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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182272 (48 seq.)
>W1711082167
LSTR01000017
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
1717
1633
-
Leu
CAA
[ENA]
¡û
>W1711083846
LSVG01000009
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
109973
110057
+
Leu
CAA
[ENA]
¡û
>W1711146783
LVJD01000267
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
6266
6350
+
Leu
CAA
[ENA]
¡û
>W1711421945
MIAI01000039
Alphaproteobacteria
Sphingomonadales bacterium GWF1_63_6 [MIAI]
9258
9342
+
Leu
CAA
[ENA]
¡û
>W1712076988
NGUN01000003
Alphaproteobacteria
Sphingobium sp. GW456-12-10-14-TSB1 [NGUN]
1688024
1687940
-
Leu
CAA
[ENA]
¡û
>C171049873
CP016456
Alphaproteobacteria
Sphingobium sp. RAC03 [CP016456]
2515108
2515192
+
Leu
CAA
-
¡û
>W131003017
AGZU01000016
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
75872
75956
+
Leu
CAA
[ENA]
¡û
>W131052401
AMYX01000212
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
1656
1572
-
Leu
CAA
[ENA]
¡û
>W131241125
BARE01000015
Alphaproteobacteria
Sphingobium xenophagum NBRC 107872 [BARE]
20320
20236
-
Leu
CAA
[ENA]
¡û
>W131251312
CAVK010000164
Alphaproteobacteria
Sphingobium indicum BiD32 [CAVK]
5779
5863
+
Leu
CAA
[ENA]
¡û
>WENV183729805
PJTR01000089
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
116317
116233
-
Leu
CAA
[ENA]
¢þ
>WENV183730509
PJTS01000080
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
87303
87219
-
Leu
CAA
[ENA]
¢þ
>WENV183732632
PJTX01004187
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
2128
2212
+
Leu
CAA
[ENA]
¢þ
>WENV183732963
PJTY01000009
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
243344
243428
+
Leu
CAA
[ENA]
¢þ
>WENV183734338
PJTZ01002484
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
2225
2309
+
Leu
CAA
[ENA]
¢þ
>WENV183736882
PJUD01000078
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
72803
72887
+
Leu
CAA
[ENA]
¢þ
>WENV170136150
CENV01006087
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1778
1862
+
Leu
CAA
[ENA]
¢þ
>W141426734
JEMV01000019
Alphaproteobacteria
Sphingobium sp. Ant17 [JEMV]
47433
47517
+
Leu
CAA
[ENA]
¡û
>C181047604
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
3968248
3968164
-
Leu
CAA
-
¡û
>C181072127
CP022745
Alphaproteobacteria
Sphingobium xenophagum C1 [CP022745, CP022746]
92888
92804
-
Leu
CAA
-
¡û
>C181089669
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
963466
963550
+
Leu
CAA
-
¡û
>W141520448
JGVR01000009
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
45379
45295
-
Leu
CAA
[ENA]
¡û
>C191063659
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
1893574
1893490
-
Leu
CAA
-
¡û
>C191103904
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
2050071
2049987
-
Leu
CAA
-
¡û
>C191163684
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
2599267
2599351
+
Leu
CAA
-
¡û
>W141807753
JPOU01000017
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
18479
18563
+
Leu
CAA
[ENA]
¡û
>W141808035
JPPQ01000069
Alphaproteobacteria
Sphingobium sp. ba1 [JPPQ]
1450359
1450443
+
Leu
CAA
[ENA]
¡û
>W1910006996
BBQY01000004
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
450561
450645
+
Leu
CAA
[ENA]
¡û
>W1910199132
FBVT01000018
Alphaproteobacteria
Sphingobium sp. Z007 [FBVT]
56585
56669
+
Leu
CAA
[ENA]
¡û
>W1910199161
FBVU01000002
Alphaproteobacteria
Sphingobium sp. Z007 [FBVU]
56534
56618
+
Leu
CAA
[ENA]
¡û
>W1910199220
FBVV01000009
Alphaproteobacteria
Sphingobium sp. Z007 [FBVV]
165991
165907
-
Leu
CAA
[ENA]
¡û
>W1910199309
FBVW01000051
Alphaproteobacteria
Sphingobium sp. Z007 [FBVW]
57084
57000
-
Leu
CAA
[ENA]
¡û
>W1910199320
FBVX01000009
Alphaproteobacteria
Sphingobium sp. Z007 [FBVX]
65695
65611
-
Leu
CAA
[ENA]
¡û
>W1910199966
FBXK01000005
Alphaproteobacteria
Sphingobium sp. Z007 [FBXK]
1773321
1773405
+
Leu
CAA
[ENA]
¡û
>W1910744295
MIAK01000034
Alphaproteobacteria
Sphingomonadales bacterium RIFCSPLOWO2_12_FULL_63_15 [MIAK]
1627
1543
-
Leu
CAA
[ENA]
¡û
>W1911074985
NMUA01000001
Alphaproteobacteria
Sphingobium sp. D43FB [NMUA]
242608
242524
-
Leu
CAA
[ENA]
¡û
>W1911114841
NOIW01000114
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
12658
12574
-
Leu
CAA
[ENA]
¡û
>W1911688299
QLJK01000012
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
26201
26285
+
Leu
CAA
[ENA]
¡û
>W1911722446
QRAL01000028
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
13872
13956
+
Leu
CAA
[ENA]
¡û
>W1810400881
PYGL01000010
Alphaproteobacteria
Sphingobium sp. AEW4 [PYGL]
152183
152267
+
Leu
CAA
[ENA]
¡û
>W1510756937
JACT01000001
Alphaproteobacteria
Sphingobium cupriresistens LL01 [JACT]
944396
944480
+
Leu
CAA
[ENA]
¡û
>W1510941320
JFFT01000004
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
229281
229197
-
Leu
CAA
[ENA]
¡û
>W1511581108
LARW01000061
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
72046
71962
-
Leu
CAA
[ENA]
¡û
>W11176444
AFXE01000106
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
13882
13966
+
Leu
CAA
[ENA]
¡û
>W121068950
AJVL01000033
Alphaproteobacteria
Sphingobium sp. AP49 [AJVL]
3877
3793
-
Leu
CAA
[ENA]
¡û
>W1610920952
LSTR01000017
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
1717
1633
-
Leu
CAA
[ENA]
¡û
>W1610922599
LSVG01000009
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
109973
110057
+
Leu
CAA
[ENA]
¡û
>W1710592143
FRCG01000001
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
568033
567949
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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