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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182456 (27 seq.)
>W1711749270
MUMJ01000233
Actinomycetota
Amycolatopsis lexingtonensis [MUMJ]
21779
21703
-
Phe
GAA
[ENA]
¡û
>W131186138
ARVW01000001
Actinomycetota
Amycolatopsis nigrescens CSC17Ta-90 [ARVW]
3971430
3971506
+
Phe
GAA
[ENA]
¡û
>WENV180023376
FTHV01002303
[FTHV] metagenome; soil
398
324
-
Phe
GAA
[ENA]
¢þ
>WENV180033846
FTKL01501063
[FTKL] metagenome; soil
2934
3008
+
Phe
GAA
[ENA]
¢þ
>W141278055
JAFB01000005
Actinomycetota
Amycolatopsis taiwanensis DSM 45107 [JAFB]
11317
11243
-
Phe
GAA
[ENA]
¡û
>W09109957
ABUS01000002
Actinomycetota
Stackebrandtia nassauensis DSM 44728 [ABUS]
1013695
1013619
-
Phe
GAA
[ENA]
¡û
>W141756173
JNWZ01000100
Actinomycetota
Kitasatospora phosalacinea [JNWZ]
13270
13196
-
Phe
GAA
[ENA]
¡û
>W141757829
JNYE01000017
Actinomycetota
Kitasatospora phosalacinea [JNYE]
367
441
+
Phe
GAA
[ENA]
¡û
>W141761033
JOAL01000300
Actinomycetota
Actinoalloteichus caeruleus cyanogriseus [JOAL]
1965
1891
-
Phe
GAA
[ENA]
¡û
>W141761944
JOBB01008667
Actinomycetota
Kitasatospora purpeofusca purpeofuscus [JOBB]
352
428
+
Phe
GAA
[ENA]
¡û
>W141767545
JOER01000040
Actinomycetota
Kitasatospora aureofaciens [JOER]
12348
12274
-
Phe
GAA
[ENA]
¡û
>W1910657705
MASW01000001
Actinomycetota
Prauserella muralis DSM 45305 [MASW]
572354
572278
-
Phe
GAA
[ENA]
¡û
>W1910812663
MVFD01000002
Actinomycetota
Amycolatopsis sp. BJA-103 [MVFD]
784703
784778
+
Phe
GAA
[ENA]
¡û
>W1911243731
NSGV01000001
Actinomycetota
Streptomyces sp. TLI_235 [NSGV]
3585406
3585481
+
Phe
GAA
[ENA]
¡û
>W1911615616
PPCV01000010
Actinomycetota
Propioniciclava flava VG341 [PPCV]
39880
39958
+
Phe
GAA
[ENA]
¡û
>W1911678672
QHJI01000001
Actinomycetota
Amycolatopsis sp. WAC 04169 [QHJI]
847991
848066
+
Phe
GAA
[ENA]
¡û
>W1810091104
PGGV01000033
Actinomycetota
Glycomyces xiaoerkulensis TRM 41368 [PGGV]
14813
14889
+
Phe
GAA
[ENA]
¡û
>W1810237633
PPHF01000136
Actinomycetota
Amycolatopsis sp. CA-126428 [PPHF]
235209
235283
+
Phe
GAA
[ENA]
¡û
>W1810579754
QEQT01000100
Actinomycetota
Prauserella sp. PE36 [QEQT]
255577
255651
+
Phe
GAA
[ENA]
¡û
>W1810588350
QFRW01000052
Actinomycetota
Glycomyces dulcitolivorans SJ-25 [QFRW]
30983
31059
+
Phe
GAA
[ENA]
¡û
>W1810675442
QKKY01000552
Actinomycetota
Aeromicrobium sp. IBM16_104W [QKKY]
1088
1163
+
Phe
GAA
[ENA]
¡û
>W1510014143
BBPO01000018
Actinomycetota
Streptacidiphilus neutrinimicus NBRC 100921 [BBPO]
111359
111433
+
Phe
GAA
[ENA]
¡û
>C10112165
CP001778
Actinomycetota
Stackebrandtia nassauensis DSM 44728 [CP001778]
6834441
6834517
+
Phe
GAA
[Ensembl]
¡û
>W1511529098
JYJF01000134
Actinomycetota
Saccharothrix sp. ST-888 [JYJF]
3225
3301
+
Phe
GAA
[ENA]
¡û
>W1511545283
JZKH01000125
Actinomycetota
Streptomyces rubellomurinus ATCC 31215 [JZKH]
2596
2670
+
Phe
GAA
[ENA]
¡û
>W1511687927
LFVW01000538
Actinomycetota
Kitasatospora sp. MY 5-36 [LFVW]
7133
7057
-
Phe
GAA
[ENA]
¡û
>W121024686
AHBX01000042
Actinomycetota
Saccharomonospora azurea SZMC 14600 [AHBX]
2371
2445
+
Phe
GAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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