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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182270 (45 seq.)
>W1711338584
MBTF01000001
Bacteroidota
Mucilaginibacter pedocola [MBTF]
545671
545747
+
Met
CAT
[ENA]
¡û
>W1711360545
MDJS01000001
Bacteroidota
Mucilaginibacter sp. PPCGB 2223 [MDJS]
1246063
1246137
+
Met
CAT
[ENA]
¡û
>W1711503557
MKTS01000007
Bacteroidota
Mucilaginibacter sp. 44-25 [MKTS]
13030
12956
-
Met
CAT
[ENA]
¡û
>W1711629937
MPPL01000001
Bacteroidota
Mucilaginibacter polytrichastri [MPPL]
3140258
3140334
+
Met
CAT
[ENA]
¡û
>W131205424
ATDL01000006
Bacteroidota
Sphingobacterium paucimobilis 1398 [ATDL]
7389
7315
-
Met
CAT
[ENA]
¡û
>W141222955
BACV01000814
Bacteroidota
Cytophagales bacterium B6 B6 [BACV]
9006
9082
+
Met
CAT
[ENA]
¡û
>WENV183730103
PJTR01000731
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
13154
13228
+
Ile2
CAT
[ENA]
¢þ
>WENV183730985
PJTS01003261
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
368
294
-
Ile2
CAT
[ENA]
¢þ
>WENV183734148
PJTZ01000091
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
29582
29508
-
Ile2
CAT
[ENA]
¢þ
>WENV183741136
PJUF01045570
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
231
305
+
Ile2
CAT
[ENA]
¢þ
>C181001416
AP017313
Bacteroidota
Mucilaginibacter gotjawali SA3-7 [AP017313]
2011948
2011874
-
Met
CAT
-
¡û
>C181072008
CP022743
Bacteroidota
Mucilaginibacter xinganensis BJC16-A31 [CP022743]
2579769
2579695
-
Met
CAT
-
¡û
>C181225992
LT906468
Bacteroidota
Sphingobacterium mizutaii NCTC12149 [LT906468]
2583653
2583579
-
Met
CAT
-
¡û
>C191096522
CP032869
Bacteroidota
Mucilaginibacter celer HYN0043 [CP032869]
2168398
2168472
+
Met
CAT
-
¡û
>C191221549
LR590470
Bacteroidota
Sphingobacterium daejeonense NCTC13534 [LR590470]
2707997
2708071
+
Met
CAT
-
¡û
>W09123592
ACHA01000111
Bacteroidota
Sphingobacterium spiritivorum ATCC 33861 [ACHA]
33914
33988
+
Met
CAT
[ENA]
¡û
>W1911136217
NOUX01000003
Bacteroidota
Sphingobacterium cellulitidis R-53603 [NOUX]
317649
317723
+
Met
CAT
[ENA]
¡û
>W1911136274
NOUY01000022
Bacteroidota
Sphingobacterium cellulitidis R-53745 [NOUY]
16150
16076
-
Met
CAT
[ENA]
¡û
>W1911219798
NRSW01000001
Bacteroidota
Mucilaginibacter sp. MD40 [NRSW]
2914879
2914953
+
Met
CAT
[ENA]
¡û
>W1911747176
QWDC01000001
Bacteroidota
Mucilaginibacter conchicola MYSH2 [QWDC]
1008708
1008782
+
Met
CAT
[ENA]
¡û
>W1810069084
PEBA01000028
Bacteroidota
Sphingobacterium sp. 1.A.5 [PEBA]
2664
2738
+
Met
CAT
[ENA]
¡û
>W1810090293
PGFJ01000001
Bacteroidota
Mucilaginibacter auburnensis DSM 28175 [PGFJ]
1604278
1604352
+
Met
CAT
[ENA]
¡û
>W1810364525
PVTH01000007
Bacteroidota
Arcticibacter pallidicorallinus CGMCC 1.9313 [PVTH]
130509
130583
+
Met
CAT
[ENA]
¡û
>W1810405017
PYLS01000005
Bacteroidota
Pedobacter yulinensis YL28-9 [PYLS]
1538513
1538439
-
Met
CAT
[ENA]
¡û
>W1810543355
QDKG01000001
Bacteroidota
Sphingobacterium corticibacter 2c-3 [QDKG]
1144582
1144656
+
Met
CAT
[ENA]
¡û
>W1810584222
QEYR01000011
Bacteroidota
Mucilaginibacter rubeus P1 [QEYR]
318587
318513
-
Met
CAT
[ENA]
¡û
>W1810587228
QFKU01000001
Bacteroidota
Mucilaginibacter kameinonensis P4 [QFKU]
544293
544367
+
Met
CAT
[ENA]
¡û
>W1810587284
QFKV01000008
Bacteroidota
Mucilaginibacter rubeus P3 [QFKV]
9538
9464
-
Met
CAT
[ENA]
¡û
>W1810587350
QFKW01000034
Bacteroidota
Mucilaginibacter rubeus P2 [QFKW]
195906
195832
-
Met
CAT
[ENA]
¡û
>W1810676186
QKLV01000004
Bacteroidota
Mucilaginibacter sp. OV119 [QKLV]
266594
266668
+
Met
CAT
[ENA]
¡û
>W1810753595
QPCG01000002
Bacteroidota
Mucilaginibacter endophyticus RS1 [QPCG]
101982
102056
+
Met
CAT
[ENA]
¡û
>W1511108339
JJMU01000067
Bacteroidota
Sphingobacterium deserti ACCC 05744 [JJMU]
41676
41600
-
Met
CAT
[ENA]
¡û
>W1511352469
JROE01000001
Bacteroidota
Sphingobacteriaceae bacterium DW12 [JROE]
158560
158634
+
Met
CAT
[ENA]
¡û
>W1610867542
LQXS01000002
Bacteroidota
Sphingobacterium sp. CFCC 11742 [LQXS]
643579
643655
+
Met
CAT
[ENA]
¡û
>W1710505631
FMTV01000001
Bacteroidota
Mucilaginibacter sp. NFR10 [FMTV]
1482243
1482167
-
Met
CAT
[ENA]
¡û
>W1710516033
FNCG01000038
Bacteroidota
Mucilaginibacter gossypii [FNCG]
4476
4400
-
Met
CAT
[ENA]
¡û
>W1710521445
FNGK01000001
Bacteroidota
Sphingobacterium mizutaii [FNGK]
1303695
1303621
-
Met
CAT
[ENA]
¡û
>W1710525870
FNJV01000005
Bacteroidota
Mucilaginibacter sp. OK268 [FNJV]
53409
53333
-
Met
CAT
[ENA]
¡û
>W1710543141
FNZR01000012
Bacteroidota
Parapedobacter koreensis [FNZR]
92104
92028
-
Met
CAT
[ENA]
¡û
>W1710576368
FOZZ01000002
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
432529
432453
-
Met
CAT
[ENA]
¡û
>W1710577050
FPAM01000018
Bacteroidota
Mucilaginibacter polytrichastri [FPAM]
903
979
+
Met
CAT
[ENA]
¡û
>W1710595923
FTMG01000001
Bacteroidota
Mucilaginibacter lappiensis [FTMG]
227130
227206
+
Met
CAT
[ENA]
¡û
>W1710603635
FUZF01000004
Bacteroidota
Sphingobacterium nematocida [FUZF]
270350
270276
-
Met
CAT
[ENA]
¡û
>W1710606375
FWXT01000004
Bacteroidota
Pedobacter africanus [FWXT]
418664
418738
+
Met
CAT
[ENA]
¡û
>W1710608325
FXAU01000001
Bacteroidota
Sphingobacterium psychroaquaticum [FXAU]
700595
700669
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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