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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182365 (124 seq.)
>W1710785740
LJIC01000168
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
1972
2048
+
Arg
TCG
[ENA]
¡û
>W1710802993
LJYF01000034
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
359970
360046
+
Arg
TCG
[ENA]
¡û
>W1710803023
LJYG01000097
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
116959
116883
-
Arg
TCG
[ENA]
¡û
>W1710877771
LMQJ01000065
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
9148
9072
-
Arg
TCG
[ENA]
¡û
>W1710892771
LNEC01000017
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
12316
12392
+
Arg
TCG
[ENA]
¡û
>W1711073005
LSIC01000146
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
48470
48394
-
Arg
TCG
[ENA]
¡û
>W1711124814
LUKO01000177
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
4170
4094
-
Arg
TCG
[ENA]
¡û
>W1711138858
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
556931
557007
+
Arg
TCG
[ENA]
¡û
>W1711180117
LWIG01000014
Alphaproteobacteria
Bradyrhizobium sacchari BR10280 [LWIG]
398343
398267
-
Arg
TCG
[ENA]
¡û
>W1711193156
LWUI01000031
Alphaproteobacteria
Bradyrhizobium elkanii [LWUI]
132097
132021
-
Arg
TCG
[ENA]
¡û
>W1711206736
LXEM01000015
Alphaproteobacteria
Bradyrhizobium elkanii [LXEM]
132097
132021
-
Arg
TCG
[ENA]
¡û
>W1711783515
MVOD01000016
Alphaproteobacteria
Rhodopseudomonas palustris [MVOD]
212472
212548
+
Arg
TCG
[ENA]
¡û
>W1711928972
NAFL01000286
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
234817
234893
+
Arg
TCG
[ENA]
¡û
>W1712049590
NFUH01000030
Alphaproteobacteria
Bradyrhizobium guangdongense [NFUH]
12804
12728
-
Arg
TCG
[ENA]
¡û
>C171021098
CP013127
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [CP013127]
4292533
4292609
+
Arg
TCG
-
¡û
>C171064673
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
4779925
4780001
+
Arg
TCG
-
¡û
>W131164991
ARBF01000080
Alphaproteobacteria
Bradyrhizobium sp. WSM2793 WSM2793 [ARBF]
284194
284270
+
Arg
TCG
[ENA]
¡û
>W131170237
ARFJ01000007
Alphaproteobacteria
Bradyrhizobium japonicum USDA 124 [ARFJ]
317710
317786
+
Arg
TCG
[ENA]
¡û
>W131217332
ATWP01000019
Alphaproteobacteria
Bradyrhizobium japonicum is5 [ATWP]
79832
79908
+
Arg
TCG
[ENA]
¡û
>W131228703
AUGD01000020
Alphaproteobacteria
Bradyrhizobium japonicum in8p8 [AUGD]
9543
9467
-
Arg
TCG
[ENA]
¡û
>C003072
BA000040
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 USDA110 [BA000040]
5872973
5872897
-
Arg
TCG
[Ensembl]
¡û
>C018940
CP000283
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [CP000283]
3446452
3446528
+
Arg
TCG
[Ensembl]
¡û
>C018991
BX571963
Alphaproteobacteria
Rhodopseudomonas palustris [BX571963]
3591387
3591463
+
Arg
TCG
[Ensembl]
¡û
>C019064
CP000250
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [CP000250]
2715537
2715461
-
Arg
TCG
[Ensembl]
¡û
>W141001303
ADOU01000072
Alphaproteobacteria
Bradyrhizobium diazoefficiens SEMIA 5080 [ADOU]
159414
159338
-
Arg
TCG
[ENA]
¡û
>WENV180344487
OBLL01007992
[OBLL] soil metagenome; soil
445
521
+
Arg
TCG
[ENA]
¢þ
>W141041850
AMCQ01000819
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [AMCQ]
713
637
-
Arg
TCG
[ENA]
¡û
>w001286
AAAF01000011
Alphaproteobacteria
Rhodopseudomonas palustris [AAAF]
100120
100198
+
Arg
TCG
[ENA]
¡û
>WENV181166595
OEIU01000742
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
23040
23116
+
Arg
TCG
[ENA]
¢þ
>WENV181311976
OFJB01028702
[OFJB] sludge metagenome; sludge
226
302
+
Arg
TCG
[ENA]
¢þ
>W141150119
AXAD01000003
Alphaproteobacteria
Bradyrhizobium arachidis USDA 3384 [AXAD]
834305
834229
-
Arg
TCG
[ENA]
¡û
>W141150256
AXAG01000003
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
345978
346054
+
Arg
TCG
[ENA]
¡û
>W141151044
AXAT01000054
Alphaproteobacteria
Bradyrhizobium japonicum USDA 135 [AXAT]
22584
22660
+
Arg
TCG
[ENA]
¡û
>W141151086
AXAU01000001
Alphaproteobacteria
Bradyrhizobium murdochi WSM1741 [AXAU]
16177
16101
-
Arg
TCG
[ENA]
¡û
>W141151140
AXAV01000011
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
165819
165743
-
Arg
TCG
[ENA]
¡û
>W141151220
AXAX01000002
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 122 [AXAX]
145988
146064
+
Arg
TCG
[ENA]
¡û
>W141151310
AXAY01000050
Alphaproteobacteria
Bradyrhizobium sp. WSM3983 [AXAY]
16691
16615
-
Arg
TCG
[ENA]
¡û
>W141151357
AXAZ01000116
Alphaproteobacteria
Bradyrhizobium sp. WSM1743 [AXAZ]
13204
13280
+
Arg
TCG
[ENA]
¡û
>W141151460
AXBC01000003
Alphaproteobacteria
Bradyrhizobium genosp. SA-4 SA-4 str. CB756 [AXBC]
998277
998353
+
Arg
TCG
[ENA]
¡û
>W141168848
AXVG01000014
Alphaproteobacteria
Bradyrhizobium japonicum 22 [AXVG]
270873
270797
-
Arg
TCG
[ENA]
¡û
>W141223326
BADD01000609
Alphaproteobacteria
Rhodopseudomonas sp. B29 [BADD]
8948
8872
-
Arg
TCG
[ENA]
¡û
>W141233904
BAWE01000005
Alphaproteobacteria
Bradyrhizobium sp. DOA9 [BAWE]
364126
364050
-
Arg
TCG
[ENA]
¡û
>WENV183724551
PJQE01027596
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
363
439
+
Arg
TCG
[ENA]
¢þ
>WENV170709422
LNFM01000330
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
12312
12388
+
Arg
TCG
[ENA]
¢þ
>C181041857
CP019966
Alphaproteobacteria
Rhodopseudomonas palustris PS3 [CP019966]
3504513
3504589
+
Arg
TCG
-
¡û
>C181041903
CP019967
Alphaproteobacteria
Rhodopseudomonas palustris YSC3 [CP019967]
3544905
3544981
+
Arg
TCG
-
¡û
>C181181575
CP029603
Alphaproteobacteria
Bradyrhizobium diazoefficiens XF7 [CP029603]
6015530
6015454
-
Arg
TCG
-
¡û
>C181203851
LS398110
Alphaproteobacteria
Bradyrhizobium vignae [LS398110]
3483787
3483863
+
Arg
TCG
-
¡û
>C191019709
CP022219
Alphaproteobacteria
Bradyrhizobium guangxiense CCBAU 53363 [CP022219]
3909347
3909271
-
Arg
TCG
-
¡û
>C191019733
CP022221
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51778 [CP022221]
4254827
4254903
+
Arg
TCG
-
¡û
>C191071715
CP030053
Alphaproteobacteria
Bradyrhizobium guangzhouense CCBAU 51670 [CP030053]
3082176
3082252
+
Arg
TCG
-
¡û
>C191092042
CP032617
Alphaproteobacteria
Bradyrhizobium diazoefficiens 110spc4 [CP032617]
5808615
5808539
-
Arg
TCG
-
¡û
>W09103849
AAKZ01000019
Alphaproteobacteria
Rhodopseudomonas palustris BisB5 [AAKZ]
39218
39294
+
Arg
TCG
[ENA]
¡û
>W09104371
AALQ01000003
Alphaproteobacteria
Rhodopseudomonas palustris HaA2 [AALQ]
833036
833112
+
Arg
TCG
[ENA]
¡û
>W09107575
ABJR01000001
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [ABJR]
1828117
1828193
+
Arg
TCG
[ENA]
¡û
>W1910183069
BJNK01000005
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
322088
322012
-
Arg
TCG
[ENA]
¡û
>W1910598242
LAXE01000001
Alphaproteobacteria
Bradyrhizobium sp. SUTN9-2 [LAXE]
3732574
3732650
+
Arg
TCG
[ENA]
¡û
>W1910598972
LBJC01000081
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 53390 [LBJC]
12853
12777
-
Arg
TCG
[ENA]
¡û
>W1910598979
LBJM01000004
Alphaproteobacteria
Bradyrhizobium zhanjiangense CCBAU 51787 [LBJM]
14679
14755
+
Arg
TCG
[ENA]
¡û
>W1910599043
LBJQ01000081
Alphaproteobacteria
Bradyrhizobium nanningense CCBAU 51757 [LBJQ]
197369
197445
+
Arg
TCG
[ENA]
¡û
>W1910840274
MZXW01000022
Alphaproteobacteria
Bradyrhizobium betae Opo-243 [MZXW]
346946
346870
-
Arg
TCG
[ENA]
¡û
>W1911219148
NRSI01000004
Alphaproteobacteria
Rhodopseudomonas palustris DSM 126 [NRSI]
353659
353583
-
Arg
TCG
[ENA]
¡û
>W1911409799
NWTE01000012
Alphaproteobacteria
Bradyrhizobium diazoefficiens Y21 [NWTE]
119449
119373
-
Arg
TCG
[ENA]
¡û
>W1911409992
NWTI01000002
Alphaproteobacteria
Bradyrhizobium sp. Y36 [NWTI]
478795
478871
+
Arg
TCG
[ENA]
¡û
>W1911629610
PSRT01000089
Alphaproteobacteria
Bradyrhizobium genosp. SA-3 SA-3 Rp7b [PSRT]
25274
25350
+
Arg
TCG
[ENA]
¡û
>W1911760580
QWVU01000043
Alphaproteobacteria
Rhodopseudomonas palustris R1 [QWVU]
37645
37569
-
Arg
TCG
[ENA]
¡û
>W1911809173
QYYC01000035
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.37 [QYYC]
48951
48875
-
Arg
TCG
[ENA]
¡û
>W1911809245
QYYD01000042
Alphaproteobacteria
Rhodopseudomonas palustris 2.1.18 [QYYD]
6138
6062
-
Arg
TCG
[ENA]
¡û
>W1911817868
QZMV01000005
Alphaproteobacteria
Bradyrhizobium sp. LVM 105 [QZMV]
399916
399992
+
Arg
TCG
[ENA]
¡û
>W1810104421
PGVG01000012
Alphaproteobacteria
Bradyrhizobium forestalis INPA54B [PGVG]
21637
21713
+
Arg
TCG
[ENA]
¡û
>W1810289850
PTFE01000002
Alphaproteobacteria
Bradyrhizobium sp. AC87j1 [PTFE]
27437
27361
-
Arg
TCG
[ENA]
¡û
>W1810679426
QKQS01000013
Alphaproteobacteria
Rhodopseudomonas palustris XCP [QKQS]
485850
485926
+
Arg
TCG
[ENA]
¡û
>W1810787510
QRDT01000012
Alphaproteobacteria
Rhodopseudomonas pentothenatexigens JA575 [QRDT]
142895
142971
+
Arg
TCG
[ENA]
¡û
>W1810884407
QUMP01000012
Alphaproteobacteria
Rhodopseudomonas thermotolerans JA576,NBRC 108863,KCTC 15144 [QUMP]
142895
142971
+
Arg
TCG
[ENA]
¡û
>C151066537
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
4577543
4577619
+
Arg
TCG
[Ensembl]
¡û
>W10112809
ADFI01000004
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
232908
232984
+
Arg
TCG
[ENA]
¡û
>C10110752
CP001096
Alphaproteobacteria
Rhodopseudomonas palustris TIE-1 [CP001096]
3843582
3843658
+
Arg
TCG
[Ensembl]
¡û
>W1510973724
JGCL01000005
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
157311
157387
+
Arg
TCG
[ENA]
¡û
>W11116036
ADFI01000004
Alphaproteobacteria
Rhodopseudomonas palustris DX-1 [ADFI]
232908
232984
+
Arg
TCG
[ENA]
¡û
>C11118775
CP002418
Alphaproteobacteria
Rhodopseudomonas palustris [CP002418]
2415600
2415524
-
Arg
TCG
[Ensembl]
¡û
>W1511533271
JYMR01000020
Alphaproteobacteria
Bradyrhizobium sp. LTSP849 [JYMR]
74441
74365
-
Arg
TCG
[ENA]
¡û
>W1511533337
JYMS01000049
Alphaproteobacteria
Bradyrhizobium sp. LTSP857 [JYMS]
241202
241126
-
Arg
TCG
[ENA]
¡û
>W1511625948
LCZM01000218
Alphaproteobacteria
Rhodopseudomonas palustris 42OL [LCZM]
90144
90220
+
Arg
TCG
[ENA]
¡û
>W1511706697
LGUJ01000011
Alphaproteobacteria
Bradyrhizobium diazoefficiens Is-1 [LGUJ]
224667
224743
+
Arg
TCG
[ENA]
¡û
>C121000467
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
4554460
4554536
+
Arg
TCG
[Ensembl]
¡û
>C161001037
AP014685
Alphaproteobacteria
Bradyrhizobium diazoefficiens NK6 [AP014685]
9743019
9742943
-
Arg
TCG
-
¡û
>C161017375
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
1545118
1545194
+
Arg
TCG
[Ensembl]
¡û
>C161034250
CP011360
Alphaproteobacteria
Bradyrhizobium diazoefficiens USDA 110 [CP011360]
5192636
5192560
-
Arg
TCG
-
¡û
>C161062543
CP013949
Alphaproteobacteria
Bradyrhizobium sp. CCGE-LA001 [CP013949]
4810950
4810874
-
Arg
TCG
[Ensembl]
¡û
>C161107923
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
4265445
4265521
+
Arg
TCG
-
¡û
>W121065265
AJPW01000471
Alphaproteobacteria
Bradyrhizobium elkanii CCBAU 43297 [AJPW]
1842
1918
+
Arg
TCG
[ENA]
¡û
>W121065385
AJPZ01000191
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
14858
14934
+
Arg
TCG
[ENA]
¡û
>W121065454
AJQA01000321
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
21806
21882
+
Arg
TCG
[ENA]
¡û
>W121065552
AJQC01000635
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 05525 [AJQC]
417
493
+
Arg
TCG
[ENA]
¡û
>W121065578
AJQD01000290
Alphaproteobacteria
Bradyrhizobium liaoningense CCBAU 83689 [AJQD]
418
494
+
Arg
TCG
[ENA]
¡û
>W121065634
AJQE01000236
Alphaproteobacteria
Bradyrhizobium sp. CCBAU 43298 [AJQE]
14619
14695
+
Arg
TCG
[ENA]
¡û
>W121065827
AJQI01000317
Alphaproteobacteria
Bradyrhizobium diazoefficiens CCBAU 41267 [AJQI]
6308
6384
+
Arg
TCG
[ENA]
¡û
>W121065876
AJQJ01000279
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 05623 [AJQJ]
10699
10623
-
Arg
TCG
[ENA]
¡û
>W121065921
AJQK01000229
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 25021 [AJQK]
28800
28724
-
Arg
TCG
[ENA]
¡û
>W121065972
AJQL01000292
Alphaproteobacteria
Bradyrhizobium yuanmingense CCBAU 35157 [AJQL]
14591
14667
+
Arg
TCG
[ENA]
¡û
>W121127164
CAFJ01000164
Alphaproteobacteria
Bradyrhizobium sp. STM 3809 [CAFJ]
4859
4783
-
Arg
TCG
[ENA]
¡û
>W1610514446
FMAE01000008
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
249941
250017
+
Arg
TCG
[ENA]
¡û
>W1610514607
FMAI01000007
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
152839
152763
-
Arg
TCG
[ENA]
¡û
>W1610550290
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
2461185
2461261
+
Arg
TCG
[ENA]
¡û
>W1610649546
LJIC01000168
Alphaproteobacteria
Rhodopseudomonas sp. AAP120 [LJIC]
1972
2048
+
Arg
TCG
[ENA]
¡û
>W1610666850
LJYF01000034
Alphaproteobacteria
Bradyrhizobium yuanmingense [LJYF]
359970
360046
+
Arg
TCG
[ENA]
¡û
>W1610666880
LJYG01000097
Alphaproteobacteria
Bradyrhizobium manausense [LJYG]
116959
116883
-
Arg
TCG
[ENA]
¡û
>W1610740117
LMQJ01000065
Alphaproteobacteria
Bradyrhizobium sp. Leaf396 [LMQJ]
9148
9072
-
Arg
TCG
[ENA]
¡û
>W1610753037
LNEC01000017
Alphaproteobacteria
Bradyrhizobiaceae bacterium Ga0074131 [LNEC]
12316
12392
+
Arg
TCG
[ENA]
¡û
>W1610912265
LSIC01000146
Alphaproteobacteria
Bradyrhizobium sp. CCH5-F6 [LSIC]
48470
48394
-
Arg
TCG
[ENA]
¡û
>W1610935786
LUKO01000177
Alphaproteobacteria
Bradyrhizobium liaoningense [LUKO]
4170
4094
-
Arg
TCG
[ENA]
¡û
>W1610949866
LVEM01000001
Alphaproteobacteria
Bradyrhizobium stylosanthis [LVEM]
556931
557007
+
Arg
TCG
[ENA]
¡û
>W1710500136
FMAE01000008
Alphaproteobacteria
Bradyrhizobium yuanmingense [FMAE]
249941
250017
+
Arg
TCG
[ENA]
¡û
>W1710500297
FMAI01000007
Alphaproteobacteria
Bradyrhizobium shewense err11 [FMAI]
152839
152763
-
Arg
TCG
[ENA]
¡û
>W1710516761
FNCU01000018
Alphaproteobacteria
Bradyrhizobium sp. Rc2d [FNCU]
157128
157052
-
Arg
TCG
[ENA]
¡û
>W1710546021
FOBX01000010
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
260210
260134
-
Arg
TCG
[ENA]
¡û
>W1710548421
FODT01000008
Alphaproteobacteria
Rhodopseudomonas pseudopalustris [FODT]
70924
71000
+
Arg
TCG
[ENA]
¡û
>W1710564291
FOQJ01000018
Alphaproteobacteria
Bradyrhizobium sp. cf659 [FOQJ]
20105
20181
+
Arg
TCG
[ENA]
¡û
>W1710569820
FOUS01000011
Alphaproteobacteria
Bradyrhizobium sp. Rc3b [FOUS]
109555
109479
-
Arg
TCG
[ENA]
¡û
>W1710571305
FOVU01000004
Alphaproteobacteria
Bradyrhizobium sp. Ghvi [FOVU]
417307
417383
+
Arg
TCG
[ENA]
¡û
>W1710578542
FPBQ01000058
Alphaproteobacteria
Bradyrhizobium arachidis [FPBQ]
11344
11420
+
Arg
TCG
[ENA]
¡û
>W1710659016
JXJM01000001
Alphaproteobacteria
Bradyrhizobium sp. DOA1 [JXJM]
2461185
2461261
+
Arg
TCG
[ENA]
¡û
>W1710735618
LGHL01000020
Alphaproteobacteria
Bradyrhizobium sp. NAS80.1 [LGHL]
203
127
-
Arg
TCG
[ENA]
¡û
>W1710735677
LGHM01000026
Alphaproteobacteria
Bradyrhizobium sp. AS23.2 [LGHM]
53966
53890
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
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(or Accession No.)
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(Sample source for ENV)
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Direction
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Decision
Download Sequence
Representative sequence of each cluster
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