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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182676 (54 seq.)
>W131223836
AUCI01000037
Bacillota
Salibacterium aidingense DSM 18341 [AUCI]
16225
16149
-
Met
CAT
[ENA]
¡û
>W1711413494
MGWG01000002
Bacillota
Firmicutes bacterium RBG_13_65_8 [MGWG]
13731
13655
-
Met
CAT
[ENA]
¡û
>W131051967
AMYG01000022
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
24238
24162
-
Met
CAT
[ENA]
¡û
>W131167579
ARDJ01000022
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
304465
304389
-
Met
CAT
[ENA]
¡û
>w010188
AAKQ01000006
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
16534
16612
+
Met
CAT
[ENA]
¡û
>W141092590
AVAF01000095
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
5013
4937
-
Met
CAT
[ENA]
¡û
>WENV181226076
OFDK01000019
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
4615
4539
-
fMet
CAT
[ENA]
¢þ
>C08010947
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
729731
729807
+
Met
CAT
[Ensembl]
¡û
>C08011031
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
294846
294922
+
Met
CAT
[Ensembl]
¡û
>W141276487
JADV01000017
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [JADV]
6730
6654
-
Met
CAT
[ENA]
¡û
>WENV170561101
CZCA01002906
[CZCA] anaerobic digester metagenome; anaerobic digester
447
371
-
Met
CAT
[ENA]
¢þ
>WENV170562859
CZCB01006235
[CZCB] anaerobic digester metagenome; anaerobic digester
441
365
-
Met
CAT
[ENA]
¢þ
>WENV170675642
LDZP01000174
[LDZP] terrestrial metagenome; oil reservoir sample I1
47813
47889
+
Met
CAT
[ENA]
¢þ
>WENV170676899
LDZS01003115
[LDZS] terrestrial metagenome; oil reservoir sample K3
161
85
-
Met
CAT
[ENA]
¢þ
>WENV170687472
LFRM01194099
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3591
3667
+
Met
CAT
[ENA]
¢þ
>WENV170967636
MTKW01002544
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
16014
16090
+
Met
CAT
[ENA]
¢þ
>WENV170968131
MTKW01006665
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5469
5545
+
Met
CAT
[ENA]
¢þ
>WENV170968559
MTKW01011371
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6886
6810
-
Met
CAT
[ENA]
¢þ
>WENV170969784
MTKW01039368
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1392
1316
-
Met
CAT
[ENA]
¢þ
>WENV170970477
MTKW01072562
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1
77
+
Met
CAT
[ENA]
¢þ
>C191108146
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
61967
61891
-
Met
CAT
-
¡û
>W09133513
ACPF01000002
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
20628
20704
+
Met
CAT
[ENA]
¡û
>W09134135
ACQZ01000015
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
10865
10789
-
Met
CAT
[ENA]
¡û
>W09135043
ACVH01000010
Bacillota
Thermoanaerobacter italicus Ab9 [ACVH]
43965
44041
+
Met
CAT
[ENA]
¡û
>W09135144
ACVK01000004
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [ACVK]
77494
77570
+
Met
CAT
[ENA]
¡û
>W09135844
ACXP01000005
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
81399
81475
+
Met
CAT
[ENA]
¡û
>C151045309
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
2089412
2089336
-
Met
CAT
[Ensembl]
¡û
>W10105949
ACXY01000026
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
20591
20667
+
Met
CAT
[ENA]
¡û
>W10120468
ADXD01000002
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
60632
60708
+
Met
CAT
[ENA]
¡û
>C10113393
CP001936
Bacillota
Thermoanaerobacter italicus Ab9 [CP001936]
2169111
2169035
-
Met
CAT
[Ensembl]
¡û
>C10113447
CP002032
Bacillota
Thermoanaerobacter mathranii subsp. mathranii str. A3 [CP002032]
2058696
2058620
-
Met
CAT
[Ensembl]
¡û
>W11108272
ACXY01000026
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
20591
20667
+
Met
CAT
[ENA]
¡û
>W1511275102
JOOI01000002
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
768002
768078
+
Met
CAT
[ENA]
¡û
>C11122458
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
290263
290339
+
Met
CAT
[Ensembl]
¡û
>C11122720
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
2184851
2184775
-
Met
CAT
[Ensembl]
¡û
>C11123244
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
2477419
2477343
-
Met
CAT
[Ensembl]
¡û
>W11127077
ADXD01000002
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
60632
60708
+
Met
CAT
[ENA]
¡û
>W11152689
AEYS01000042
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
1331
1255
-
Met
CAT
[ENA]
¡û
>W11152697
AEYS01000277
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
193
117
-
Met
CAT
[ENA]
¡û
>W121068086
AJUD01000007
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
194400
194324
-
Met
CAT
[ENA]
¡û
>W1610043671
BAZY01000023
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
30880
30956
+
Met
CAT
[ENA]
¡û
>W1610606296
LFST01000024
Bacillota
Candidatus Fermentithermobacillaceae bacterium DTU015 DTU015 [LFST]
3591
3667
+
Met
CAT
[ENA]
¡û
>W1610612274
LGEO01000011
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
47813
47889
+
Met
CAT
[ENA]
¡û
>W1610613195
LGFN01000219
Bacillota
Caldanaerobacter subterraneus [LGFN]
161
85
-
Met
CAT
[ENA]
¡û
>W1710040831
BAZY01000023
Bacillota
Thermoanaerobacter thermocopriae JCM 7501 [BAZY]
30880
30956
+
Met
CAT
[ENA]
¡û
>W1710515306
FNBS01000016
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
12877
12801
-
Met
CAT
[ENA]
¡û
>W1710523831
FNIG01000008
Bacillota
Tenuibacillus multivorans [FNIG]
137848
137772
-
Met
CAT
[ENA]
¡û
>W1710523834
FNIG01000010
Bacillota
Tenuibacillus multivorans [FNIG]
82
158
+
Met
CAT
[ENA]
¡û
>W1710560390
FONI01000055
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
7229
7153
-
Met
CAT
[ENA]
¡û
>W1710573023
FOXD01000004
Bacillota
Salibacterium halotolerans [FOXD]
6250
6326
+
Met
CAT
[ENA]
¡û
>W1710583311
FQUR01000011
Bacillota
Thermoanaerobacter uzonensis DSM 18761 [FQUR]
153665
153741
+
Met
CAT
[ENA]
¡û
>W1710727583
LFST01000024
Bacillota
Candidatus Fermentithermobacillaceae bacterium DTU015 DTU015 [LFST]
3591
3667
+
Met
CAT
[ENA]
¡û
>W1710733780
LGEO01000011
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
47813
47889
+
Met
CAT
[ENA]
¡û
>W1710734402
LGFN01000219
Bacillota
Caldanaerobacter subterraneus [LGFN]
161
85
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK