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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182303 (45 seq.)
>W1710854769
LLXU01000116
Gammaproteobacteria
Stenotrophomonas panacihumi [LLXU]
11701
11777
+
His
GTG
[ENA]
¡û
>W1711386619
MEFO01000061
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-123 [MEFO]
3500
3424
-
His
GTG
[ENA]
¡û
>W131230625
AUHT01000011
Gammaproteobacteria
Lysobacter defluvii DSM 18482 [AUHT]
196812
196736
-
His
GTG
[ENA]
¡û
>W1711506450
MKWK01000010
Gammaproteobacteria
Stenotrophomonas sp. 69-14 [MKWK]
34565
34641
+
His
GTG
[ENA]
¡û
>WENV181173136
OEIV011228561
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
34
110
+
His
GTG
[ENA]
¢þ
>W141274341
JAAN01000014
Gammaproteobacteria
Luteimonas huabeiensis HB2 [JAAN]
442641
442717
+
His
GTG
[ENA]
¡û
>WENV183731888
PJTU01000002
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
307571
307495
-
His
GTG
[ENA]
¢þ
>WENV183733607
PJTY01006440
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1565
1489
-
His
GTG
[ENA]
¢þ
>WENV183733930
PJTZ01000003
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
307571
307495
-
His
GTG
[ENA]
¢þ
>WENV183735447
PJUB01000007
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
102894
102970
+
His
GTG
[ENA]
¢þ
>WENV183736048
PJUC01000005
[PJUC] soil metagenome; Soil enriched on filter paper
102823
102899
+
His
GTG
[ENA]
¢þ
>WENV183741563
PJUG01000071
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
33126
33202
+
His
GTG
[ENA]
¢þ
>WENV183741882
PJUH01000001
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
308572
308496
-
His
GTG
[ENA]
¢þ
>WENV183742779
PJUI01000155
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
2997
2921
-
His
GTG
[ENA]
¢þ
>WENV183742995
PJUJ01000006
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
211916
211992
+
His
GTG
[ENA]
¢þ
>WENV183743801
PJUK01000002
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
308572
308496
-
His
GTG
[ENA]
¢þ
>WENV183744508
PJUL01000001
[PJUL] feces metagenome; Chicken feces enriched on filter paper
308572
308496
-
His
GTG
[ENA]
¢þ
>W141401108
JDSQ01000001
Gammaproteobacteria
Xylella taiwanensis PLS229 [JDSQ]
226278
226202
-
His
GTG
[ENA]
¡û
>C181011035
CP011800
Gammaproteobacteria
Xylella taiwanensis PLS235 [CP011800]
2627232
2627308
+
His
GTG
-
¡û
>C181180366
CP029556
Gammaproteobacteria
Lysobacter oculi 83-4 [CP029556]
564839
564915
+
His
GTG
-
¡û
>C181185974
CP029843
Gammaproteobacteria
Lysobacter maris HZ9B [CP029843]
1524958
1525034
+
His
GTG
-
¡û
>C191139389
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
2313415
2313339
-
His
GTG
-
¡û
>C191189088
CP041242
Gammaproteobacteria
Lysobacter alkalisoli SJ-36 [CP041242]
2518290
2518214
-
His
GTG
-
¡û
>W1911283661
NTJF01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0831 [NTJF]
68088
68164
+
His
GTG
[ENA]
¡û
>W1911283714
NTJG01000004
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0793 [NTJG]
68084
68160
+
His
GTG
[ENA]
¡û
>W1911283755
NTJH01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0792 [NTJH]
68056
68132
+
His
GTG
[ENA]
¡û
>W1911283843
NTJI01000003
Gammaproteobacteria
Xanthomonadaceae bacterium NML93-0399 [NTJI]
205109
205033
-
His
GTG
[ENA]
¡û
>W1911405210
NWQL01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0213 [NWQL]
512421
512497
+
His
GTG
[ENA]
¡û
>W1911405251
NWQM01000001
Gammaproteobacteria
Xanthomonadaceae bacterium NML03-0222 [NWQM]
243792
243868
+
His
GTG
[ENA]
¡û
>W1911405310
NWQN01000021
Gammaproteobacteria
Xanthomonadaceae bacterium NML75-0749 [NWQN]
27112
27036
-
His
GTG
[ENA]
¡û
>W1911405361
NWQO01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML91-0268 [NWQO]
249981
250057
+
His
GTG
[ENA]
¡û
>W1911405409
NWQP01000017
Gammaproteobacteria
Xanthomonadaceae bacterium NML71-0210 [NWQP]
1905
1981
+
His
GTG
[ENA]
¡û
>W1911405504
NWQR01000002
Gammaproteobacteria
Xanthomonadaceae bacterium NML08-0793 [NWQR]
409632
409556
-
His
GTG
[ENA]
¡û
>W1911405536
NWQS01000008
Gammaproteobacteria
Xanthomonadaceae bacterium NML120232 [NWQS]
20060
19984
-
His
GTG
[ENA]
¡û
>W1911405574
NWQT01000007
Gammaproteobacteria
Xanthomonadaceae bacterium NML07-0707 [NWQT]
50404
50328
-
His
GTG
[ENA]
¡û
>W1810452292
PZOY01000011
Gammaproteobacteria
Stenotrophomonas panacihumi GSS15 [PZOY]
99565
99641
+
His
GTG
[ENA]
¡û
>C151077904
CP011144
Gammaproteobacteria
Pseudoxanthomonas suwonensis J1 [CP011144]
509436
509512
+
His
GTG
[Ensembl]
¡û
>C11118150
CP002446
Gammaproteobacteria
Pseudoxanthomonas suwonensis 11-1 [CP002446]
2261102
2261178
+
His
GTG
[Ensembl]
¡û
>W1511582578
LASZ01000022
Gammaproteobacteria
Luteimonas sp. FCS-9 [LASZ]
28165
28241
+
His
GTG
[ENA]
¡û
>C161047126
CP012900
Gammaproteobacteria
Stenotrophomonas acidaminiphila ZAC14D2_NAIMI4_2 [CP012900]
1053444
1053520
+
His
GTG
[Ensembl]
¡û
>W1610026738
AVBH01000086
Gammaproteobacteria
Lysobacter defluvii IMMIB APB-9 = DSM 18482 [AVBH]
1241
1165
-
His
GTG
[ENA]
¡û
>W1610587242
LDJO01000026
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
198048
197972
-
His
GTG
[ENA]
¡û
>W1610717110
LLXU01000116
Gammaproteobacteria
Stenotrophomonas panacihumi [LLXU]
11701
11777
+
His
GTG
[ENA]
¡û
>W1710022787
AVBH01000086
Gammaproteobacteria
Lysobacter defluvii IMMIB APB-9 = DSM 18482 [AVBH]
1241
1165
-
His
GTG
[ENA]
¡û
>W1710706372
LDJO01000026
Gammaproteobacteria
Stenotrophomonas acidaminiphila [LDJO]
198048
197972
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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