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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182527 (26 seq.)
>W131240741
BAOL01000030
Actinomycetota
Ilumatobacter nonamiensis YM16-303 [BAOL]
5597
5673
+
Pro
GGG
[ENA]
¡û
>WENV001417
AACY020040567
Marine microbial communities from Global Ocean Sampling (GOS)
1357
1433
+
Pro
GGG
[ENA]
>WENV180099931
OANK01004070
[OANK] marine metagenome; ENVO:00002010
533
607
+
Pro
GGG
[ENA]
¢þ
>WENV180101067
OAOU01000122
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
3970
4044
+
Pro
GGG
[ENA]
¢þ
>WENV180102754
OAOZ01010572
[OAOZ] marine metagenome; ENVO:00002010
146
220
+
Pro
GGG
[ENA]
¢þ
>WENV180367544
OBOE01141030
[OBOE] marine metagenome; ENVO:00002010
243
317
+
Pro
GGG
[ENA]
¢þ
>WENV180389438
OBPJ01017865
[OBPJ] marine metagenome; seawater
592
666
+
Pro
GGG
[ENA]
¢þ
>WENV180585390
OCOL01004070
[OCOL] marine metagenome; ENVO:00002010
533
607
+
Pro
GGG
[ENA]
¢þ
>WENV183621713
OOFU01038096
[OOFU] marine metagenome; sea ice
362
288
-
Pro
GGG
[ENA]
¢þ
>WENV170120147
CENJ01196378
[CENJ] marine metagenome genome assembly TARA_009_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
319
393
+
Pro
GGG
[ENA]
¢þ
>WENV170135033
CENU01167991
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1400
1326
-
Pro
GGG
[ENA]
¢þ
>WENV170536139
CEWP01154991
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
691
765
+
Pro
GGG
[ENA]
¢þ
>WENV170568844
FLMP01086326
[FLMP] seawater metagenome; seawater
227
151
-
Pro
GGG
[ENA]
¢þ
>WENV170572252
FLOH01000659
[FLOH] marine metagenome; water
39782
39706
-
Pro
GGG
[ENA]
¢þ
>WENV170600575
FUWD010133323
[FUWD] metagenome; unknown
179
103
-
Pro
GGG
[ENA]
¢þ
>WENV170623640
FUWD013161722
[FUWD] metagenome; unknown
570
643
+
Pro
GGG
[ENA]
¢þ
>WENV170626437
FUWD013222485
[FUWD] metagenome; unknown
1059
983
-
Pro
GGG
[ENA]
¢þ
>WENV170631918
FUWD013371013
[FUWD] metagenome; unknown
570
643
+
Pro
GGG
[ENA]
¢þ
>WENV170948815
MEHZ011286505
[MEHZ] marine metagenome; marine surface water
9762
9838
+
Pro
GGG
[ENA]
¢þ
>C191178334
CP040508
Actinomycetota
Rhodoluna limnophila 1B-Mac [CP040508]
1328449
1328375
-
Pro
GGG
-
¡û
>C191178373
CP040509
Actinomycetota
Rhodoluna limnophila 27D-LEPI [CP040509]
1303319
1303245
-
Pro
GGG
-
¡û
>C151025285
CP007490
Actinomycetota
Rhodoluna lacicola MWH-Ta8 [CP007490]
1342827
1342751
-
Pro
GGG
[Ensembl]
¡û
>SRA1050753
SRR035096.15205
454 Sequencing (SRP001817)
118
42
-
Pro
GGG
[SRA]
>C11111561
CP002810
Actinomycetota
Isoptericola variabilis 225 [CP002810]
1645547
1645623
+
Pro
GGG
[Ensembl]
¡û
>WENV057682
AACY023302781
Marine microbial communities from Global Ocean Sampling (GOS)
753
829
+
Pro
GGG
[ENA]
>C131000135
AP012057
Actinomycetota
Ilumatobacter coccineus YM16-304 [AP012057]
2845072
2845148
+
Pro
GGG
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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