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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182786 (29 seq.)
>W1711096449
LTHT01000114
Fusobacteriota
Fusobacterium sp. HMSC073F01 [LTHT]
13750
13826
+
Met
CAT
[ENA]
¡û
>W131228142
AUFS01000001
Fusobacteriota
Psychrilyobacter atlanticus DSM 19335 [AUFS]
90433
90357
-
Met
CAT
[ENA]
¡û
>WENV180154124
OAUS01015883
[OAUS] human gut metagenome; faeces
333
257
-
Ile2
CAT
[ENA]
¢þ
>WENV181363680
OFOU01001328
[OFOU] human gut metagenome; human gut
134
58
-
Ile2
CAT
[ENA]
¢þ
>WENV181507748
OGGP01000801
[OGGP] metagenome; Human gut stool
439
363
-
Ile2
CAT
[ENA]
¢þ
>WENV181573543
OGJR01019145
[OGJR] metagenome; Human gut stool
235
311
+
Ile2
CAT
[ENA]
¢þ
>WENV181627817
OGMN01006826
[OGMN] metagenome; Human gut stool
257
333
+
Ile2
CAT
[ENA]
¢þ
>W141171011
AXZF01000209
Fusobacteriota
Cetobacterium somerae ATCC BAA-474 [AXZF]
37
113
+
Met
CAT
[ENA]
¡û
>WENV181892574
OGXP01002895
[OGXP] human gut metagenome; faeces
6388
6312
-
Ile2
CAT
[ENA]
¢þ
>WENV181948304
OGZE01001319
[OGZE] human gut metagenome; faeces
1210
1134
-
Ile2
CAT
[ENA]
¢þ
>WENV181958926
OGZM01000847
[OGZM] human gut metagenome; faeces
16837
16913
+
Ile2
CAT
[ENA]
¢þ
>WENV183760878
PPYE01241218
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
1182
1106
-
Ile2
CAT
[ENA]
¢þ
>WENV183764010
PPYE01311727
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
342
266
-
Ile2
CAT
[ENA]
¢þ
>WENV170695683
LGVE01153382
[LGVE] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
484
408
-
Met
CAT
[ENA]
¢þ
>WENV170698800
LGVF01419184
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
130
206
+
Met
CAT
[ENA]
¢þ
>C181003904
AP017968
Fusobacteriota
Fusobacterium varium Fv113-g1 [AP017968]
304179
304255
+
Met
CAT
-
¡û
>C181161029
CP028103
Fusobacteriota
Fusobacterium varium ATCC 27725 [CP028103]
802421
802345
-
Met
CAT
-
¡û
>C181216783
LS483487
Fusobacteriota
Fusobacterium ulcerans NCTC12112 [LS483487]
3088589
3088513
-
Met
CAT
-
¡û
>C191210200
LR134390
Fusobacteriota
Fusobacterium varium NCTC10560 [LR134390]
25436
25512
+
Met
CAT
-
¡û
>C191219292
LR215979
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [LR215979]
2930303
2930227
-
Met
CAT
-
¡û
>W09118795
ACDH01000056
Fusobacteriota
Fusobacterium ulcerans ATCC 49185 [ACDH]
13674
13750
+
Met
CAT
[ENA]
¡û
>W09125166
ACIE01000012
Fusobacteriota
Fusobacterium varium ATCC 27725 [ACIE]
13716
13792
+
Met
CAT
[ENA]
¡û
>W1810780093
QQOU01000011
Fusobacteriota
Psychrilyobacter sp. S5 [QQOU]
81027
80951
-
Met
CAT
[ENA]
¡û
>W1810818416
QSDE01000047
Fusobacteriota
Fusobacterium ulcerans OF01-15LB [QSDE]
1322
1246
-
Met
CAT
[ENA]
¡û
>W1810832252
QSOW01000047
Fusobacteriota
Fusobacterium varium TM07-10 [QSOW]
137
61
-
Met
CAT
[ENA]
¡û
>W1810870095
QUAJ01000011
Fusobacteriota
Psychrilyobacter piezotolerans SD5 [QUAJ]
81027
80951
-
Met
CAT
[ENA]
¡û
>W121021758
AGWJ01000050
Fusobacteriota
Fusobacterium ulcerans 12_1B [AGWJ]
1625
1549
-
Met
CAT
[ENA]
¡û
>W1710600961
FUWX01000007
Fusobacteriota
Cetobacterium ceti [FUWX]
163061
163137
+
Met
CAT
[ENA]
¡û
>W1710601017
FUWX01000045
Fusobacteriota
Cetobacterium ceti [FUWX]
176
100
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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