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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182407 (34 seq.)
>W1711187547
LWPO01000079
Gammaproteobacteria
Hafnia sp. HMSC23F03 [LWPO]
184
268
+
Leu
TAG
[ENA]
¡û
>W1712109982
NJFP01000003
Gammaproteobacteria
Hafnia alvei [NJFP]
2288079
2287995
-
Leu
TAG
[ENA]
¡û
>WENV180137961
OATP01001991
[OATP] human gut metagenome; faeces
7088
7172
+
Leu
TAG
[ENA]
¢þ
>WENV180143623
OATY01000017
[OATY] human gut metagenome; faeces
118463
118379
-
Leu
TAG
[ENA]
¢þ
>W141350048
JCKH01000009
Gammaproteobacteria
Hafnia alvei FB1 [JCKH]
317456
317372
-
Leu
TAG
[ENA]
¡û
>WENV183521289
OMNU01002852
[OMNU] human gut metagenome; feces
285
201
-
Leu
TAG
[ENA]
¢þ
>C181002184
AP017469
Gammaproteobacteria
Hafnia sp. CBA7124 [AP017469]
1202639
1202555
-
Leu
TAG
-
¡û
>C181055102
CP021971
Gammaproteobacteria
Hafnia alvei CBA7135 [CP021971]
1229683
1229599
-
Leu
TAG
-
¡û
>C191008143
CP004083
Gammaproteobacteria
Enterobacteriaceae bacterium bta3-1 [CP004083]
387317
387233
-
Leu
TAG
-
¡û
>C191152049
CP036514
Gammaproteobacteria
Hafnia alvei PCM_1220 [CP036514]
1260744
1260660
-
Leu
TAG
-
¡û
>W141710494
JMPK01000038
Gammaproteobacteria
Hafnia alvei ATCC 13337 [JMPK]
423
339
-
Leu
TAG
[ENA]
¡û
>W1910211928
FMIQ01000031
Gammaproteobacteria
Hafnia alvei GB001 [FMIQ]
15286
15202
-
Leu
TAG
[ENA]
¡û
>W1911179146
NQMS01000001
Gammaproteobacteria
Hafnia paralvei CITHA-6 [NQMS]
271536
271452
-
Leu
TAG
[ENA]
¡û
>W1911397617
NWFL02000004
Gammaproteobacteria
Hafnia paralvei FDAARGOS_230 [NWFL]
4356195
4356279
+
Leu
TAG
[ENA]
¡û
>W1810032529
BGWW01000002
Gammaproteobacteria
Escherichia coli TUM18717 [BGWW]
243727
243811
+
Leu
TAG
[ENA]
¡û
>W1810758400
QPIR01000134
Gammaproteobacteria
Hafnia paralvei C2 [QPIR]
312
228
-
Leu
TAG
[ENA]
¡û
>W1810758467
QPIS01000136
Gammaproteobacteria
Hafnia paralvei C3 [QPIS]
65501
65585
+
Leu
TAG
[ENA]
¡û
>W1810758524
QPIT01000096
Gammaproteobacteria
Hafnia paralvei C5 [QPIT]
318
234
-
Leu
TAG
[ENA]
¡û
>W1810758586
QPIU01000096
Gammaproteobacteria
Hafnia paralvei C8 [QPIU]
65493
65577
+
Leu
TAG
[ENA]
¡û
>W1810758643
QPIV01000095
Gammaproteobacteria
Hafnia paralvei C9 [QPIV]
517
433
-
Leu
TAG
[ENA]
¡û
>W1810784888
QRAZ01002971
Gammaproteobacteria
Hafnia paralvei C10 [QRAZ]
65532
65616
+
Leu
TAG
[ENA]
¡û
>C151057795
CP009706
Gammaproteobacteria
Hafnia alvei FB1 [CP009706]
1433076
1432992
-
Leu
TAG
[Ensembl]
¡û
>W11113857
ADCU01000001
Gammaproteobacteria
Enterobacteriaceae bacterium 9_2_54FAA [ADCU]
376933
376849
-
Leu
TAG
[ENA]
¡û
>W1511399543
JTET01000015
Gammaproteobacteria
Hafnia alvei DSM 30098 [JTET]
62954
62870
-
Leu
TAG
[ENA]
¡û
>W1511399636
JTEU02000018
Gammaproteobacteria
Hafnia alvei DSM 30099 [JTEU]
44872
44788
-
Leu
TAG
[ENA]
¡û
>W1511474601
JWBZ01000127
Gammaproteobacteria
Hafnia paralvei 1133_RAQU [JWBZ]
161
77
-
Leu
TAG
[ENA]
¡û
>W1511478120
JWGZ01000022
Gammaproteobacteria
Hafnia paralvei GTA-HAF03 [JWGZ]
119412
119496
+
Leu
TAG
[ENA]
¡û
>W1511586427
LAZG01000011
Gammaproteobacteria
Hafnia alvei ATCC 29926 [LAZG]
65950
66034
+
Leu
TAG
[ENA]
¡û
>C161065246
CP014031
Gammaproteobacteria
Hafnia paralvei FDAARGOS_158 [CP014031]
4253191
4253275
+
Leu
TAG
-
¡û
>C161074218
CP014608
Gammaproteobacteria
Obesumbacterium proteus DSM 2777 [CP014608]
2463030
2462946
-
Leu
TAG
-
¡û
>C161086825
CP015379
Gammaproteobacteria
Hafnia alvei HUMV-5920 [CP015379]
316120
316204
+
Leu
TAG
-
¡û
>W121008428
AGCI01000106
Gammaproteobacteria
Hafnia alvei ATCC 51873 [AGCI]
629
545
-
Leu
TAG
[ENA]
¡û
>W1610994678
LXET01000046
Gammaproteobacteria
Hafnia paralvei ATCC 29927 [LXET]
119260
119344
+
Leu
TAG
[ENA]
¡û
>W1610995002
LXEX01000061
Gammaproteobacteria
Obesumbacterium proteus ATCC 12841 [LXEX]
64810
64726
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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