This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182444 (80 seq.)
>W1710864208
LMFR01000026
Actinomycetota
Microbacterium sp. Root53 [LMFR]
29789
29865
+
Pro
CGG
[ENA]
¡û
>W1710876163
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
416170
416096
-
Pro
CGG
[ENA]
¡û
>W1710879917
LMRZ01000001
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
881358
881281
-
Pro
CGG
[ENA]
¡û
>W1711022918
LRAD01000026
Actinomycetota
Microbacterium laevaniformans [LRAD]
245584
245510
-
Pro
CGG
[ENA]
¡û
>W1711350144
MCQY01000108
Actinomycetota
Mycobacterium tuberculosis [MCQY]
2190
2266
+
Pro
CGG
[ENA]
¡û
>W1711385649
MEEK01000041
Actinomycetota
Microbacterium sp. SCN 70-27 [MEEK]
35456
35380
-
Pro
CGG
[ENA]
¡û
>W1711385680
MEEL01000028
Actinomycetota
Microbacterium sp. SCN 69-37 [MEEL]
32142
32068
-
Pro
CGG
[ENA]
¡û
>W1711463327
MJIR01000069
Actinomycetota
Microbacterium sp. AR7-10 [MJIR]
24481
24555
+
Pro
CGG
[ENA]
¡û
>W1711501600
MKRU01000091
Actinomycetota
Microbacterium sp. 69-7 [MKRU]
69030
68956
-
Pro
CGG
[ENA]
¡û
>W1711575820
MNJN01000078
Actinomycetota
Catenulispora sp. 13_1_20CM_3_70_7 [MNJN]
12627
12701
+
Pro
CGG
[ENA]
¡û
>W131217667
ATXA01000010
Actinomycetota
Frankia sp. Iso899 [ATXA]
73710
73786
+
Pro
CGG
[ENA]
¡û
>WENV180004772
FLRS01155095
[FLRS] metagenome; saliva
1
75
+
Pro
CGG
[ENA]
¢þ
>WENV180017031
FSWJ01000622
[FSWJ] metagenome; soil
3545
3469
-
Pro
CGG
[ENA]
¢þ
>WENV180017048
FSWJ01000864
[FSWJ] metagenome; soil
3033
3109
+
Pro
CGG
[ENA]
¢þ
>w003999
AAEF02000035
Actinomycetota
Kineococcus radiotolerans SRS30216 [AAEF]
2387
2465
+
Pro
CGG
[ENA]
¡û
>WENV180690992
OCZS010044775
[OCZS] soil metagenome; soil
175
99
-
Pro
CGG
[ENA]
¢þ
>WENV180704678
ODEJ01000014
[ODEJ] human metagenome; G_DNA_Tongue dorsum
58854
58928
+
Pro
CGG
[ENA]
¢þ
>WENV180766100
ODID01039877
[ODID] human metagenome; G_DNA_Attached/Keratinized gingiva
46
120
+
Pro
CGG
[ENA]
¢þ
>WENV180773535
ODIJ01000498
[ODIJ] human metagenome; G_DNA_Tongue dorsum
9287
9361
+
Pro
CGG
[ENA]
¢þ
>WENV180782449
ODIQ01000019
[ODIQ] human metagenome; G_DNA_Tongue dorsum
60464
60538
+
Pro
CGG
[ENA]
¢þ
>WENV180819583
ODJR01000193
[ODJR] human metagenome; G_DNA_Tongue dorsum
37745
37671
-
Pro
CGG
[ENA]
¢þ
>WENV180830187
ODKB01000755
[ODKB] human metagenome; G_DNA_Tongue dorsum
9006
9080
+
Pro
CGG
[ENA]
¢þ
>WENV180854460
ODKX01003799
[ODKX] human metagenome; G_DNA_Tongue dorsum
414
340
-
Pro
CGG
[ENA]
¢þ
>WENV180864118
ODLH01011237
[ODLH] human metagenome; G_DNA_Tongue dorsum
144
218
+
Pro
CGG
[ENA]
¢þ
>WENV180896487
ODNI01000805
[ODNI] human metagenome; G_DNA_Tongue dorsum
10904
10978
+
Pro
CGG
[ENA]
¢þ
>WENV180901365
ODOK01000009
[ODOK] human metagenome; G_DNA_Tongue dorsum
48573
48499
-
Pro
CGG
[ENA]
¢þ
>WENV180929031
ODTN01000354
[ODTN] human metagenome; G_DNA_Tongue dorsum
28828
28902
+
Pro
CGG
[ENA]
¢þ
>WENV180948641
ODUG01002602
[ODUG] human metagenome; G_DNA_Tongue dorsum
2352
2278
-
Pro
CGG
[ENA]
¢þ
>WENV180954142
ODUJ01000420
[ODUJ] human metagenome; G_DNA_Tongue dorsum
4401
4327
-
Pro
CGG
[ENA]
¢þ
>WENV180985221
ODVJ01001375
[ODVJ] human metagenome; G_DNA_Tongue dorsum
2387
2313
-
Pro
CGG
[ENA]
¢þ
>WENV181038642
ODXQ01002955
[ODXQ] human metagenome; G_DNA_Tongue dorsum
8551
8625
+
Pro
CGG
[ENA]
¢þ
>WENV181045371
ODXW01000132
[ODXW] human metagenome; G_DNA_Tongue dorsum
38416
38490
+
Pro
CGG
[ENA]
¢þ
>WENV181058557
ODYL01017715
[ODYL] human metagenome; G_DNA_Tongue dorsum
322
396
+
Pro
CGG
[ENA]
¢þ
>WENV181068724
ODZZ01001324
[ODZZ] human metagenome; G_DNA_Tongue dorsum
2241
2167
-
Pro
CGG
[ENA]
¢þ
>WENV181073292
OEAO01000080
[OEAO] human metagenome; G_DNA_Tongue dorsum
62228
62302
+
Pro
CGG
[ENA]
¢þ
>WENV181112525
OEEL01001177
[OEEL] human metagenome; G_DNA_Tongue dorsum
5077
5003
-
Pro
CGG
[ENA]
¢þ
>WENV181124701
OEFT01000834
[OEFT] human metagenome; G_DNA_Tongue dorsum
8452
8526
+
Pro
CGG
[ENA]
¢þ
>WENV181135485
OEGG01022887
[OEGG] human metagenome; G_DNA_Tongue dorsum
453
527
+
Pro
CGG
[ENA]
¢þ
>WENV181138810
OEGN01000810
[OEGN] human metagenome; G_DNA_Tongue dorsum
16591
16665
+
Pro
CGG
[ENA]
¢þ
>WENV181175633
OEJQ01011907
[OEJQ] human metagenome; G_DNA_Tongue dorsum
6
80
+
Pro
CGG
[ENA]
¢þ
>WENV181401705
OFTX01003326
[OFTX] sludge metagenome; sludge
476
550
+
Pro
CGG
[ENA]
¢þ
>W141146495
AWVQ01000088
Actinomycetota
Leifsonia aquatica ATCC 14665 [AWVQ]
12071
11995
-
Pro
CGG
[ENA]
¡û
>W141170072
AXWW01000027
Actinomycetota
Actinokineospora inagensis DSM 44258 [AXWW]
92499
92425
-
Pro
CGG
[ENA]
¡û
>WENV183735309
PJUA01010463
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
164
239
+
Pro
CGG
[ENA]
¢þ
>WENV183750310
PPFU01285189
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1287
1213
-
Pro
CGG
[ENA]
¢þ
>WENV170010645
APMI01023726
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
233
309
+
Pro
CGG
[ENA]
¢þ
>WENV170010755
APMI01027674
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
556
632
+
Pro
CGG
[ENA]
¢þ
>WENV170011528
APMI01072245
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
77
1
-
Pro
CGG
[ENA]
¢þ
>WENV170012247
APMI01141594
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1
77
+
Pro
CGG
[ENA]
¢þ
>WENV170370894
CETR01181770
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
118
194
+
Pro
CGG
[ENA]
¢þ
>WENV170973824
MTKY01051123
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
279
355
+
Pro
CGG
[ENA]
¢þ
>C181115731
CP025299
Actinomycetota
Microbacterium hominis SJTG1 [CP025299]
1124173
1124099
-
Pro
CGG
-
¡û
>C181200543
CP031447
Actinomycetota
Austwickia chelonae LK16-18 [CP031447]
467099
467023
-
Pro
CGG
-
¡û
>C191104260
CP033325
Actinomycetota
Georgenia faecalis ZLJ0423 [CP033325]
198932
198856
-
Pro
CGG
-
¡û
>C191147739
CP036164
Actinomycetota
Janibacter limosus P3-3-X1 [CP036164]
253229
253152
-
Pro
CGG
-
¡û
>W09108480
ABTI01000001
Actinomycetota
Catenulispora acidiphila DSM 44928 [ABTI]
594266
594342
+
Pro
CGG
[ENA]
¡û
>W1910225165
FMSE01000005
Actinomycetota
Microbacteriaceae bacterium Alg239_V181 [FMSE]
59118
59043
-
Pro
CGG
[ENA]
¡û
>W1911535359
OLMV01000008
Actinomycetota
Microbacterium timonense Marseille-P5731 [OLMV]
94077
94153
+
Pro
CGG
[ENA]
¡û
>W1911566482
PCOW01000001
Actinomycetota
Microbacterium sp. MYb64 [PCOW]
227284
227208
-
Pro
CGG
[ENA]
¡û
>W1911584659
PIPF01000019
Actinomycetota
Janibacter hoylei PVAS-1 [PIPF]
14020
14097
+
Pro
CGG
[ENA]
¡û
>W1911615598
PPCV01000002
Actinomycetota
Propioniciclava flava VG341 [PPCV]
12188
12112
-
Pro
CGG
[ENA]
¡û
>W1810158867
PJCV01000008
Actinomycetota
Actinomycetales bacterium SN12 [PJCV]
34631
34557
-
Pro
CGG
[ENA]
¡û
>W1810365466
PVUE01000003
Actinomycetota
Antricoccus suffuscus DSM 100065 [PVUE]
137610
137686
+
Pro
CGG
[ENA]
¡û
>W1810701927
QMFW01000129
Actinomycetota
Janibacter anophelis TNDT5 [QMFW]
1527
1450
-
Pro
CGG
[ENA]
¡û
>W1810861618
QTTZ01000001
Actinomycetota
Microbacterium trichothecenolyticum ZKA46 [QTTZ]
4146809
4146735
-
Pro
CGG
[ENA]
¡û
>W1810861679
QTUA01000001
Actinomycetota
Calidifontibacter indicus DSM 22967 [QTUA]
959868
959792
-
Pro
CGG
[ENA]
¡û
>C10102572
CP001700
Actinomycetota
Catenulispora acidiphila DSM 44928 [CP001700]
10424718
10424642
-
Pro
CGG
[Ensembl]
¡û
>W1511313244
JPSY01000002
Actinomycetota
Microbacterium profundi Shh49 [JPSY]
53868
53792
-
Pro
CGG
[ENA]
¡û
>W1511528861
JYIX01000039
Actinomycetota
Microbacterium azadirachtae ARN176 [JYIX]
125656
125580
-
Pro
CGG
[ENA]
¡û
>W1511528980
JYJA01000032
Actinomycetota
Microbacterium trichothecenolyticum DSM 8608 [JYJA]
6046
5972
-
Pro
CGG
[ENA]
¡û
>W121061267
AJGR01000124
Actinomycetota
Microbacterium laevaniformans OR221 [AJGR]
160298
160372
+
Pro
CGG
[ENA]
¡û
>W1610049587
BBFC01000902
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
702
626
-
Pro
CGG
[ENA]
¡û
>W1610072325
BCUV01000009
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
19093
19016
-
Pro
CGG
[ENA]
¡û
>W1610726554
LMFR01000026
Actinomycetota
Microbacterium sp. Root53 [LMFR]
29789
29865
+
Pro
CGG
[ENA]
¡û
>W1610738509
LMOZ01000002
Actinomycetota
Leifsonia sp. Leaf336 [LMOZ]
416170
416096
-
Pro
CGG
[ENA]
¡û
>W1610742263
LMRZ01000001
Actinomycetota
Janibacter sp. Soil728 [LMRZ]
881358
881281
-
Pro
CGG
[ENA]
¡û
>W1610871163
LRAD01000026
Actinomycetota
Microbacterium laevaniformans [LRAD]
245584
245510
-
Pro
CGG
[ENA]
¡û
>W1710045986
BBFC01000902
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
702
626
-
Pro
CGG
[ENA]
¡û
>W1710069527
BCUV01000009
Actinomycetota
Janibacter terrae NBRC 107853 [BCUV]
19093
19016
-
Pro
CGG
[ENA]
¡û
>W1710510775
FMYF01000003
Actinomycetota
Raineyella antarctica [FMYF]
87881
87957
+
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK