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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182331 (19 seq.)
>A171001473
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
456400
456327
-
Thr
TGT
-
¡û
>A171001721
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
1812125
1812198
+
Thr
TGT
-
¡û
>A171002761
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
2236828
2236755
-
Thr
TGT
-
¡û
>A171006789
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
271444
271517
+
Thr
TGT
-
¡û
>WENV170006421
AMWB02021672
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
8211
8284
+
Thr
TGT
[ENA]
¢þ
>WENV170014855
AZIC01001145
[AZIC] marine sediment metagenome; sample MGS-MES from oil contaminated site at the harbour of Messina (Sicily, Italy)
322
395
+
Thr
TGT
[ENA]
¢þ
>At0976
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
2325500
2325573
+
Thr
TGT
[Ensembl]
¡û
>WENV170671701
LAHU01135063
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
401
328
-
Thr
TGT
[ENA]
¢þ
>W1910228302
FNMU01000001
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
85664
85737
+
Thr
TGT
[ENA]
¡û
>W1910471793
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
591752
591825
+
Thr
TGT
[ENA]
¡û
>W1910582975
JWTK01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
418131
418058
-
Thr
TGT
[ENA]
¡û
>W1910672566
MCNQ01000019
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
8932
9005
+
Thr
TGT
[ENA]
¡û
>W1910783589
MPPA01000052
Euryarchaeota
Methanococcoides sp. EBM-47 [MPPA]
81884
81957
+
Thr
TGT
[ENA]
¡û
>W1911492150
OBDR01000017
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
9090
9163
+
Thr
TGT
[ENA]
¡û
>W1911633756
PVBU01000004
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
9123
9196
+
Thr
TGT
[ENA]
¡û
>W1911653198
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
686136
686210
+
Thr
TGT
[ENA]
¡û
>W1610000120
AADH02000001
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
80109
80036
-
Thr
TGT
[ENA]
¡û
>W1610919851
LSRU01000009
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
8152
8225
+
Thr
TGT
[ENA]
¡û
>W1611052519
MAFX01000057
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
46586
46659
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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