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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182344 (102 seq.)
>W1711414024
MGXK01000137
Gammaproteobacteria
Gammaproteobacteria bacterium RBG_16_51_14 [MGXK]
51132
51208
+
Arg
ACG
[ENA]
¡û
>C171071275
CP018005
Gammaproteobacteria
Coxiella burnetii RSA439 [CP018005]
953888
953964
+
Arg
ACG
-
¡û
>C171073895
CP018150
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [CP018150]
755869
755793
-
Arg
ACG
-
¡û
>C171110905
CP020616
Gammaproteobacteria
Coxiella burnetii RSA 439 [CP020616]
953882
953958
+
Arg
ACG
-
¡û
>C171127851
HG825990
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [HG825990]
980341
980417
+
Arg
ACG
-
¡û
>W131249942
CAUE01000072
Gammaproteobacteria
Coxiella burnetii Z3055 [CAUE]
168
92
-
Arg
ACG
[ENA]
¡û
>W131251119
CAVF010000012
Gammaproteobacteria
Coxiella burnetii Cb175_Guyana [CAVF]
256402
256478
+
Arg
ACG
[ENA]
¡û
>C005223
AE016828
Gammaproteobacteria
Coxiella burnetii RSA 493 [AE016828]
980120
980196
+
Arg
ACG
[Ensembl]
¡û
>w024149
AAYJ01000006
Gammaproteobacteria
Coxiella burnetii RSA 334 [AAYJ]
62772
62850
+
Arg
ACG
[ENA]
¡û
>w020064
AAUP01000002
Gammaproteobacteria
Coxiella burnetii 'MSU Goat Q177' [AAUP]
59089
59011
-
Arg
ACG
[ENA]
¡û
>w016774
AAQO01000031
Gammaproteobacteria
Coxiella burnetii RSA 331 [AAQO]
9849
9927
+
Arg
ACG
[ENA]
¡û
>w016626
AAQI01000003
Gammaproteobacteria
Coxiella burnetii Dugway 7E9-12 [AAQI] Dugway 7E9-12 [AAQI]
266260
266338
+
Arg
ACG
[ENA]
¡û
>W141027262
AKYP01000248
Gammaproteobacteria
Coxiella burnetii cb109 [AKYP]
168
92
-
Arg
ACG
[ENA]
¡û
>WENV180697940
ODDE01012500
[ODDE] human metagenome; G_DNA_Supragingival plaque
1262
1338
+
Arg
ACG
[ENA]
¢þ
>WENV180722158
ODGL01116076
[ODGL] human metagenome; G_DNA_Subgingival plaque
160
84
-
Arg
ACG
[ENA]
¢þ
>WENV180728012
ODGU01019822
[ODGU] human metagenome; G_DNA_Supragingival plaque
155
79
-
Arg
ACG
[ENA]
¢þ
>WENV180734344
ODGZ01006178
[ODGZ] human metagenome; G_DNA_Supragingival plaque
274
198
-
Arg
ACG
[ENA]
¢þ
>WENV180734345
ODGZ01006178
[ODGZ] human metagenome; G_DNA_Supragingival plaque
169
93
-
Arg
ACG
[ENA]
¢þ
>WENV180736307
ODHB01021619
[ODHB] human metagenome; G_DNA_Supragingival plaque
87
163
+
Arg
ACG
[ENA]
¢þ
>WENV180738852
ODHD01000815
[ODHD] human metagenome; G_DNA_Supragingival plaque
13531
13607
+
Arg
ACG
[ENA]
¢þ
>WENV180738853
ODHD01000815
[ODHD] human metagenome; G_DNA_Supragingival plaque
13636
13712
+
Arg
ACG
[ENA]
¢þ
>WENV180738854
ODHD01000815
[ODHD] human metagenome; G_DNA_Supragingival plaque
13741
13817
+
Arg
ACG
[ENA]
¢þ
>WENV180755170
ODHU01024343
[ODHU] human metagenome; G_DNA_Supragingival plaque
591
667
+
Arg
ACG
[ENA]
¢þ
>WENV180797356
ODJB01050002
[ODJB] human metagenome; G_DNA_Supragingival plaque
222
298
+
Arg
ACG
[ENA]
¢þ
>WENV180801820
ODJD01207552
[ODJD] human metagenome; G_DNA_Supragingival plaque
160
84
-
Arg
ACG
[ENA]
¢þ
>WENV180924621
ODTK01009430
[ODTK] human metagenome; G_DNA_Supragingival plaque
3030
3106
+
Arg
ACG
[ENA]
¢þ
>WENV180928287
ODTM01029154
[ODTM] human metagenome; G_DNA_Supragingival plaque
267
343
+
Arg
ACG
[ENA]
¢þ
>WENV180938502
ODTX01002470
[ODTX] human metagenome; G_DNA_Supragingival plaque
9155
9079
-
Arg
ACG
[ENA]
¢þ
>WENV180939117
ODTX01015699
[ODTX] human metagenome; G_DNA_Supragingival plaque
551
627
+
Arg
ACG
[ENA]
¢þ
>WENV180939118
ODTX01015699
[ODTX] human metagenome; G_DNA_Supragingival plaque
656
732
+
Arg
ACG
[ENA]
¢þ
>WENV180939119
ODTX01015699
[ODTX] human metagenome; G_DNA_Supragingival plaque
761
837
+
Arg
ACG
[ENA]
¢þ
>WENV180964465
ODUO01003059
[ODUO] human metagenome; G_DNA_Supragingival plaque
4802
4878
+
Arg
ACG
[ENA]
¢þ
>WENV180973806
ODUW01020447
[ODUW] human metagenome; G_DNA_Supragingival plaque
1243
1319
+
Arg
ACG
[ENA]
¢þ
>WENV180973807
ODUW01020447
[ODUW] human metagenome; G_DNA_Supragingival plaque
1348
1424
+
Arg
ACG
[ENA]
¢þ
>WENV180973808
ODUW01020447
[ODUW] human metagenome; G_DNA_Supragingival plaque
1453
1529
+
Arg
ACG
[ENA]
¢þ
>WENV180974081
ODUW01057659
[ODUW] human metagenome; G_DNA_Supragingival plaque
150
74
-
Arg
ACG
[ENA]
¢þ
>WENV180987718
ODVK01093543
[ODVK] human metagenome; G_DNA_Supragingival plaque
160
84
-
Arg
ACG
[ENA]
¢þ
>WENV180999802
ODVT01071638
[ODVT] human metagenome; G_DNA_Buccal mucosa
410
486
+
Arg
ACG
[ENA]
¢þ
>WENV181067967
ODZI01081912
[ODZI] human metagenome; G_DNA_Supragingival plaque
159
83
-
Arg
ACG
[ENA]
¢þ
>WENV181092270
OEBC01388954
[OEBC] human metagenome; G_DNA_Supragingival plaque
160
84
-
Arg
ACG
[ENA]
¢þ
>WENV181108249
OEEI01167077
[OEEI] human metagenome; G_DNA_Supragingival plaque
160
84
-
Arg
ACG
[ENA]
¢þ
>WENV181146056
OEHQ01000632
[OEHQ] human metagenome; G_DNA_Supragingival plaque
160
84
-
Arg
ACG
[ENA]
¢þ
>WENV181156872
OEIE01178712
[OEIE] human metagenome; G_DNA_Supragingival plaque
160
84
-
Arg
ACG
[ENA]
¢þ
>WENV181159374
OEIH01205290
[OEIH] human metagenome; G_DNA_Supragingival plaque
77
1
-
Arg
ACG
[ENA]
¢þ
>WENV181179001
OEJT01000914
[OEJT] human metagenome; G_DNA_Supragingival plaque
13093
13169
+
Arg
ACG
[ENA]
¢þ
>WENV181179002
OEJT01000914
[OEJT] human metagenome; G_DNA_Supragingival plaque
13198
13274
+
Arg
ACG
[ENA]
¢þ
>WENV181181080
OEJU01005085
[OEJU] human metagenome; G_DNA_Supragingival plaque
493
569
+
Arg
ACG
[ENA]
¢þ
>WENV181181081
OEJU01005085
[OEJU] human metagenome; G_DNA_Supragingival plaque
598
674
+
Arg
ACG
[ENA]
¢þ
>C08003029
CP000733
Gammaproteobacteria
Coxiella burnetii Dugway 5J108-111 [CP000733]
989053
988980
-
Arg
ACG
[Ensembl]
¡û
>C08003069
CP000890
Gammaproteobacteria
Coxiella burnetii RSA 331 [CP000890]
803909
803836
-
Arg
ACG
[Ensembl]
¡û
>W141254776
CBTH010000004
Gammaproteobacteria
Coxiella burnetii Cb185 [CBTH]
16297
16373
+
Arg
ACG
[ENA]
¡û
>W141260666
CCAH010000011
Gammaproteobacteria
Coxiella burnetii [CCAH]
307378
307454
+
Arg
ACG
[ENA]
¡û
>W141260709
CCAI010000013
Gammaproteobacteria
Coxiella burnetii [CCAI]
229979
230055
+
Arg
ACG
[ENA]
¡û
>W141260751
CCAJ010000028
Gammaproteobacteria
Coxiella burnetii [CCAJ]
109904
109980
+
Arg
ACG
[ENA]
¡û
>W141260784
CCAK010000057
Gammaproteobacteria
Coxiella burnetii [CCAK]
131
55
-
Arg
ACG
[ENA]
¡û
>W141260843
CCAL010000011
Gammaproteobacteria
Coxiella burnetii [CCAL]
308312
308388
+
Arg
ACG
[ENA]
¡û
>W141260886
CCAM010000036
Gammaproteobacteria
Coxiella burnetii [CCAM]
10161
10237
+
Arg
ACG
[ENA]
¡û
>W141267612
CCNR01000044
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCNR]
5863
5787
-
Arg
ACG
[ENA]
¡û
>WENV170928109
MDTG01128181
[MDTG] marine metagenome; seawater
106
30
-
Arg
ACG
[ENA]
¢þ
>C191091547
CP032542
Gammaproteobacteria
Coxiella burnetii 2014-PE-15890 [CP032542]
1623968
1624044
+
Arg
ACG
-
¡û
>C191134926
CP035112
Gammaproteobacteria
Coxiella burnetii nine mile phase II [CP035112]
1238554
1238630
+
Arg
ACG
-
¡û
>C191174662
CP040059
Gammaproteobacteria
Coxiella burnetii RSA439 [CP040059]
953749
953825
+
Arg
ACG
-
¡û
>C191209064
LR134365
Gammaproteobacteria
Cardiobacterium hominis NCTC10426 [LR134365]
1136198
1136122
-
Arg
ACG
-
¡û
>C191209065
LR134365
Gammaproteobacteria
Cardiobacterium hominis NCTC10426 [LR134365]
1136093
1136017
-
Arg
ACG
-
¡û
>W141810535
JPVV01000020
Gammaproteobacteria
Coxiella burnetii [JPVV]
26582
26506
-
Arg
ACG
[ENA]
¡û
>C09103006
CP001019
Gammaproteobacteria
Coxiella burnetii CbuG_Q212 [CP001019]
943727
943651
-
Arg
ACG
[Ensembl]
¡û
>C09103047
CP001020
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 [CP001020]
755876
755800
-
Arg
ACG
[Ensembl]
¡û
>W1910725971
MGOZ01000041
Gammaproteobacteria
Coxiella sp. RIFCSPHIGHO2_12_FULL_42_15 [MGOZ]
16897
16821
-
Arg
ACG
[ENA]
¡û
>W1910729436
MGYO01000003
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_42_9 [MGYO]
59067
58991
-
Arg
ACG
[ENA]
¡û
>W1911118962
NOLM01000017
Gammaproteobacteria
Coxiella burnetii Dugway 7E65-68 [NOLM]
34956
34880
-
Arg
ACG
[ENA]
¡û
>W1911119004
NOLN01000016
Gammaproteobacteria
Coxiella burnetii Dugway 7D77-80 [NOLN]
34625
34549
-
Arg
ACG
[ENA]
¡û
>W1911119050
NOLO01000008
Gammaproteobacteria
Coxiella burnetii Turkey RSA315 [NOLO]
309467
309543
+
Arg
ACG
[ENA]
¡û
>W1911119088
NOLP01000028
Gammaproteobacteria
Coxiella burnetii Ko Q229 [NOLP]
5947
5871
-
Arg
ACG
[ENA]
¡û
>W1911119134
NOLQ01000008
Gammaproteobacteria
Coxiella burnetii Dyer RSA345 [NOLQ]
309466
309542
+
Arg
ACG
[ENA]
¡û
>W1911119176
NOLR01000011
Gammaproteobacteria
Coxiella burnetii Idaho Goat Q195 [NOLR]
307261
307337
+
Arg
ACG
[ENA]
¡û
>W1911119218
NOLS01000008
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA338 [NOLS]
309521
309597
+
Arg
ACG
[ENA]
¡û
>W1911119260
NOLT01000008
Gammaproteobacteria
Coxiella burnetii Ohio 314 RSA270 [NOLT]
309521
309597
+
Arg
ACG
[ENA]
¡û
>W1911119302
NOLU01000009
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 [NOLU]
293846
293922
+
Arg
ACG
[ENA]
¡û
>W1911119344
NOLV01000008
Gammaproteobacteria
Coxiella burnetii California 33 RSA329 [NOLV]
309521
309597
+
Arg
ACG
[ENA]
¡û
>W1911136643
NOVF01000008
Gammaproteobacteria
Coxiella burnetii California 16 RSA350 clone 2 [NOVF]
309520
309596
+
Arg
ACG
[ENA]
¡û
>W1911136685
NOVG01000009
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA514 [NOVG]
309352
309428
+
Arg
ACG
[ENA]
¡û
>W1911136727
NOVH01000009
Gammaproteobacteria
Coxiella burnetii Nine Mile RSA363 [NOVH]
293476
293552
+
Arg
ACG
[ENA]
¡û
>W1911136769
NOVI01000019
Gammaproteobacteria
Coxiella burnetii M44 RSA461 [NOVI]
40802
40726
-
Arg
ACG
[ENA]
¡û
>W1911136811
NOVJ01000008
Gammaproteobacteria
Coxiella burnetii Australia RSA425 [NOVJ]
309467
309543
+
Arg
ACG
[ENA]
¡û
>W1911136853
NOVK01000008
Gammaproteobacteria
Coxiella burnetii Australia RSA297 [NOVK]
309467
309543
+
Arg
ACG
[ENA]
¡û
>W1810059833
PDLP01000002
Gammaproteobacteria
Coxiella burnetii Leningrad-2 [PDLP]
117600
117676
+
Arg
ACG
[ENA]
¡û
>W1810235666
PPFM01000001
Gammaproteobacteria
Coxiella burnetii Q559 [PPFM]
307250
307326
+
Arg
ACG
[ENA]
¡û
>W1810235710
PPFN01000001
Gammaproteobacteria
Coxiella burnetii Q556 [PPFN]
40455
40379
-
Arg
ACG
[ENA]
¡û
>W1810235750
PPFO01000001
Gammaproteobacteria
Coxiella burnetii Q545 [PPFO]
307251
307327
+
Arg
ACG
[ENA]
¡û
>W1810235819
PPFP01000060
Gammaproteobacteria
Coxiella burnetii Q540 [PPFP]
10403
10479
+
Arg
ACG
[ENA]
¡û
>W1810235834
PPFQ01000001
Gammaproteobacteria
Coxiella burnetii Q532 [PPFQ]
307251
307327
+
Arg
ACG
[ENA]
¡û
>W1810235887
PPFR01000007
Gammaproteobacteria
Coxiella burnetii Cb3506 [PPFR]
40423
40347
-
Arg
ACG
[ENA]
¡û
>C151077718
CP011126
Gammaproteobacteria
Candidatus Coxiella mudrowiae CRt [CP011126]
1020605
1020529
-
Arg
ACG
[Ensembl]
¡û
>C151102377
LK937696
Gammaproteobacteria
Coxiella burnetii Z3055 [LK937696]
980209
980285
+
Arg
ACG
-
¡û
>W1510060768
CCXO01000003
Gammaproteobacteria
Coxiella burnetii CbuK_Q154 Cb196_Saudi_Arabia [CCXO]
195533
195457
-
Arg
ACG
[ENA]
¡û
>W1510061132
CCYB01000044
Gammaproteobacteria
Coxiella burnetii RSA 493 [CCYB]
5863
5787
-
Arg
ACG
[ENA]
¡û
>W1510064631
CDBG01000001
Gammaproteobacteria
Coxiella burnetii RSA 493 Cb171_QLYMPHOMA [CDBG]
1046480
1046556
+
Arg
ACG
[ENA]
¡û
>W1511555125
JZWL01000001
Gammaproteobacteria
Coxiella burnetii NL-Limburg [JZWL]
749348
749272
-
Arg
ACG
[ENA]
¡û
>C161017367
CP007555
Gammaproteobacteria
Coxiella burnetii str. Namibia [CP007555]
753325
753249
-
Arg
ACG
[Ensembl]
¡û
>C161059053
CP013667
Gammaproteobacteria
Coxiella burnetii 3262 [CP013667]
1624082
1624158
+
Arg
ACG
-
¡û
>C161071918
CP014354
Gammaproteobacteria
Coxiella burnetii 3345937 [CP014354]
1533188
1533264
+
Arg
ACG
-
¡û
>WENV081577
ABEF01051391
Marine planktonic communities from Hawaii Ocean Times Series Station (HOT/ALOHA)
1899
1823
-
Arg
ACG
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK