinarum [JNLR]
755673
755592
-
Leu
CAG
[ENA]
¡û
>W1910280329
FQST01000048
Bacillota
Enterococcus faecium [FQST]
6335
6416
+
Leu
CAG
[ENA]
¡û
>W1910283476
FREA01000038
Bacillota
Enterococcus faecium [FREA]
21184
21103
-
Leu
CAG
[ENA]
¡û
>W1910283747
FREE01000034
Bacillota
Enterococcus faecium [FREE]
10633
10552
-
Leu
CAG
[ENA]
¡û
>W1910283888
FREF01000070
Bacillota
Enterococcus faecium [FREF]
1221
1140
-
Leu
CAG
[ENA]
¡û
>W1910283908
FREG01000021
Bacillota
Enterococcus faecium [FREG]
34119
34038
-
Leu
CAG
[ENA]
¡û
>W1910284364
FREN01000048
Bacillota
Enterococcus faecium [FREN]
6335
6416
+
Leu
CAG
[ENA]
¡û
>W1910284673
FRER01000049
Bacillota
Enterococcus faecium [FRER]
3044
3125
+
Leu
CAG
[ENA]
¡û
>W1910312214
FRXT01000038
Bacillota
Enterococcus faecium [FRXT]
21184
21103
-
Leu
CAG
[ENA]
¡û
>W1910312504
FRXW01000070
Bacillota
Enterococcus faecium [FRXW]
1221
1140
-
Leu
CAG
[ENA]
¡û
>W1910312555
FRXX01000034
Bacillota
Enterococcus faecium [FRXX]
10633
10552
-
Leu
CAG
[ENA]
¡û
>W1910312901
FRYD01000021
Bacillota
Enterococcus faecium [FRYD]
34119
34038
-
Leu
CAG
[ENA]
¡û
>W1910313043
FRYF01000048
Bacillota
Enterococcus faecium [FRYF]
6335
6416
+
Leu
CAG
[ENA]
¡û
>W1910313352
FRYJ01000049
Bacillota
Enterococcus faecium [FRYJ]
3044
3125
+
Leu
CAG
[ENA]
¡û
>W1910475176
FXGG01000048
Bacillota
Enterococcus faecium VREN3283 [FXGG]
13692
13773
+
Leu
CAG
[ENA]
¡û
>W1910475383
FXGJ01000052
Bacillota
Enterococcus faecium VREN3285 [FXGJ]
13194
13275
+
Leu
CAG
[ENA]
¡û
>W1910475422
FXGK01000049
Bacillota
Enterococcus faecium VREN3284 [FXGK]
1817
1736
-
Leu
CAG
[ENA]
¡û
>W1910475576
FXGM01000050
Bacillota
Enterococcus faecium VREN3280 [FXGM]
3341
3260
-
Leu
CAG
[ENA]
¡û
>W1910476499
FXHB01000052
Bacillota
Enterococcus faecium VREN3287 [FXHB]
1813
1732
-
Leu
CAG
[ENA]
¡û
>W1910479348
FXIW01000035
Bacillota
Enterococcus faecium VREN3281 [FXIW]
14049
13968
-
Leu
CAG
[ENA]
¡û
>W1910479765
FXJD01000026
Bacillota
Enterococcus faecium VREN1871 [FXJD]
25738
25819
+
Leu
CAG
[ENA]
¡û
>W1910481713
FXKI01000048
Bacillota
Enterococcus faecium VREN3292 [FXKI]
1817
1736
-
Leu
CAG
[ENA]
¡û
>W1910482020
FXKN01000053
Bacillota
Enterococcus faecium VREN3282 [FXKN]
1815
1734
-
Leu
CAG
[ENA]
¡û
>W1910482121
FXKP01000051
Bacillota
Enterococcus faecium VREN3288 [FXKP]
1815
1734
-
Leu
CAG
[ENA]
¡û
>W1910482192
FXKQ01000040
Bacillota
Enterococcus faecium VREN1870 [FXKQ]
12613
12694
+
Leu
CAG
[ENA]
¡û
>W1910482934
FXLC01000053
Bacillota
Enterococcus faecium VREN3289 [FXLC]
13311
13392
+
Leu
CAG
[ENA]
¡û
>W1910483459
FXLR01000053
Bacillota
Enterococcus faecium VREN3286 [FXLR]
13674
13755
+
Leu
CAG
[ENA]
¡û
>W1910609890
LERZ01000006
Bacillota
Enterococcus gallinarum 298EA1 [LERZ]
426984
426903
-
Leu
CAG
[ENA]
¡û
>W1910870815
NCVP01000046
Bacillota
Enterococcus durans 18S [NCVP]
41479
41398
-
Leu
CAG
[ENA]
¡û
>W1911085596
NNSQ01000065
Bacillota
Enterococcus faecium ICIS 96 [NNSQ]
1720
1639
-
Leu
CAG
[ENA]
¡û
>W1911238642
NSCY01000001
Bacillota
Enterococcus gallinarum 9402 [NSCY]
467698
467779
+
Leu
CAG
[ENA]
¡û
>W1911436630
NXOZ01000053
Bacillota
Enterococcus faecium 2_Efcm_HA-NL [NXOZ]
5126
5207
+
Leu
CAG
[ENA]
¡û
>W1911436689
NXPA01000008
Bacillota
Enterococcus faecium 3_Efcm_HA-NL [NXPA]
14465
14384
-
Leu
CAG
[ENA]
¡û
>W1911436805
NXPC01000019
Bacillota
Enterococcus faecium 5_Efcm_HA-NL [NXPC]
5119
5200
+
Leu
CAG
[ENA]
¡û
>W1911436869
NXPD01000027
Bacillota
Enterococcus faecium 6_Efcm_HA-NL [NXPD]
5126
5207
+
Leu
CAG
[ENA]
¡û
>W1911573375
PDEB01000004
Bacillota
Enterococcus durans FDAARGOS_396 [PDEB]
3028590
3028509
-
Leu
CAG
[ENA]
¡û
>W1911581592
PGCU01000131
Bacillota
Enterococcus faecium A206R2B0 [PGCU]
1648
1729
+
Leu
CAG
[ENA]
¡û
>W1911582599
PHKZ01000002
Bacillota
Enterococcus faecium 13-014 [PHKZ]
1441812
1441893
+
Leu
CAG
[ENA]
¡û
>W1911615330
PPCK01000107
Bacillota
Enterococcus faecium SAU16 [PPCK]
12525
12606
+
Leu
CAG
[ENA]
¡û
>W1911710271
QPQX01000001
Bacillota
Enterococcus sp. ARL09-542 [QPQX]
291484
291403
-
Leu
CAG
[ENA]
¡û
>W1911788129
QYBD01000003
Bacillota
Enterococcus faecium TX1330 [QYBD]
56263
56344
+
Leu
CAG
[ENA]
¡û
>W1810047405
PCFW01000034
Bacillota
Enterococcus faecium Hp_23-14 [PCFW]
6375
6456
+
Leu
CAG
[ENA]
¡û
>W1810047437
PCFX01000021
Bacillota
Enterococcus faecium Hp_23-9 [PCFX]
6396
6477
+
Leu
CAG
[ENA]
¡û
>W1810047773
PCGC01000048
Bacillota
Enterococcus faecium Hp_5-7 [PCGC]
6335
6416
+
Leu
CAG
[ENA]
¡û
>W1810060553
PDMB01000062
Bacillota
Enterococcus faecium 19 [PDMB]
14572
14491
-
Leu
CAG
[ENA]
¡û
>W1810113885
PHLB01000001
Bacillota
Enterococcus faecium 15-162 [PHLB]
1079274
1079193
-
Leu
CAG
[ENA]
¡û
>W1810237782
PPHK01000011
Bacillota
Enterococcus gallinarum EG1 [PPHK]
65759
65840
+
Leu
CAG
[ENA]
¡û
>W1810705885
QMJQ01000081
Bacillota
Enterococcus faecium KMB_617 [QMJQ]
3276
3357
+
Leu
CAG
[ENA]
¡û
>W1810907670
QVHY01000001
Bacillota
Enterococcus gallinarum OF05-6AC [QVHY]
468372
468453
+
Leu
CAG
[ENA]
¡û
>C151094327
CP012366
Bacillota
Enterococcus durans KLDS6.0933 [CP012366]
1763934
1763853
-
Leu
CAG
-
¡û
>C151094652
CP012384
Bacillota
Enterococcus durans KLDS 6.0930 [CP012384]
692223
692142
-
Leu
CAG
-
¡û
>W10100586
ABSC01000323
Bacillota
Enterococcus faecium E1679 [ABSC]
286
205
-
Leu
CAG
[ENA]
¡û
>W11100586
ABSC01000323
Bacillota
Enterococcus faecium E1679 [ABSC]
286
205
-
Leu
CAG
[ENA]
¡û
>W1511187709
JMGP01000001
Bacillota
Enterococcus gallinarum A6981 [JMGP]
194850
194769
-
Leu
CAG
[ENA]
¡û
>W1511346914
JRHQ01000077
Bacillota
Enterococcus faecium UC7265 [JRHQ]
3116
3035
-
Leu
CAG
[ENA]
¡û
>W1610066939
BCQE01000014
Bacillota
Enterococcus gallinarum NBRC 100675 [BCQE]
84728
84647
-
Leu
CAG
[ENA]
¡û
>W121001844
ADLY01000016
Bacillota
Enterococcus saccharolyticus 30_1 [ADLY]
40716
40635
-
Leu
CAG
[ENA]
¡û
>W121063258
AJKH01000059
Bacillota
Enterococcus faecium LCT-EF90 [AJKH]
23297
23216
-
Leu
CAG
[ENA]
¡û
>W1610682825
LKPF01000088
Bacillota
Enterococcus durans faecium [LKPF]
16572
16491
-
Leu
CAG
[ENA]
¡û
>W1610789438
LOHT01000341
Bacillota
Enterococcus faecium [LOHT]
21041
20960
-
Leu
CAG
[ENA]
¡û
>W1710064370
BCQE01000014
Bacillota
Enterococcus gallinarum NBRC 100675 [BCQE]
84728
84647
-
Leu
CAG
[ENA]
¡û
>W1710659410
JXKP01000030
Bacillota
Enterococcus gallinarum [JXKP]
35506
35587
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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