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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182299 (125 seq.)
>W131010474
AHYN01000009
Bacillota
Enterococcus faecalis V583 [AHYN]
76002
76077
+
Met
CAT
[ENA]
¡û
>W131012079
AIJA01000002
Bacillota
Enterococcus faecalis 7330259-5 [AIJA]
22201
22126
-
Met
CAT
[ENA]
¡û
>W131012403
AIJH01000002
Bacillota
Enterococcus faecalis B1290 [AIJH]
935487
935412
-
Met
CAT
[ENA]
¡û
>W131012494
AIJI01000009
Bacillota
Enterococcus faecalis B1327 [AIJI]
1268796
1268721
-
Met
CAT
[ENA]
¡û
>W131012529
AIJJ01000002
Bacillota
Enterococcus faecalis B1376 [AIJJ]
934119
934044
-
Met
CAT
[ENA]
¡û
>W131012579
AIJK01000008
Bacillota
Enterococcus faecalis B1385 [AIJK]
128554
128629
+
Met
CAT
[ENA]
¡û
>W131012855
AIPS01000033
Bacillota
Enterococcus faecalis B1005 [AIPS]
935284
935209
-
Met
CAT
[ENA]
¡û
>W131012892
AIPT01000005
Bacillota
Enterococcus faecalis B1138 [AIPT]
1444100
1444025
-
Met
CAT
[ENA]
¡û
>W131012963
AIPU01000019
Bacillota
Enterococcus faecalis B1249 [AIPU]
934150
934075
-
Met
CAT
[ENA]
¡û
>W131013021
AIPV01000011
Bacillota
Enterococcus faecalis B1441 [AIPV]
985253
985178
-
Met
CAT
[ENA]
¡û
>W131013093
AIPW01000016
Bacillota
Enterococcus faecalis B1505 [AIPW]
1609
1534
-
Met
CAT
[ENA]
¡û
>W131013132
AIPX01000016
Bacillota
Enterococcus faecalis B1532 [AIPX]
934098
934023
-
Met
CAT
[ENA]
¡û
>W131013200
AIPY01000017
Bacillota
Enterococcus faecalis B1586 [AIPY]
934205
934130
-
Met
CAT
[ENA]
¡û
>W131013253
AIPZ01000009
Bacillota
Enterococcus faecalis B1618 [AIPZ]
2307
2232
-
Met
CAT
[ENA]
¡û
>W131013304
AIQA01000030
Bacillota
Enterococcus faecalis B1623 [AIQA]
933707
933632
-
Met
CAT
[ENA]
¡û
>W131013361
AIQB01000019
Bacillota
Enterococcus faecalis B1678 [AIQB]
985453
985378
-
Met
CAT
[ENA]
¡û
>W131013431
AIQC01000021
Bacillota
Enterococcus faecalis B1696 [AIQC]
1609
1534
-
Met
CAT
[ENA]
¡û
>W131013492
AIQD01000017
Bacillota
Enterococcus faecalis B1719 [AIQD]
983622
983547
-
Met
CAT
[ENA]
¡û
>W131013542
AIQE01000016
Bacillota
Enterococcus faecalis B1734 [AIQE]
74740
74665
-
Met
CAT
[ENA]
¡û
>W131013587
AIQF01000014
Bacillota
Enterococcus faecalis B1843 [AIQF]
983529
983454
-
Met
CAT
[ENA]
¡û
>W131013638
AIQG01000010
Bacillota
Enterococcus faecalis B1851 [AIQG]
933822
933747
-
Met
CAT
[ENA]
¡û
>W131013690
AIQH01000013
Bacillota
Enterococcus faecalis B1874 [AIQH]
983109
983034
-
Met
CAT
[ENA]
¡û
>W131013798
AIQJ01000012
Bacillota
Enterococcus faecalis B1933 [AIQJ]
934119
934044
-
Met
CAT
[ENA]
¡û
>W131013848
AIQK01000011
Bacillota
Enterococcus faecalis B2202 [AIQK]
981224
981149
-
Met
CAT
[ENA]
¡û
>W131013948
AIQM01000032
Bacillota
Enterococcus faecalis B2211 [AIQM]
983429
983354
-
Met
CAT
[ENA]
¡û
>W131014006
AIQN01000010
Bacillota
Enterococcus faecalis B2255 [AIQN]
985006
984931
-
Met
CAT
[ENA]
¡û
>W131014058
AIQO01000034
Bacillota
Enterococcus faecalis B2277 [AIQO]
934007
933932
-
Met
CAT
[ENA]
¡û
>W131014110
AIQP01000013
Bacillota
Enterococcus faecalis B2391 [AIQP]
985632
985557
-
Met
CAT
[ENA]
¡û
>W131014165
AIQQ01000013
Bacillota
Enterococcus faecalis B2488 [AIQQ]
2307
2232
-
Met
CAT
[ENA]
¡û
>W131014224
AIQR01000014
Bacillota
Enterococcus faecalis B2535 [AIQR]
934206
934131
-
Met
CAT
[ENA]
¡û
>W131014285
AIQS01000016
Bacillota
Enterococcus faecalis B2557 [AIQS]
934237
934162
-
Met
CAT
[ENA]
¡û
>W131014355
AIQT01000019
Bacillota
Enterococcus faecalis B2593 [AIQT]
980797
980722
-
Met
CAT
[ENA]
¡û
>W131014399
AIQU01000021
Bacillota
Enterococcus faecalis B2670 [AIQU]
74526
74451
-
Met
CAT
[ENA]
¡û
>W131014449
AIQV01000016
Bacillota
Enterococcus faecalis B2685 [AIQV]
981652
981577
-
Met
CAT
[ENA]
¡û
>W131014528
AIQW01000014
Bacillota
Enterococcus faecalis B2687 [AIQW]
934007
933932
-
Met
CAT
[ENA]
¡û
>W131014586
AIQX01000027
Bacillota
Enterococcus faecalis B2802 [AIQX]
980517
980442
-
Met
CAT
[ENA]
¡û
>W131014632
AIQY01000014
Bacillota
Enterococcus faecalis B2813 [AIQY]
934098
934023
-
Met
CAT
[ENA]
¡û
>W131014678
AIQZ01000017
Bacillota
Enterococcus faecalis B2864 [AIQZ]
934037
933962
-
Met
CAT
[ENA]
¡û
>W131014735
AIRA01000035
Bacillota
Enterococcus faecalis B2867 [AIRA]
934009
933934
-
Met
CAT
[ENA]
¡û
>W131014782
AIRB01000021
Bacillota
Enterococcus faecalis B2949 [AIRB]
934994
934919
-
Met
CAT
[ENA]
¡û
>W131014833
AIRC01000015
Bacillota
Enterococcus faecalis B3031 [AIRC]
980979
980904
-
Met
CAT
[ENA]
¡û
>W131014943
AIRE01000015
Bacillota
Enterococcus faecalis B3053 [AIRE]
983247
983172
-
Met
CAT
[ENA]
¡û
>W131014995
AIRF01000032
Bacillota
Enterococcus faecalis B3119 [AIRF]
983244
983169
-
Met
CAT
[ENA]
¡û
>W131015050
AIRG01000016
Bacillota
Enterococcus faecalis B3126 [AIRG]
934148
934073
-
Met
CAT
[ENA]
¡û
>W131015121
AIRH01000033
Bacillota
Enterococcus faecalis B3196 [AIRH]
980504
980429
-
Met
CAT
[ENA]
¡û
>W131015183
AIRI01000025
Bacillota
Enterococcus faecalis B3286 [AIRI]
933904
933829
-
Met
CAT
[ENA]
¡û
>W131015283
AIRK01000035
Bacillota
Enterococcus faecalis B4008 [AIRK]
934082
934007
-
Met
CAT
[ENA]
¡û
>W131015338
AIRL01000029
Bacillota
Enterococcus faecalis B4018 [AIRL]
934119
934044
-
Met
CAT
[ENA]
¡û
>W131015409
AIRM01000026
Bacillota
Enterococcus faecalis B4148 [AIRM]
935494
935419
-
Met
CAT
[ENA]
¡û
>W131015463
AIRN01000039
Bacillota
Enterococcus faecalis B4163 [AIRN]
934009
933934
-
Met
CAT
[ENA]
¡û
>W131015506
AIRO01000034
Bacillota
Enterococcus faecalis B4259 [AIRO]
934090
934015
-
Met
CAT
[ENA]
¡û
>W131015560
AIRP01000035
Bacillota
Enterococcus faecalis B4267 [AIRP]
980473
980398
-
Met
CAT
[ENA]
¡û
>W131015609
AIRQ01000018
Bacillota
Enterococcus faecalis B4270 [AIRQ]
2307
2232
-
Met
CAT
[ENA]
¡û
>W131015663
AIRR01000026
Bacillota
Enterococcus faecalis B4411 [AIRR]
1444487
1444412
-
Met
CAT
[ENA]
¡û
>W131015711
AIRS01000012
Bacillota
Enterococcus faecalis B4568 [AIRS]
981054
980979
-
Met
CAT
[ENA]
¡û
>W131015760
AIRT01000018
Bacillota
Enterococcus faecalis B4638 [AIRT]
983388
983313
-
Met
CAT
[ENA]
¡û
>W131015816
AIRU01000014
Bacillota
Enterococcus faecalis B4672 [AIRU]
934098
934023
-
Met
CAT
[ENA]
¡û
>W131015864
AIRV01000015
Bacillota
Enterococcus faecalis B4674 [AIRV]
2262
2187
-
Met
CAT
[ENA]
¡û
>W131015911
AIRW01000016
Bacillota
Enterococcus faecalis B4969 [AIRW]
934119
934044
-
Met
CAT
[ENA]
¡û
>W131016005
AIRY01000014
Bacillota
Enterococcus faecalis B594 [AIRY]
181615
181540
-
Met
CAT
[ENA]
¡û
>W131016049
AIRZ01000015
Bacillota
Enterococcus faecalis B878 [AIRZ]
213089
213014
-
Met
CAT
[ENA]
¡û
>W131016095
AISA01000015
Bacillota
Enterococcus faecalis B939 [AISA]
986123
986048
-
Met
CAT
[ENA]
¡û
>W131027296
AJAG01000025
Bacillota
Enterococcus faecalis UAA1489 [AJAG]
205503
205428
-
Met
CAT
[ENA]
¡û
>W131028340
AJBB01000015
Bacillota
Enterococcus faecalis V587 [AJBB]
2307
2232
-
Met
CAT
[ENA]
¡û
>W131028837
AJBK01000037
Bacillota
Enterococcus faecalis B5035 [AJBK]
2307
2232
-
Met
CAT
[ENA]
¡û
>W131032511
AJDZ01000011
Bacillota
Enterococcus faecalis MMH594 [AJDZ]
933925
933850
-
Met
CAT
[ENA]
¡û
>W131032625
AJEB01000016
Bacillota
Enterococcus faecalis SF370 [AJEB]
2307
2232
-
Met
CAT
[ENA]
¡û
>W131033439
AJEP01000018
Bacillota
Enterococcus faecalis SF21521 [AJEP]
827602
827527
-
Met
CAT
[ENA]
¡û
>W131188547
ASCX01000008
Bacillota
Enterococcus faecalis Mar-79 [ASCX]
21898
21823
-
Met
CAT
[ENA]
¡û
>W131202256
ASWP01000006
Bacillota
Enterococcus faecalis V583 [ASWP]
983485
983410
-
Met
CAT
[ENA]
¡û
>W1711943383
NBDW01000002
Bacillota
Enterococcus faecalis [NBDW]
75926
76001
+
Met
CAT
[ENA]
¡û
>W1712109078
NJFB01000001
Bacillota
Enterococcus faecalis [NJFB]
432659
432734
+
Met
CAT
[ENA]
¡û
>C009108
AE016830
Bacillota
Enterococcus faecalis V583 [AE016830]
2006349
2006276
-
Met
CAT
[Ensembl]
¡û
>C171095151
CP019512
Bacillota
Enterococcus faecalis CLB21560 [CP019512]
1914648
1914573
-
Met
CAT
-
¡û
>WENV180312642
OBJZ01000023
[OBJZ] human gut metagenome; fecal sample
47797
47722
-
Ile2
CAT
[ENA]
¢þ
>WENV180312823
OBJZ01000205
[OBJZ] human gut metagenome; fecal sample
1827
1752
-
Ile2
CAT
[ENA]
¢þ
>WENV180421787
OBVR01000426
[OBVR] human gut metagenome; faeces
6706
6631
-
Ile2
CAT
[ENA]
¢þ
>WENV180422071
OBVS01000138
[OBVS] human gut metagenome; faeces
1653
1578
-
Ile2
CAT
[ENA]
¢þ
>WENV181327491
OFLQ01000110
[OFLQ] metagenome; faeces
23375
23448
+
Met
CAT
[ENA]
¢þ
>W141140836
AWPI01000070
Bacillota
Enterococcus faecalis E12 [AWPI]
31814
31739
-
Met
CAT
[ENA]
¡û
>WENV181817172
OGTM01000038
[OGTM] human gut metagenome; fecal sample 3 from infant 7
16009
15934
-
Ile2
CAT
[ENA]
¢þ
>WENV182408778
OIFG01000005
[OIFG] human gut metagenome; stool
170441
170366
-
Ile2
CAT
[ENA]
¢þ
>WENV182410141
OIFK01000168
[OIFK] human gut metagenome; stool
1609
1534
-
Ile2
CAT
[ENA]
¢þ
>WENV182811173
OJXJ01000015
[OJXJ] human gut metagenome; human gut
67330
67405
+
Ile2
CAT
[ENA]
¢þ
>WENV182831256
OKEE01000224
[OKEE] human gut metagenome; human gut
470
545
+
Ile2
CAT
[ENA]
¢þ
>W141281502
JAHU01000001
Bacillota
Enterococcus faecalis B324 [JAHU]
944676
944601
-
Met
CAT
[ENA]
¡û
>W141282187
JAIG01000001
Bacillota
Enterococcus faecalis B388 [JAIG]
980710
980635
-
Met
CAT
[ENA]
¡û
>WENV182845141
OKJA01000016
[OKJA] human gut metagenome; human gut
66479
66554
+
Ile2
CAT
[ENA]
¢þ
>WENV182858409
OKOE01000013
[OKOE] human gut metagenome; human gut
66597
66672
+
Ile2
CAT
[ENA]
¢þ
>WENV182862233
OKPK01000729
[OKPK] human gut metagenome; human gut
400
475
+
Ile2
CAT
[ENA]
¢þ
>WENV182862463
OKPM01003372
[OKPM] human gut metagenome; human gut
649
574
-
Ile2
CAT
[ENA]
¢þ
>WENV182863765
OKPU01004064
[OKPU] human gut metagenome; human gut
32
107
+
Ile2
CAT
[ENA]
¢þ
>WENV182960832
OKWK01000019
[OKWK] human gut metagenome; stool
156327
156402
+
Ile2
CAT
[ENA]
¢þ
>C181181779
CP029612
Bacillota
Enterococcus faecalis H25 [CP029612]
1923866
1923791
-
Met
CAT
-
¡û
>C181195005
CP031027
Bacillota
Enterococcus faecalis TY1 [CP031027]
1874585
1874510
-
Met
CAT
-
¡û
>C191164876
CP039296
Bacillota
Enterococcus faecalis VE14089 [CP039296]
2006347
2006272
-
Met
CAT
-
¡û
>C191168815
CP039548
Bacillota
Enterococcus faecalis VE18379 [CP039548]
2006347
2006272
-
Met
CAT
-
¡û
>C191168880
CP039549
Bacillota
Enterococcus faecalis VE18395 [CP039549]
2006347
2006272
-
Met
CAT
-
¡û
>W141779733
JOOC01000002
Bacillota
Enterococcus faecalis 68A [JOOC]
11904
11829
-
Met
CAT
[ENA]
¡û
>W09115200
ACAE01000077
Bacillota
Enterococcus faecalis T2 [ACAE]
38754
38829
+
Met
CAT
[ENA]
¡û
>W1910606343
LEPN01000007
Bacillota
Enterococcus faecalis 263EA1 [LEPN]
146237
146310
+
Met
CAT
[ENA]
¡û
>W1910606767
LEPU01000009
Bacillota
Enterococcus faecalis 302EA1 [LEPU]
148953
149026
+
Met
CAT
[ENA]
¡û
>W1910859711
NCAD01000001
Bacillota
Enterococcus faecalis IBUN9046YE [NCAD]
8673
8598
-
Met
CAT
[ENA]
¡û
>W1910935605
NIXL01000084
Bacillota
Enterococcus faecalis SK460 [NIXL]
11960
12035
+
Met
CAT
[ENA]
¡û
>W1810316349
PTYE01000071
Bacillota
Enterococcus faecalis CVM N52773 [PTYE]
35805
35878
+
Met
CAT
[ENA]
¡û
>W1810462903
PZZE01000001
Bacillota
Enterococcus faecalis B1376 [PZZE]
1983611
1983536
-
Met
CAT
[ENA]
¡û
>W1810462970
PZZF01000004
Bacillota
Enterococcus faecalis B1532 [PZZF]
1609
1534
-
Met
CAT
[ENA]
¡û
>W1810463032
PZZG01000002
Bacillota
Enterococcus faecalis B1734 [PZZG]
1983613
1983538
-
Met
CAT
[ENA]
¡û
>W1810463097
PZZH01000001
Bacillota
Enterococcus faecalis B2535 [PZZH]
1982270
1982195
-
Met
CAT
[ENA]
¡û
>W1810463162
PZZI01000002
Bacillota
Enterococcus faecalis B2949 [PZZI]
1942658
1942583
-
Met
CAT
[ENA]
¡û
>W1810463227
PZZJ01000002
Bacillota
Enterococcus faecalis B3286 [PZZJ]
1984927
1984852
-
Met
CAT
[ENA]
¡û
>W1810463292
PZZK01000002
Bacillota
Enterococcus faecalis B4969 [PZZK]
1983625
1983550
-
Met
CAT
[ENA]
¡û
>W10124846
AEBN01000013
Bacillota
Enterococcus faecalis TX0309A [AEBN]
44361
44286
-
Met
CAT
[ENA]
¡û
>W10124907
AEBO01000022
Bacillota
Enterococcus faecalis TX0309B [AEBO]
44237
44162
-
Met
CAT
[ENA]
¡û
>W10125312
AEBW01000053
Bacillota
Enterococcus faecalis TX2134 [AEBW]
121772
121697
-
Met
CAT
[ENA]
¡û
>W1511365915
JSES01000015
Bacillota
Enterococcus faecalis ATCC 51299 [JSES]
8796
8871
+
Met
CAT
[ENA]
¡û
>W1511403157
JTKW01000033
Bacillota
Enterococcus faecalis 19 [JTKW]
228510
228435
-
Met
CAT
[ENA]
¡û
>W1511448992
JVAN01000191
Bacillota
Enterococcus faecalis 600_EFLS [JVAN]
31930
31855
-
Met
CAT
[ENA]
¡û
>W1511449514
JVBD01000055
Bacillota
Enterococcus faecalis 584_EFLS [JVBD]
80033
80108
+
Met
CAT
[ENA]
¡û
>W11131733
AEBN01000013
Bacillota
Enterococcus faecalis TX0309A [AEBN]
44361
44286
-
Met
CAT
[ENA]
¡û
>W11131794
AEBO01000022
Bacillota
Enterococcus faecalis TX0309B [AEBO]
44237
44162
-
Met
CAT
[ENA]
¡û
>W11132199
AEBW01000053
Bacillota
Enterococcus faecalis TX2134 [AEBW]
121772
121697
-
Met
CAT
[ENA]
¡û
>W121120680
ALZM01000064
Bacillota
Enterococcus faecalis ERV25 [ALZM]
114259
114332
+
Met
CAT
[ENA]
¡û
>W1610016114
AOPW01000031
Bacillota
Enterococcus faecalis EnGen0310 = MMH594 [AOPW]
93640
93715
+
Met
CAT
[ENA]
¡û
>W1710013005
AOPW01000031
Bacillota
Enterococcus faecalis EnGen0310 = MMH594 [AOPW]
93640
93715
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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