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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182852 (87 seq.)
>A171000774
CP001688
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [CP001688]
1865887
1865960
+
Thr
CGT
-
¡û
>A171001322
CP001932
Euryarchaeota
Natrialba magadii ATCC 43099 [CP001932]
913672
913599
-
Thr
CGT
-
¡û
>A171002453
CP002839
Euryarchaeota
Halopiger xanaduensis SH-6 [CP002839]
1728655
1728729
+
Thr
CGT
-
¡û
>A171002638
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
1909928
1909855
-
Thr
CGT
-
¡û
>A171002706
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
2017864
2017938
+
Thr
CGT
-
¡û
>A171003080
CP003377
Euryarchaeota
Natronobacterium gregoryi SP2 [CP003377]
99575
99648
+
Thr
CGT
-
¡û
>A171003163
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
1574542
1574615
+
Thr
CGT
-
¡û
>A171003490
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
2608552
2608479
-
Thr
CGT
-
¡û
>A171004157
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
692717
692644
-
Thr
CGT
-
¡û
>A171005828
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
512670
512596
-
Thr
CGT
-
¡û
>A171006863
CP019067
Euryarchaeota
Halorientalis sp. IM1011 [CP019067]
2773436
2773509
+
Thr
CGT
-
¡û
>A171006937
CP019285
Euryarchaeota
Halobiforma lacisalsi AJ5 [CP019285]
1850164
1850091
-
Thr
CGT
-
¡û
>A171006983
CP019327
Euryarchaeota
Natronorubrum daqingense JX313 [CP019327]
1947000
1946927
-
Thr
CGT
-
¡û
>WENV180273592
OBEU01000233
[OBEU] marine metagenome; marine
1550
1477
-
Thr
CGT
[ENA]
¢þ
>WENV180318571
OBKM01002166
[OBKM] metagenome; water
116
43
-
Thr
CGT
[ENA]
¢þ
>WENV180318610
OBKM01002787
[OBKM] metagenome; water
85
158
+
Thr
CGT
[ENA]
¢þ
>WENV180318650
OBKM01003596
[OBKM] metagenome; water
371
298
-
Thr
CGT
[ENA]
¢þ
>At0778
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
1247215
1247142
-
Thr
CGT
[Ensembl]
¡û
>WENV170702250
LKMJ01001070
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
23204
23277
+
Thr
CGT
[ENA]
¢þ
>WENV170703264
LKMJ01008633
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1099
1175
+
Thr
CGT
[ENA]
¢þ
>WENV170703602
LKMJ01014452
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6567
6641
+
Thr
CGT
[ENA]
¢þ
>WENV170704125
LKMJ01023201
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
76
3
-
Thr
CGT
[ENA]
¢þ
>W1910175115
BIXZ01000004
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
162848
162921
+
Thr
CGT
[ENA]
¡û
>W1910226898
FNFE01000001
Euryarchaeota
Natronorubrum texcoconense B4,CECT 8067,JCM 17497 [FNFE]
496931
497004
+
Thr
CGT
[ENA]
¡û
>W1910227155
FNLC01000004
Euryarchaeota
Natronobacterium texcoconense DSM 24767 [FNLC]
190784
190710
-
Thr
CGT
[ENA]
¡û
>W1910228401
FNOF01000014
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
27036
27109
+
Thr
CGT
[ENA]
¡û
>W1910229331
FNWL01000002
Euryarchaeota
Natronorubrum sediminis CGMCC 1.8981 [FNWL]
906714
906641
-
Thr
CGT
[ENA]
¡û
>W1910229710
FOCX01000022
Euryarchaeota
Halorientalis persicus IBRC-M 10043 [FOCX]
50642
50715
+
Thr
CGT
[ENA]
¡û
>W1910229826
FOFD01000008
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
86036
85963
-
Thr
CGT
[ENA]
¡û
>W1910229880
FOIC01000002
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
35402
35475
+
Thr
CGT
[ENA]
¡û
>W1910229950
FOIS01000003
Euryarchaeota
Natrinema salifodinae CGMCC 1.12284 [FOIS]
181761
181688
-
Thr
CGT
[ENA]
¡û
>W1910230238
FOKW01000002
Euryarchaeota
Halobiforma haloterrestris DSM 13078 [FOKW]
515272
515199
-
Thr
CGT
[ENA]
¡û
>W1910230438
FORO01000007
Euryarchaeota
Natronobacterium gregoryi SP2 [FORO]
78960
78887
-
Thr
CGT
[ENA]
¡û
>W1910230853
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
799416
799489
+
Thr
CGT
[ENA]
¡û
>W1910340505
FTNP01000002
Euryarchaeota
Natronorubrum daqingense CGMCC 1.8909 [FTNP]
358223
358150
-
Thr
CGT
[ENA]
¡û
>W1910340549
FTNR01000008
Euryarchaeota
Natronorubrum thiooxidans type strain: HArc- [FTNR]
91968
91895
-
Thr
CGT
[ENA]
¡û
>W1910568549
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
929898
929972
+
Thr
CGT
[ENA]
¡û
>W1910572568
JMIP02000017
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
225849
225922
+
Thr
CGT
[ENA]
¡û
>W1910572692
JNCS01000001
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
16874
16947
+
Thr
CGT
[ENA]
¡û
>W1910575891
JROF01000026
Euryarchaeota
Natrinema salifodinae KCY07-B2 [JROF]
49715
49788
+
Thr
CGT
[ENA]
¡û
>W1910583000
JXAN01000004
Euryarchaeota
Natrinema altunense 1A4-DGR [JXAN]
76180
76253
+
Thr
CGT
[ENA]
¡û
>W1910583046
JXAO01000009
Euryarchaeota
Haloarcula argentinensis H5-DGR [JXAO]
12234
12308
+
Thr
CGT
[ENA]
¡û
>W1910617609
LIUF01000005
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
167717
167790
+
Thr
CGT
[ENA]
¡û
>W1910646147
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
722914
722841
-
Thr
CGT
[ENA]
¡û
>W1910657578
MASN01000052
Euryarchaeota
Natrialba sp. SSL1 [MASN]
282910
282984
+
Thr
CGT
[ENA]
¡û
>W1910826089
MWPH01000001
Euryarchaeota
Natronolimnobius baerhuensis CGMCC 1.3597 [MWPH]
603980
603906
-
Thr
CGT
[ENA]
¡û
>W1911433993
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
2784535
2784462
-
Thr
CGT
[ENA]
¡û
>W1911591329
PKKI01000010
Euryarchaeota
Natronobacterium gregoryi SP2 [PKKI]
78327
78254
-
Thr
CGT
[ENA]
¡û
>W1911709459
QPLN01000001
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
88562
88489
-
Thr
CGT
[ENA]
¡û
>W1911709596
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
88726
88653
-
Thr
CGT
[ENA]
¡û
>W1911709972
QPND01000006
Euryarchaeota
Saliphagus sp. LR7 [QPND]
217672
217745
+
Thr
CGT
[ENA]
¡û
>W1911770049
QXIK01000010
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
68800
68873
+
Thr
CGT
[ENA]
¡û
>W1610000812
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
1860829
1860756
-
Thr
CGT
[ENA]
¡û
>W1610004111
AGIM01000013
Euryarchaeota
Natronobacterium gregoryi SP2 [AGIM]
71505
71578
+
Thr
CGT
[ENA]
¡û
>W1610005358
AJVG01000002
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
111508
111581
+
Thr
CGT
[ENA]
¡û
>W1610011736
AOHS01000054
Euryarchaeota
Natrialba magadii ATCC 43099 MS-3 [AOHS]
106768
106695
-
Thr
CGT
[ENA]
¡û
>W1610011915
AOHW01000033
Euryarchaeota
Natronorubrum tibetense GA33 [AOHW]
84804
84877
+
Thr
CGT
[ENA]
¡û
>W1610011946
AOHX01000026
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
138404
138331
-
Thr
CGT
[ENA]
¡û
>W1610011980
AOHY01000007
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
148276
148203
-
Thr
CGT
[ENA]
¡û
>W1610012149
AOIB01000043
Euryarchaeota
Natronococcus amylolyticus DSM 10524 [AOIB]
36516
36443
-
Thr
CGT
[ENA]
¡û
>W1610012176
AOIC01000085
Euryarchaeota
Natronobacterium gregoryi SP2 [AOIC]
19020
19093
+
Thr
CGT
[ENA]
¡û
>W1610012208
AOID01000028
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
39814
39738
-
Thr
CGT
[ENA]
¡û
>W1610012307
AOII01000073
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
30554
30480
-
Thr
CGT
[ENA]
¡û
>W1610012334
AOIJ01000040
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
10499
10572
+
Thr
CGT
[ENA]
¡û
>W1610012386
AOIK01000025
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
185600
185527
-
Thr
CGT
[ENA]
¡û
>W1610012420
AOIL01000013
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
284155
284228
+
Thr
CGT
[ENA]
¡û
>W1610012467
AOIM01000014
Euryarchaeota
Natrialba hulunbeirensis JCM 10989 [AOIM]
76532
76605
+
Thr
CGT
[ENA]
¡û
>W1610012530
AOIN01000080
Euryarchaeota
Natrialba chahannaoensis JCM 10990 [AOIN]
85012
85088
+
Thr
CGT
[ENA]
¡û
>W1610012542
AOIO01000018
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
2848
2775
-
Thr
CGT
[ENA]
¡û
>W1610012612
AOIP01000031
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
511301
511374
+
Thr
CGT
[ENA]
¡û
>W1610012655
AOIQ01000021
Euryarchaeota
Halovivax asiaticus JCM 14624 [AOIQ]
384526
384452
-
Thr
CGT
[ENA]
¡û
>W1610012727
AOIS01000036
Euryarchaeota
Haloterrigena salina JCM 13891 [AOIS]
40506
40579
+
Thr
CGT
[ENA]
¡û
>W1610012781
AOIT01000031
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
44305
44232
-
Thr
CGT
[ENA]
¡û
>W1610014133
AOLQ01000025
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
26941
27014
+
Thr
CGT
[ENA]
¡û
>W1610014165
AOLR01000002
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
82382
82309
-
Thr
CGT
[ENA]
¡û
>W1610014290
AOLW01000050
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
107487
107560
+
Thr
CGT
[ENA]
¡û
>W1610014343
AOLX01000027
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
179533
179606
+
Thr
CGT
[ENA]
¡û
>W1610014378
AOLY01000009
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
261419
261492
+
Thr
CGT
[ENA]
¡û
>W1610014437
AOLZ01000072
Euryarchaeota
Halobiforma lacisalsi AJ5 [AOLZ]
33151
33078
-
Thr
CGT
[ENA]
¡û
>W1610019028
ARPH01000005
Euryarchaeota
Natronorubrum tibetense GA33 [ARPH]
802637
802710
+
Thr
CGT
[ENA]
¡û
>W1610046854
BBCV01000024
Euryarchaeota
Natronolimnobius baerhuensis JCM 12253 [BBCV]
34967
34893
-
Thr
CGT
[ENA]
¡û
>W1610061923
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
1231020
1230946
-
Thr
CGT
[ENA]
¡û
>W1610082970
CBMA010000011
Euryarchaeota
Halopiger djelfimassiliensis IIH2 [CBMA]
129984
129911
-
Thr
CGT
[ENA]
¡û
>W1610671373
LKCV01000082
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
8061
8135
+
Thr
CGT
[ENA]
¡û
>W1610671394
LKCV01000412
Euryarchaeota
Haloterrigena turkmenica WANU15 [LKCV]
473
397
-
Thr
CGT
[ENA]
¡û
>W1610682138
LKMK01000084
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g2 [LKMK]
5896
5970
+
Thr
CGT
[ENA]
¡û
>W1610881016
LRHL01000011
Euryarchaeota
Haloarcula sp. K1 [LRHL]
70650
70577
-
Thr
CGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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