This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182466 (94 seq.)
>C006887
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
285944
286020
+
Ile
GAT
[Ensembl]
¡û
>C006915
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
2378447
2378371
-
Ile
GAT
[Ensembl]
¡û
>WENV181226276
OFDK01000551
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
2039
2115
+
Ile
GAT
[ENA]
¢þ
>WENV170643351
JFJP01053955
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
700
776
+
Ile
GAT
[ENA]
¢þ
>C191131091
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
306054
306130
+
Ile
GAT
-
¡û
>C191131101
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
1031213
1031289
+
Ile
GAT
-
¡û
>W09104546
AALW01000040
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
13385
13309
-
Ile
GAT
[ENA]
¡û
>W09104563
AALW01000067
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
8275
8351
+
Ile
GAT
[ENA]
¡û
>W09113793
ABYZ01000002
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
41309
41385
+
Ile
GAT
[ENA]
¡û
>W09113795
ABYZ01000002
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
42785
42861
+
Ile
GAT
[ENA]
¡û
>W09113824
ABYZ01000006
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
132193
132269
+
Ile
GAT
[ENA]
¡û
>C09100821
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
451828
451904
+
Ile
GAT
[Ensembl]
¡û
>C09100850
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
1794676
1794600
-
Ile
GAT
[Ensembl]
¡û
>W1911155324
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
629647
629723
+
Ile
GAT
[ENA]
¡û
>W1911155346
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
2860785
2860709
-
Ile
GAT
[ENA]
¡û
>W1911155355
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1962437
1962361
-
Ile
GAT
[ENA]
¡û
>W1911244025
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
1610207
1610283
+
Ile
GAT
[ENA]
¡û
>W1911244034
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
2506941
2507017
+
Ile
GAT
[ENA]
¡û
>W1911244037
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
2689885
2689961
+
Ile
GAT
[ENA]
¡û
>W1911244062
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
175817
175893
+
Ile
GAT
[ENA]
¡û
>W1911244086
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
2413871
2413795
-
Ile
GAT
[ENA]
¡û
>W1911244095
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
1499592
1499516
-
Ile
GAT
[ENA]
¡û
>W1911244112
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
728770
728846
+
Ile
GAT
[ENA]
¡û
>W1911244136
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
2052558
2052482
-
Ile
GAT
[ENA]
¡û
>W1911244156
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
55857
55781
-
Ile
GAT
[ENA]
¡û
>W1911244163
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
161215
161291
+
Ile
GAT
[ENA]
¡û
>W1911244172
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1067203
1067279
+
Ile
GAT
[ENA]
¡û
>W1911244189
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
2376462
2376386
-
Ile
GAT
[ENA]
¡û
>W1911244231
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2876949
2876873
-
Ile
GAT
[ENA]
¡û
>W1911244240
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
1963512
1963436
-
Ile
GAT
[ENA]
¡û
>W1911244243
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
1780568
1780492
-
Ile
GAT
[ENA]
¡û
>W1911572526
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
70258
70334
+
Ile
GAT
[ENA]
¡û
>W1911572535
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
987110
987186
+
Ile
GAT
[ENA]
¡û
>W1911572552
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
2314635
2314559
-
Ile
GAT
[ENA]
¡û
>W1911572576
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
1424364
1424440
+
Ile
GAT
[ENA]
¡û
>W1911572589
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
2756707
2756631
-
Ile
GAT
[ENA]
¡û
>W1911572609
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
753429
753353
-
Ile
GAT
[ENA]
¡û
>W1911572621
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
156092
156168
+
Ile
GAT
[ENA]
¡û
>W1911572630
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
1082443
1082519
+
Ile
GAT
[ENA]
¡û
>W1911572647
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
2403509
2403433
-
Ile
GAT
[ENA]
¡û
>W1810052240
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
536490
536566
+
Ile
GAT
[ENA]
¡û
>W1810052260
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
2528598
2528674
+
Ile
GAT
[ENA]
¡û
>W1810052266
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
1857570
1857494
-
Ile
GAT
[ENA]
¡û
>W1810071879
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
110211
110287
+
Ile
GAT
[ENA]
¡û
>W1810071888
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1022853
1022929
+
Ile
GAT
[ENA]
¡û
>W1810071905
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
2357490
2357414
-
Ile
GAT
[ENA]
¡û
>W1810071928
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1144355
1144431
+
Ile
GAT
[ENA]
¡û
>W1810071937
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
2055322
2055398
+
Ile
GAT
[ENA]
¡û
>W1810071961
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
471420
471344
-
Ile
GAT
[ENA]
¡û
>W1810071977
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
1350406
1350482
+
Ile
GAT
[ENA]
¡û
>W1810071991
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
2684986
2684910
-
Ile
GAT
[ENA]
¡û
>W1810072011
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
678801
678725
-
Ile
GAT
[ENA]
¡û
>W1810367997
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
1213397
1213473
+
Ile
GAT
[ENA]
¡û
>W1810368016
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
2548029
2547953
-
Ile
GAT
[ENA]
¡û
>W1810368036
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
541971
541895
-
Ile
GAT
[ENA]
¡û
>C10103624
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
427058
427134
+
Ile
GAT
[Ensembl]
¡û
>C10103635
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
999660
999736
+
Ile
GAT
[Ensembl]
¡û
>C10113474
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
1374795
1374719
-
Ile
GAT
[Ensembl]
¡û
>C11105205
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1064468
1064544
+
Ile
GAT
[Ensembl]
¡û
>C11105220
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
2338394
2338318
-
Ile
GAT
[Ensembl]
¡û
>C11105374
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
384315
384391
+
Ile
GAT
[Ensembl]
¡û
>C11105397
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
1788298
1788222
-
Ile
GAT
[Ensembl]
¡û
>C11105430
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
1171838
1171914
+
Ile
GAT
[Ensembl]
¡û
>C11105445
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
2446095
2446019
-
Ile
GAT
[Ensembl]
¡û
>C11105491
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
1191394
1191318
-
Ile
GAT
[Ensembl]
¡û
>C11105843
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
302008
302084
+
Ile
GAT
[Ensembl]
¡û
>C11105872
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1529831
1529755
-
Ile
GAT
[Ensembl]
¡û
>W11139448
AEKC01000073
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
3637
3561
-
Ile
GAT
[ENA]
¡û
>W11139450
AEKC01000095
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
114
38
-
Ile
GAT
[ENA]
¡û
>W11139495
AEKD01000089
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
320
396
+
Ile
GAT
[ENA]
¡û
>W11139497
AEKD01000128
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
124
48
-
Ile
GAT
[ENA]
¡û
>W1511563941
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
626847
626923
+
Ile
GAT
[ENA]
¡û
>W1511563965
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1959202
1959126
-
Ile
GAT
[ENA]
¡û
>W1511564002
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
537366
537290
-
Ile
GAT
[ENA]
¡û
>W1511564030
LACN01000012
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
387276
387352
+
Ile
GAT
[ENA]
¡û
>W1511564047
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1155643
1155719
+
Ile
GAT
[ENA]
¡û
>W1511564070
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
107288
107212
-
Ile
GAT
[ENA]
¡û
>W1710603738
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
1509056
1509132
+
Ile
GAT
[ENA]
¡û
>W1710603753
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
2852116
2852040
-
Ile
GAT
[ENA]
¡û
>W1710603814
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
2526706
2526782
+
Ile
GAT
[ENA]
¡û
>W1710603836
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
948225
948149
-
Ile
GAT
[ENA]
¡û
>W1710603892
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
549621
549697
+
Ile
GAT
[ENA]
¡û
>W1710603914
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2814440
2814364
-
Ile
GAT
[ENA]
¡û
>W1710603923
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
1896677
1896601
-
Ile
GAT
[ENA]
¡û
>W1710605086
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
960181
960105
-
Ile
GAT
[ENA]
¡û
>W1710609660
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
1427699
1427775
+
Ile
GAT
[ENA]
¡û
>W1710609675
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
2770777
2770701
-
Ile
GAT
[ENA]
¡û
>W1710609698
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
825615
825691
+
Ile
GAT
[ENA]
¡û
>W1710609723
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
2165148
2165072
-
Ile
GAT
[ENA]
¡û
>W1710609737
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
457800
457724
-
Ile
GAT
[ENA]
¡û
>W1710609744
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
723558
723634
+
Ile
GAT
[ENA]
¡û
>W1710609767
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
2066613
2066537
-
Ile
GAT
[ENA]
¡û
>W1710609789
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
716303
716379
+
Ile
GAT
[ENA]
¡û
>W1710609813
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
2059156
2059080
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK