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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182437 (89 seq.)
>W1710785180
LJHQ01000018
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
60591
60675
+
Leu
CAA
[ENA]
¡û
>W1710869615
LMJW01000001
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
1087521
1087437
-
Leu
CAA
[ENA]
¡û
>W1710879513
LMRT01000009
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
262086
262170
+
Leu
CAA
[ENA]
¡û
>W1711072964
LSIB01000163
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
83441
83357
-
Leu
CAA
[ENA]
¡û
>W1711073371
LSIM01000122
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
58101
58185
+
Leu
CAA
[ENA]
¡û
>W1711073416
LSIN01000105
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
11991
11907
-
Leu
CAA
[ENA]
¡û
>W1711169163
LVYV01000001
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
386204
386288
+
Leu
CAA
[ENA]
¡û
>W1711928957
NAFL01000259
Alphaproteobacteria
Bradyrhizobium japonicum [NAFL]
3396
3312
-
Leu
CAA
[ENA]
¡û
>C171057726
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
548995
549079
+
Leu
CAA
-
¡û
>C171064698
CP017637
Alphaproteobacteria
Bradyrhizobium japonicum J5 [CP017637]
1448994
1448910
-
Leu
CAA
-
¡û
>W131226899
AUES01000021
Alphaproteobacteria
Bradyrhizobium sp. URHA0002 [AUES]
98299
98383
+
Leu
CAA
[ENA]
¡û
>W141007432
AGWX01000001
Alphaproteobacteria
Afipia broomeae ATCC 49717 [AGWX]
83039
82955
-
Leu
CAA
[ENA]
¡û
>W141007515
AGWY01000015
Alphaproteobacteria
Afipia clevelandensis ATCC 49720 [AGWY]
135960
135876
-
Leu
CAA
[ENA]
¡û
>WENV180304525
OBJI01102522
[OBJI] soil metagenome; soil
256
172
-
Leu
CAA
[ENA]
¢þ
>WENV180344673
OBLL01106028
[OBLL] soil metagenome; soil
277
193
-
Leu
CAA
[ENA]
¢þ
>WENV180345186
OBLM01099267
[OBLM] soil metagenome; soil
252
168
-
Leu
CAA
[ENA]
¢þ
>WENV180396711
OBPV01067218
[OBPV] marine metagenome; ENVO:00002010
151
67
-
Leu
CAA
[ENA]
¢þ
>WENV180398036
OBPZ01058953
[OBPZ] marine metagenome; ENVO:00002010
163
247
+
Leu
CAA
[ENA]
¢þ
>W141063387
APHQ01000008
Alphaproteobacteria
Afipia sp. OHSU_II-uncloned [APHQ]
70844
70928
+
Leu
CAA
[ENA]
¡û
>W141063729
APJE01000029
Alphaproteobacteria
Afipia sp. OHSU_I-C6 [APJE]
270604
270688
+
Leu
CAA
[ENA]
¡û
>W141063767
APJF01000010
Alphaproteobacteria
Afipia sp. OHSU_I-C4 [APJF]
328762
328846
+
Leu
CAA
[ENA]
¡û
>W141063786
APJG01000003
Alphaproteobacteria
Afipia sp. OHSU_I-uncloned [APJG]
275653
275569
-
Leu
CAA
[ENA]
¡û
>W141063854
APJH01000012
Alphaproteobacteria
Afipia sp. OHSU_II-C2 [APJH]
235940
235856
-
Leu
CAA
[ENA]
¡û
>W141063886
APJI01000006
Alphaproteobacteria
Afipia sp. OHSU_II-C1 [APJI]
328762
328846
+
Leu
CAA
[ENA]
¡û
>W141093586
AVBK01000004
Alphaproteobacteria
Afipia sp. NBIMC_P1-C1 [AVBK]
101608
101692
+
Leu
CAA
[ENA]
¡û
>W141093641
AVBL01000011
Alphaproteobacteria
Afipia sp. NBIMC_P1-C2 [AVBL]
260918
260834
-
Leu
CAA
[ENA]
¡û
>W141093685
AVBM01000004
Alphaproteobacteria
Afipia sp. NBIMC_P1-C3 [AVBM]
287628
287712
+
Leu
CAA
[ENA]
¡û
>WENV181165561
OEIS01034423
[OEIS] soil metagenome; soil
230
314
+
Leu
CAA
[ENA]
¢þ
>W141150290
AXAG01000020
Alphaproteobacteria
Bradyrhizobium japonicum USDA 38 [AXAG]
138525
138441
-
Leu
CAA
[ENA]
¡û
>W141151149
AXAV01000017
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AXAV]
80874
80958
+
Leu
CAA
[ENA]
¡û
>W141169178
AXVP01000005
Alphaproteobacteria
Bradyrhizobium japonicum USDA 123 [AXVP]
80379
80463
+
Leu
CAA
[ENA]
¡û
>W141243626
CAJQ02000052
Alphaproteobacteria
Afipia birgiae 34632 [CAJQ]
60901
60985
+
Leu
CAA
[ENA]
¡û
>WENV183667568
ORJL010660211
[ORJL] groundwater metagenome; groundwater
566
650
+
Leu
CAA
[ENA]
¢þ
>WENV170553519
CXWK01021999
[CXWK] wastewater metagenome; activated sludge
13185
13101
-
Leu
CAA
[ENA]
¢þ
>WENV170705657
LNAP01000075
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
13671
13587
-
Leu
CAA
[ENA]
¢þ
>WENV170706675
LNAP01005424
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
10875
10791
-
Leu
CAA
[ENA]
¢þ
>WENV170709562
LNFM01000472
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
85822
85738
-
Leu
CAA
[ENA]
¢þ
>WENV170713373
LNFM01029671
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
189
273
+
Leu
CAA
[ENA]
¢þ
>WENV171003175
NNBT01002097
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
23949
23865
-
Leu
CAA
[ENA]
¢þ
>WENV171003758
NNBV01000657
[NNBV] plant metagenome; symbiotic tissue sample KVS11
20319
20403
+
Leu
CAA
[ENA]
¢þ
>C181001084
AP014946
Alphaproteobacteria
Variibacter gotjawalensis GJW-30 [AP014946]
552165
552081
-
Leu
CAA
-
¡û
>C191014014
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
4738268
4738352
+
Leu
CAA
-
¡û
>W141730490
JNIJ01000039
Alphaproteobacteria
Bradyrhizobium sp. URHD0069 [JNIJ]
30880
30796
-
Leu
CAA
[ENA]
¡û
>W1910183085
BJNK01000014
Alphaproteobacteria
Bradyrhizobium japonicum NBRC 14783 [BJNK]
131676
131592
-
Leu
CAA
[ENA]
¡û
>W1910548980
FZOX01000008
Alphaproteobacteria
Tardiphaga sp. OK246 [FZOX]
69774
69858
+
Leu
CAA
[ENA]
¡û
>W1910840119
MZXT01000009
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
194013
194097
+
Leu
CAA
[ENA]
¡û
>W1910840157
MZXU01000005
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
194013
194097
+
Leu
CAA
[ENA]
¡û
>W1910847659
NBDP01000019
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
151622
151706
+
Leu
CAA
[ENA]
¡û
>W1910914024
NHSJ01000133
Alphaproteobacteria
Rhodoblastus sphagnicola DSM 16996 [NHSJ]
26899
26815
-
Leu
CAA
[ENA]
¡û
>W1911148335
NPET01000056
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NPET]
9341
9257
-
Leu
CAA
[ENA]
¡û
>W1911219121
NRRJ01000026
Alphaproteobacteria
Rhodoblastus acidophilus DSM 137 [NRRJ]
9517
9433
-
Leu
CAA
[ENA]
¡û
>W1810089628
PGEV01000001
Alphaproteobacteria
Afipia broomeae GAS525 [PGEV]
4888050
4888134
+
Leu
CAA
[ENA]
¡û
>W1810252009
PQFZ01000006
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
57972
58056
+
Leu
CAA
[ENA]
¡û
>W1810463381
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
2508421
2508337
-
Leu
CAA
[ENA]
¡û
>W1810576974
QENW01000015
Alphaproteobacteria
Tardiphaga sp. OV697 [QENW]
73248
73332
+
Leu
CAA
[ENA]
¡û
>W1810676893
QKMI01000004
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
357835
357751
-
Leu
CAA
[ENA]
¡û
>W1810783329
QQTO01000042
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
107435
107519
+
Leu
CAA
[ENA]
¡û
>W1810783356
QQTP01000010
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
163019
162935
-
Leu
CAA
[ENA]
¡û
>W1810784384
QRAQ01000002
Alphaproteobacteria
Tardiphaga sp. CF115 [QRAQ]
1910489
1910405
-
Leu
CAA
[ENA]
¡û
>C151066564
CP010313
Alphaproteobacteria
Bradyrhizobium japonicum E109 [CP010313]
1523778
1523694
-
Leu
CAA
[Ensembl]
¡û
>W1510973707
JGCL01000002
Alphaproteobacteria
Bradyrhizobium japonicum FN1 [JGCL]
755947
756031
+
Leu
CAA
[ENA]
¡û
>W1511353618
JRPN01000018
Alphaproteobacteria
Bradyrhizobium japonicum Is-34 [JRPN]
79553
79637
+
Leu
CAA
[ENA]
¡û
>W1511517243
JXXE01000024
Alphaproteobacteria
Rhodopseudomonas palustris BAL398 [JXXE]
567
483
-
Leu
CAA
[ENA]
¡û
>W1511591991
LBIA01000001
Alphaproteobacteria
Afipia massiliensis LC387 [LBIA]
3095157
3095073
-
Leu
CAA
[ENA]
¡û
>W11168441
AFOF01000017
Alphaproteobacteria
Bradyrhizobiaceae bacterium SG-6C [AFOF]
14823
14739
-
Leu
CAA
[ENA]
¡û
>C121000494
AP012206
Alphaproteobacteria
Bradyrhizobium japonicum USDA 6 [AP012206]
1503374
1503290
-
Leu
CAA
[Ensembl]
¡û
>C161017382
CP007569
Alphaproteobacteria
Bradyrhizobium japonicum SEMIA 5079 [CP007569]
7195339
7195423
+
Leu
CAA
[Ensembl]
¡û
>C161070682
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
3695730
3695814
+
Leu
CAA
[Ensembl]
¡û
>C161107932
LN907826
Alphaproteobacteria
Bradyrhizobium sp. [LN907826]
8833770
8833854
+
Leu
CAA
-
¡û
>W121065318
AJPX01000667
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15354 [AJPX]
20889
20973
+
Leu
CAA
[ENA]
¡û
>W121065331
AJPY01000112
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15517 [AJPY]
20886
20970
+
Leu
CAA
[ENA]
¡û
>W121065402
AJPZ01000352
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 15618 [AJPZ]
41465
41549
+
Leu
CAA
[ENA]
¡û
>W121065433
AJQA01000145
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 25435 [AJQA]
20907
20991
+
Leu
CAA
[ENA]
¡û
>W121065477
AJQB01000196
Alphaproteobacteria
Bradyrhizobium japonicum CCBAU 83623 [AJQB]
20877
20961
+
Leu
CAA
[ENA]
¡û
>W1610617172
LGSZ01000047
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
172483
172567
+
Leu
CAA
[ENA]
¡û
>W1610648986
LJHQ01000018
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
60591
60675
+
Leu
CAA
[ENA]
¡û
>W1610731961
LMJW01000001
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
1087521
1087437
-
Leu
CAA
[ENA]
¡û
>W1610741859
LMRT01000009
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
262086
262170
+
Leu
CAA
[ENA]
¡û
>W1610912224
LSIB01000163
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
83441
83357
-
Leu
CAA
[ENA]
¡û
>W1610912676
LSIM01000122
Alphaproteobacteria
Bradyrhizobium sp. CCH4-A6 [LSIM]
58101
58185
+
Leu
CAA
[ENA]
¡û
>W1610912721
LSIN01000105
Alphaproteobacteria
Bradyrhizobium sp. CCH10-C7 [LSIN]
11991
11907
-
Leu
CAA
[ENA]
¡û
>W1610978958
LVYV01000001
Alphaproteobacteria
Tardiphaga robiniae [LVYV]
386204
386288
+
Leu
CAA
[ENA]
¡û
>W1710536641
FNTI01000001
Alphaproteobacteria
Bradyrhizobium lablabi [FNTI]
4374647
4374563
-
Leu
CAA
[ENA]
¡û
>W1710540654
FNWZ01000002
Alphaproteobacteria
Tardiphaga sp. OK245 [FNWZ]
68898
68982
+
Leu
CAA
[ENA]
¡û
>W1710546033
FOBX01000015
Alphaproteobacteria
Bradyrhizobium sp. OK095 [FOBX]
3313
3229
-
Leu
CAA
[ENA]
¡û
>W1710564914
FOQV01000004
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
102360
102444
+
Leu
CAA
[ENA]
¡û
>W1710568447
FOTP01000008
Alphaproteobacteria
Bradyrhizobium sp. NFR13 [FOTP]
165888
165804
-
Leu
CAA
[ENA]
¡û
>W1710609869
FYDG01000009
Alphaproteobacteria
Rhodoblastus acidophilus [FYDG]
9086
9002
-
Leu
CAA
[ENA]
¡û
>W1710742786
LGSZ01000047
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
172483
172567
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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