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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182471 (58 seq.)
>W1710785478
LJHX01000009
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
23222
23298
+
His
GTG
[ENA]
¡û
>W1710862427
LMEJ01000010
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
281221
281145
-
His
GTG
[ENA]
¡û
>W1710863928
LMFM01000014
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
51120
51196
+
His
GTG
[ENA]
¡û
>W1710867188
LMIB01000015
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
339916
339840
-
His
GTG
[ENA]
¡û
>W1710867298
LMID01000014
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
50746
50822
+
His
GTG
[ENA]
¡û
>W1711069404
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
672556
672480
-
His
GTG
[ENA]
¡û
>C171047033
CP016306
Alphaproteobacteria
Sphingomonas sp. KC8 [CP016306]
390337
390413
+
His
GTG
-
¡û
>C171115122
CP021053
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-1960 [CP021053]
25279
25355
+
His
GTG
-
¡û
>C171117078
CP021181
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [CP021181]
892166
892090
-
His
GTG
-
¡û
>W131046815
AMSR01000012
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 31822 [AMSR]
262601
262525
-
His
GTG
[ENA]
¡û
>W131098380
AORL01000021
Alphaproteobacteria
Sphingomonas sp. PR090111-T3T-6A [AORL]
696862
696786
-
His
GTG
[ENA]
¡û
>W131196583
ASTM01000031
Alphaproteobacteria
Sphingomonas sp. YL-JM2C [ASTM]
33133
33209
+
His
GTG
[ENA]
¡û
>C024964
CP000699
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [CP000699]
4375752
4375828
+
His
GTG
[Ensembl]
¡û
>C027950
AE008692
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [AE008692]
1234087
1234011
-
His
GTG
[Ensembl]
¡û
>WENV180020533
FTCZ01005642
[FTCZ] metagenome; soil
5966
5890
-
His
GTG
[ENA]
¢þ
>WENV180020625
FTCZ01007602
[FTCZ] metagenome; soil
339
415
+
His
GTG
[ENA]
¢þ
>WENV180026296
FTIT01001064
[FTIT] metagenome; soil
353
277
-
His
GTG
[ENA]
¢þ
>WENV180026395
FTIT01037638
[FTIT] metagenome; soil
727
651
-
His
GTG
[ENA]
¢þ
>WENV180031890
FTJU01000612
[FTJU] metagenome; soil
2993
3069
+
His
GTG
[ENA]
¢þ
>WENV170010235
APMI01011178
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
6042
6118
+
His
GTG
[ENA]
¢þ
>C181081612
CP023449
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20 [CP023449]
4465939
4465863
-
His
GTG
-
¡û
>C181088886
CP023677
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023677]
1236447
1236371
-
His
GTG
-
¡û
>C181088937
CP023682
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 [CP023682]
1236447
1236371
-
His
GTG
-
¡û
>C181089264
CP023715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP023715]
1236446
1236370
-
His
GTG
-
¡û
>C191095152
CP032829
Alphaproteobacteria
Sphingomonas paeninsulae YZ-8 [CP032829]
230792
230716
-
His
GTG
-
¡û
>C191145611
CP035711
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 [CP035711]
1234045
1233969
-
His
GTG
-
¡û
>C191145662
CP035712
Alphaproteobacteria
Zymomonas mobilis ZM4* [CP035712]
1234045
1233969
-
His
GTG
-
¡û
>C191145713
CP035713
Alphaproteobacteria
Zymomonas mobilis ER79ag [CP035713]
1234045
1233969
-
His
GTG
-
¡û
>W09106501
AAVK01000002
Alphaproteobacteria
Rhizorhabdus wittichii RW1 [AAVK]
244296
244372
+
His
GTG
[ENA]
¡û
>W09133974
ACQU01000006
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [ACQU]
86698
86622
-
His
GTG
[ENA]
¡û
>W141713947
JMUB01000036
Alphaproteobacteria
Rhizorhabdus wittichii DC-6 [JMUB]
25959
25883
-
His
GTG
[ENA]
¡û
>W141819162
JQMC01000002
Alphaproteobacteria
Rhizorhabdus wittichii [JQMC]
112054
111978
-
His
GTG
[ENA]
¡û
>W1910182408
BJMW01000006
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NBRC 13756 [BJMW]
26665
26741
+
His
GTG
[ENA]
¡û
>W1910182469
BJMX01000007
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae NBRC 13757 [BJMX]
64713
64637
-
His
GTG
[ENA]
¡û
>C141006132
CP006644
Alphaproteobacteria
Sphingomonas sanxanigenens DSM 19645 = NX02 [CP006644]
2734383
2734307
-
His
GTG
[Ensembl]
¡û
>C141008783
CP006818
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP006818]
141152
141228
+
His
GTG
[Ensembl]
¡û
>W1911391064
NWBU01000010
Alphaproteobacteria
Sphingomonas oleivorans FW-11 [NWBU]
463170
463246
+
His
GTG
[ENA]
¡û
>W1911411133
NWUF01000002
Alphaproteobacteria
Rhizorhabdus dicambivorans Ndbn-20m [NWUF]
247113
247189
+
His
GTG
[ENA]
¡û
>W1810858391
QTJP01000001
Alphaproteobacteria
Sphingomonas crusticola MIMD3 [QTJP]
3113922
3113998
+
His
GTG
[ENA]
¡û
>C151004582
CP003709
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NRRL B-12526 [CP003709]
140927
141003
+
His
GTG
[Ensembl]
¡û
>C151004633
CP003715
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 [CP003715]
140927
141003
+
His
GTG
[Ensembl]
¡û
>C10114566
CP001722
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis NCIMB 11163 [CP001722]
136086
136162
+
His
GTG
[Ensembl]
¡û
>C11124206
CP002865
Alphaproteobacteria
Zymomonas mobilis subsp. pomaceae ATCC 29192 [CP002865]
104236
104312
+
His
GTG
[Ensembl]
¡û
>W1511581124
LARW01000112
Alphaproteobacteria
Sphingomonas sp. SRS2 [LARW]
25204
25128
-
His
GTG
[ENA]
¡û
>W1511633040
LDES01000024
Alphaproteobacteria
Sphingomonas sp. Y57 [LDES]
300534
300610
+
His
GTG
[ENA]
¡û
>W11167359
AFMP01000042
Alphaproteobacteria
Sphingomonas sp. KC8 [AFMP]
29231
29155
-
His
GTG
[ENA]
¡û
>C121003127
CP002850
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 10988 [CP002850]
134313
134389
+
His
GTG
[Ensembl]
¡û
>C121015240
CP003704
Alphaproteobacteria
Zymomonas mobilis subsp. mobilis ATCC 29191 [CP003704]
134735
134811
+
His
GTG
[Ensembl]
¡û
>W121034448
AHKO01000615
Alphaproteobacteria
Rhizorhabdus wittichii DP58 [AHKO]
6133
6209
+
His
GTG
[ENA]
¡û
>W1610649284
LJHX01000009
Alphaproteobacteria
alpha proteobacterium AAP81b [LJHX]
23222
23298
+
His
GTG
[ENA]
¡û
>W1610724773
LMEJ01000010
Alphaproteobacteria
Sphingomonas sp. Root1294 [LMEJ]
281221
281145
-
His
GTG
[ENA]
¡û
>W1610726274
LMFM01000014
Alphaproteobacteria
Sphingomonas sp. Root50 [LMFM]
51120
51196
+
His
GTG
[ENA]
¡û
>W1610729534
LMIB01000015
Alphaproteobacteria
Sphingomonas sp. Root710 [LMIB]
339916
339840
-
His
GTG
[ENA]
¡û
>W1610729644
LMID01000014
Alphaproteobacteria
Sphingomonas sp. Root720 [LMID]
50746
50822
+
His
GTG
[ENA]
¡û
>W1610909932
LSFP01000002
Alphaproteobacteria
Zymomonas mobilis [LSFP]
672556
672480
-
His
GTG
[ENA]
¡û
>W1710512393
FMZJ01000016
Alphaproteobacteria
Sphingomonas sp. YR710 [FMZJ]
75172
75248
+
His
GTG
[ENA]
¡û
>W1710602732
FUYM01000002
Alphaproteobacteria
Rhizorhabdus histidinilytica [FUYM]
472381
472457
+
His
GTG
[ENA]
¡û
>W1710743460
LGVA01000006
Alphaproteobacteria
Sphingomonas sp. Ndbn-20 [LGVA]
65816
65892
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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