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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182373 (32 seq.)
>C171000033
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
3930784
3930865
+
Tyr
GTA
-
¡û
>C171000096
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
3930784
3930865
+
Tyr
GTA
-
¡û
>W131036332
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
2189494
2189413
-
Tyr
GTA
[ENA]
¡û
>W131166656
ARCP01000039
Cyanobacteriota
filamentous cyanobacterium ESFC-1 [ARCP]
12369
12453
+
Tyr
GTA
[ENA]
¡û
>C025557
CP000393
Actinomycetota
Trichodesmium erythraeum [CP000393]
5741481
5741562
+
Tyr
GTA
[Ensembl]
¡û
>w021630
AAVU01000020
Cyanobacteriota
Lyngbya sp. PCC 8106 [AAVU]
71879
71793
-
Tyr
GTA
[ENA]
¡û
>W141038221
ALVK01000018
Cyanobacteriota
Pseudanabaena sp. PCC 6802 [ALVK]
1299244
1299328
+
Tyr
GTA
[ENA]
¡û
>W141038655
ALWB01000008
Cyanobacteriota
Pseudanabaena biceps PCC 7429 [ALWB]
5759
5675
-
Tyr
GTA
[ENA]
¡û
>W141091966
AUZM01000106
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
758
674
-
Tyr
GTA
[ENA]
¡û
>W08008925
ABLR01000003
Cyanobacteriota
Rippkaea orientalis PCC 8801 [ABLR]
174456
174540
+
Tyr
GTA
[ENA]
¡û
>W08011367
ABVE01000009
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [ABVE]
214134
214053
-
Tyr
GTA
[ENA]
¡û
>W08011498
ABVI01000005
Cyanobacteriota
Rippkaea orientalis PCC 8802 [ABVI]
94992
94911
-
Tyr
GTA
[ENA]
¡û
>WENV170996256
MWWF01195033
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
384
301
-
Tyr
GTA
[ENA]
¢þ
>W09100638
AABK04000001
Cyanobacteriota
Trichodesmium erythraeum IMS101 [AABK]
841842
841761
-
Tyr
GTA
[ENA]
¡û
>C181004858
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
3004963
3004882
-
Tyr
GTA
-
¡û
>C191000312
AP017560
Cyanobacteriota
Pseudanabaena sp. ABRG5-3 [AP017560]
4063886
4063805
-
Tyr
GTA
-
¡û
>W1910872411
NDHW01000037
Cyanobacteriota
Pseudanabaena sp. SR411 [NDHW]
132013
132094
+
Tyr
GTA
[ENA]
¡û
>C09103635
CP001287
Cyanobacteriota
Rippkaea orientalis PCC 8801 [CP001287]
2701015
2700931
-
Tyr
GTA
[Ensembl]
¡û
>W1810366420
PVWK01000140
Cyanobacteriota
Stenomitos frigidus ULC18 [PVWK]
84049
84135
+
Tyr
GTA
[ENA]
¡û
>C10104714
CP001701
Cyanobacteriota
Rippkaea orientalis [CP001701]
3560510
3560594
+
Tyr
GTA
[Ensembl]
¡û
>C11106710
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1120441
1120525
+
Tyr
GTA
[Ensembl]
¡û
>C11106754
CP002198
Cyanobacteriota
Gloeothece verrucosa PCC 7822 [CP002198]
1120441
1120525
+
Tyr
GTA
[Ensembl]
¡û
>W1511564140
LADK01008909
Cyanobacteriota
Trichodesmium erythraeum 21-75 [LADK]
3830
3911
+
Tyr
GTA
[ENA]
¡û
>W1511582920
LATL02000302
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
8224
8140
-
Tyr
GTA
[ENA]
¡û
>C161001511
AP014815
Cyanobacteriota
Geminocystis sp. NIES-3708 [AP014815]
3609109
3609028
-
Tyr
GTA
[Ensembl]
¡û
>C161002705
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
172500
172419
-
Tyr
GTA
[Ensembl]
¡û
>W1610057098
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
2810531
2810612
+
Tyr
GTA
[ENA]
¡û
>C131004485
CP003594
Cyanobacteriota
Synechococcus sp. PCC 7502 [CP003594]
3412839
3412923
+
Tyr
GTA
[Ensembl]
¡û
>C131005010
CP003653
Cyanobacteriota
Stanieria cyanosphaera PCC 7437 [CP003653]
2300805
2300889
+
Tyr
GTA
[Ensembl]
¡û
>W1610634129
LIRE01000143
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
168
84
-
Tyr
GTA
[ENA]
¡û
>W1710053797
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
2810531
2810612
+
Tyr
GTA
[ENA]
¡û
>W1710768506
LIRE01000143
Cyanobacteriota
Pseudanabaena sp. 'Roaring Creek' [LIRE]
168
84
-
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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