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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182400 (18 seq.)
>W1710810757
LKHS01000006
Gammaproteobacteria
Vibrio furnissii [LKHS]
4237
4153
-
Leu
CAA
[ENA]
¡û
>C171089278
CP019118
Gammaproteobacteria
Vibrio fluvialis 12605 [CP019118, CP019119]
291360
291444
+
Leu
CAA
-
¡û
>W131203033
ASXS01000007
Gammaproteobacteria
Vibrio fluvialis PG41 [ASXS]
262139
262223
+
Leu
CAA
[ENA]
¡û
>W131203129
ASXT01000003
Gammaproteobacteria
Vibrio fluvialis I21563 [ASXT]
6940
6856
-
Leu
CAA
[ENA]
¡û
>W131205576
ATEV01000029
Gammaproteobacteria
Vibrio paracholerae VCC19 [ATEV]
6622
6538
-
Leu
CAA
[ENA]
¡û
>C181014516
CP014033
Gammaproteobacteria
Vibrio fluvialis FDAARGOS_100 [CP014032, CP014033]
1953057
1953141
+
Leu
CAA
-
¡û
>C191184641
CP040990
Gammaproteobacteria
Vibrio furnissii FDAARGOS_777 [CP040990, CP040991]
40006
39922
-
Leu
CAA
-
¡û
>W1810110775
PHIF01000004
Gammaproteobacteria
Vibrio fluvialis QY27 [PHIF]
261944
262028
+
Leu
CAA
[ENA]
¡û
>SRA1004427
SRR006906.28483
metagenomic water samples (SRP000427)
29
113
+
Leu
CAA
[SRA]
>W10107710
ACZP01000018
Gammaproteobacteria
Vibrio furnissii CIP 102972 [ACZP]
271454
271538
+
Leu
CAA
[ENA]
¡û
>W11110097
ACZP01000018
Gammaproteobacteria
Vibrio furnissii CIP 102972 [ACZP]
271454
271538
+
Leu
CAA
[ENA]
¡û
>W1511403739
JTLJ01000056
Gammaproteobacteria
Vibrio fluvialis ZOR0035 [JTLJ]
6782
6698
-
Leu
CAA
[ENA]
¡û
>C11123424
CP002377
Gammaproteobacteria
Vibrio furnissii NCTC 11218 [CP002377, CP002378]
779008
779092
+
Leu
CAA
[Ensembl]
¡û
>W1511517693
JXXQ01000006
Gammaproteobacteria
Vibrio fluvialis 3663 [JXXQ]
29599
29515
-
Leu
CAA
[ENA]
¡û
>C161065312
CP014035
Gammaproteobacteria
Vibrio fluvialis ATCC 33809 [CP014034, CP014035]
21424
21508
+
Leu
CAA
-
¡û
>W1610077717
BCZR01000007
Gammaproteobacteria
Vibrio fluvialis NBRC 103150 [BCZR]
267920
268004
+
Leu
CAA
[ENA]
¡û
>W1610674812
LKHS01000006
Gammaproteobacteria
Vibrio furnissii [LKHS]
4237
4153
-
Leu
CAA
[ENA]
¡û
>W1710075355
BCZR01000007
Gammaproteobacteria
Vibrio fluvialis NBRC 103150 [BCZR]
267920
268004
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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