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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182878 (38 seq.)
>W131221412
AUAL01000017
Mycoplasmatota
Haploplasma axanthum ATCC 25176 [AUAL]
3699
3775
+
Met
CAT
[ENA]
¡û
>W1711423284
MICP01000096
Mycoplasmatota
Tenericutes bacterium GWA2_35_7 [MICP]
3492
3568
+
Met
CAT
[ENA]
¡û
>W1711423308
MICQ01000049
Mycoplasmatota
Tenericutes bacterium GWA2_38_26 [MICQ]
4622
4546
-
Met
CAT
[ENA]
¡û
>W1711423334
MICR01000008
Mycoplasmatota
Tenericutes bacterium GWC2_34_14 [MICR]
82336
82260
-
Met
CAT
[ENA]
¡û
>W1711423382
MICT01000068
Mycoplasmatota
Tenericutes bacterium GWD2_38_27 [MICT]
671
747
+
Met
CAT
[ENA]
¡û
>W1711423414
MICU01000006
Mycoplasmatota
Tenericutes bacterium GWE2_34_108 [MICU]
82369
82293
-
Met
CAT
[ENA]
¡û
>W1711423478
MICW01000017
Mycoplasmatota
Tenericutes bacterium GWF1_35_14 [MICW]
82387
82311
-
Met
CAT
[ENA]
¡û
>W1711423507
MICX01000008
Mycoplasmatota
Tenericutes bacterium GWF2_35_184 [MICX]
82408
82332
-
Met
CAT
[ENA]
¡û
>W1711423627
MIDB01000020
Mycoplasmatota
Tenericutes bacterium RIFOXYA2_FULL_36_32 [MIDB]
82403
82327
-
Met
CAT
[ENA]
¡û
>W1711423637
MIDC01000002
Mycoplasmatota
Tenericutes bacterium RIFOXYB2_FULL_36_25 [MIDC]
82399
82323
-
Met
CAT
[ENA]
¡û
>W1711423701
MIDD01000014
Mycoplasmatota
Tenericutes bacterium RIFOXYC2_FULL_35_27 [MIDD]
82390
82314
-
Met
CAT
[ENA]
¡û
>W1711423736
MIDE01000046
Mycoplasmatota
Tenericutes bacterium RIFOXYD12_FULL_36_9 [MIDE]
82328
82252
-
Met
CAT
[ENA]
¡û
>W1711423755
MIDF01000008
Mycoplasmatota
Tenericutes bacterium RIFOXYD2_FULL_35_11 [MIDF]
690
766
+
Met
CAT
[ENA]
¡û
>WENV180097536
MTBK01194793
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
258
334
+
Ile2
CAT
[ENA]
¢þ
>WENV180297251
OBJA01017119
[OBJA] soil metagenome; sediment, water from around vicinity
626
702
+
Ile2
CAT
[ENA]
¢þ
>WENV180365255
OBOB01049588
[OBOB] marine metagenome; ENVO:00002019, 'BRACKISH WATER
406
482
+
Ile2
CAT
[ENA]
¢þ
>WENV180589237
OCOR01014287
[OCOR] marine metagenome; ENVO:00002042
407
331
-
Ile2
CAT
[ENA]
¢þ
>WENV180593745
OCOX01175962
[OCOX] marine metagenome; ENVO:00002010
81
5
-
Ile2
CAT
[ENA]
¢þ
>WENV181231070
OFEK01009107
[OFEK] activated sludge metagenome; Anaerobic digester
2748
2672
-
Ile2
CAT
[ENA]
¢þ
>WENV170005306
AMCI01001861
[AMCI] gut metagenome; fecal sample from gut
892
816
-
Met
CAT
[ENA]
¢þ
>WENV170470701
CEVG01004371
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
544
468
-
Met
CAT
[ENA]
¢þ
>WENV170474960
CEVH01188393
[CEVH] marine metagenome genome assembly TARA_141_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
485
409
-
Met
CAT
[ENA]
¢þ
>WENV170618576
FUWD012976656
[FUWD] metagenome; unknown
253
177
-
Met
CAT
[ENA]
¢þ
>WENV170624045
FUWD013174325
[FUWD] metagenome; unknown
927
1003
+
Met
CAT
[ENA]
¢þ
>WENV170632333
FUWD013380716
[FUWD] metagenome; unknown
927
1003
+
Met
CAT
[ENA]
¢þ
>WENV170635830
JDSH01015703
[JDSH] bioreactor metagenome; continuous culture bioreactor electron acceptor NO2- transfer2; day 38 after inoculation
5
81
+
Met
CAT
[ENA]
¢þ
>WENV170643303
JFJP01052798
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
694
770
+
Met
CAT
[ENA]
¢þ
>WENV170646455
JQGR01007851
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
480
404
-
Met
CAT
[ENA]
¢þ
>WENV170805502
MDSW01065692
[MDSW] marine metagenome; seawater
193228
193304
+
Met
CAT
[ENA]
¢þ
>WENV170969067
MTKW01019797
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
5354
5430
+
Met
CAT
[ENA]
¢þ
>C181029191
CP017948
Mycoplasmatota
Tenericutes bacterium MO-XQ [CP017948]
231199
231275
+
Met
CAT
-
¡û
>C181029227
CP017950
Mycoplasmatota
Tenericutes bacterium MZ-XQ [CP017950]
211034
211110
+
Met
CAT
-
¡û
>C191218831
LR215048
Mycoplasmatota
Haploplasma axanthum NCTC10138 [LR215048]
55015
54939
-
Met
CAT
-
¡û
>W141561006
JHYB01000004
Mycoplasmatota
Haploplasma modicum ATCC 29102 [JHYB]
154920
154844
-
Met
CAT
[ENA]
¡û
>C141012118
FO681347
Mycoplasmatota
Alteracholeplasma palmae J233 [FO681347]
1458994
1458918
-
Met
CAT
[Ensembl]
¡û
>C141012139
FO681348
Mycoplasmatota
Paracholeplasma brassicae O502 [FO681348]
265954
266030
+
Met
CAT
[Ensembl]
¡û
>WENV045828
AACY022551233
Marine microbial communities from Global Ocean Sampling (GOS)
135
213
+
Met
CAT
[ENA]
>WENV009932
AACY020267251
Marine microbial communities from Global Ocean Sampling (GOS)
919
841
-
Met
CAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK