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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182333 (28 seq.)
>A171001435
CP001994
Euryarchaeota
Methanohalophilus mahii DSM 5219 [CP001994]
546491
546567
+
Lys
TTT
-
¡û
>A171001638
CP002069
Euryarchaeota
Methanohalobium evestigatum Z-7303 [CP002069]
747615
747542
-
Lys
TTT
-
¡û
>A171001712
CP002101
Euryarchaeota
Methanosalsum zhilinae DSM 4017 [CP002101]
549764
549838
+
Lys
TTT
-
¡û
>A171002736
CP003083
Euryarchaeota
Methanolobus psychrophilus R15 [CP003083]
1008956
1009032
+
Lys
TTT
-
¡û
>A171003004
CP003362
Euryarchaeota
Methanomethylovorans hollandica DSM 15978 [CP003362]
1910123
1910199
+
Lys
TTT
-
¡û
>A171005381
CP009518
Euryarchaeota
Methanococcoides methylutens MM1 [CP009518]
1794492
1794416
-
Lys
TTT
-
¡û
>A171006827
CP017921
Euryarchaeota
Methanohalophilus halophilus Z-7982 [CP017921]
157443
157367
-
Lys
TTT
-
¡û
>WENV170006240
AMWB02010153
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
34505
34429
-
Lys
TTT
[ENA]
¢þ
>At0997
CP000300
Euryarchaeota
Methanococcoides burtonii DSM 6242 [CP000300]
1271469
1271393
-
Lys
TTT
[Ensembl]
¡û
>WENV170694618
LGVD01152518
[LGVD] marine sediment metagenome; sample #3730, Push core (PC) 16 from cruise R/V Atlantis leg AT-15-68, Alvin dive 4635 at
1
75
+
Lys
TTT
[ENA]
¢þ
>WENV170699380
LGVF01539950
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
363
437
+
Lys
TTT
[ENA]
¢þ
>W1910226807
FNCA01000001
Euryarchaeota
Methanolobus vulcani PL 12/M [FNCA]
494491
494567
+
Lys
TTT
[ENA]
¡û
>W1910228335
FNMU01000005
Euryarchaeota
Methanohalophilus halophilus Z-7982 [FNMU]
27715
27791
+
Lys
TTT
[ENA]
¡û
>W1910229832
FOHQ01000001
Euryarchaeota
Methanococcoides vulcani SLH 33 [FOHQ]
426149
426225
+
Lys
TTT
[ENA]
¡û
>W1910230595
FOUJ01000008
Euryarchaeota
Methanolobus profundi Mob M [FOUJ]
37425
37349
-
Lys
TTT
[ENA]
¡û
>W1910471801
FXBN01000001
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [FXBN]
504559
504483
-
Lys
TTT
[ENA]
¡û
>W1910575284
JRHO01000014
Euryarchaeota
Methanococcoides methylutens DSM 2657 [JRHO]
334616
334540
-
Lys
TTT
[ENA]
¡û
>W1910582970
JWTK01000002
Euryarchaeota
Methanohalophilus portucalensis FDF-1 [JWTK]
505324
505400
+
Lys
TTT
[ENA]
¡û
>W1910661862
MBKP01000021
Euryarchaeota
Methanolobus psychrotolerans YSF-03 [MBKP]
47122
47046
-
Lys
TTT
[ENA]
¡û
>W1910672559
MCNQ01000012
Euryarchaeota
Methanohalophilus sp. 2-GBenrich [MCNQ]
27882
27958
+
Lys
TTT
[ENA]
¡û
>W1910783563
MPPA01000010
Euryarchaeota
Methanococcoides sp. EBM-47 [MPPA]
390273
390197
-
Lys
TTT
[ENA]
¡û
>W1911492147
OBDR01000014
Euryarchaeota
Methanohalophilus euhalobius WG-1MB [OBDR]
16441
16365
-
Lys
TTT
[ENA]
¡û
>W1911633768
PVBU01000006
Euryarchaeota
Methanohalophilus euhalobius DSM 10369 [PVBU]
144063
143987
-
Lys
TTT
[ENA]
¡û
>W1911653222
QBKB01000002
Euryarchaeota
Methanohalophilus profundi SLHTYRO [QBKB]
609778
609702
-
Lys
TTT
[ENA]
¡û
>W1610000127
AADH02000003
Euryarchaeota
Methanococcoides burtonii DSM 6242 [AADH]
68875
68951
+
Lys
TTT
[ENA]
¡û
>W1610032605
AZAJ01000001
Euryarchaeota
Methanolobus tindarius DSM 2278 [AZAJ]
2291319
2291243
-
Lys
TTT
[ENA]
¡û
>W1610919856
LSRU01000014
Euryarchaeota
Methanohalophilus sp. T328-1 [LSRU]
13667
13743
+
Lys
TTT
[ENA]
¡û
>W1611052516
MAFX01000056
Euryarchaeota
Methanohalophilus sp. DAL1 [MAFX]
22152
22228
+
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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