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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.182996 (27 seq.)
>C024995
CP000448
Bacillota
Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 [CP000448]
14445
14521
+
Arg
ACG
[Ensembl]
¡û
>WENV180095005
MTBK01043278
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
445
369
-
Arg
ACG
[ENA]
¢þ
>WENV170562144
CZCB01001082
[CZCB] anaerobic digester metagenome; anaerobic digester
23386
23462
+
Arg
ACG
[ENA]
¢þ
>WENV170658771
JUEG02000521
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
7268
7192
-
Arg
ACG
[ENA]
¢þ
>WENV170718808
LSQX01091235
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
34315
34391
+
Arg
ACG
[ENA]
¢þ
>WENV170725882
LSQX01359533
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2700
2624
-
Arg
ACG
[ENA]
¢þ
>WENV170969888
MTKW01043069
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1036
960
-
Arg
ACG
[ENA]
¢þ
>WENV170970350
MTKW01064307
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
252
328
+
Arg
ACG
[ENA]
¢þ
>C181166353
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
2162677
2162601
-
Arg
ACG
-
¡û
>C181166364
CP028491
Bacillota
Carboxydocella thermautotrophica 019 [CP028491]
251254
251178
-
Arg
ACG
-
¡û
>C181166427
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
2205325
2205249
-
Arg
ACG
-
¡û
>C181166438
CP028514
Bacillota
Carboxydocella thermautotrophica 41 [CP028514]
251885
251809
-
Arg
ACG
-
¡û
>W09103487
AAJG01000012
Bacillota
Syntrophomonas wolfei subsp. wolfei str. Goettingen [AAJG]
54524
54600
+
Arg
ACG
[ENA]
¡û
>C10111804
CP002048
Bacillota
Syntrophothermus lipocalidus DSM 12680 [CP002048]
15018
15094
+
Arg
ACG
[Ensembl]
¡û
>C10113230
CP002028
Bacillota
Thermincola potens JR [CP002028]
17969
18045
+
Arg
ACG
[Ensembl]
¡û
>W1511706133
LGTE01000029
Bacillota
Thermincola ferriacetica Z-0001 [LGTE]
9827
9751
-
Arg
ACG
[ENA]
¡û
>W1610046224
BBCE01000013
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
14678
14602
-
Arg
ACG
[ENA]
¡û
>W1610053805
BBQT01000002
Bacillota
Syntrophomonas wolfei subsp. methylbutyratica [BBQT]
24172
24096
-
Arg
ACG
[ENA]
¡û
>W1710043020
BBCE01000013
Bacillota
Syntrophomonas palmitatica JCM 14374 [BBCE]
14678
14602
-
Arg
ACG
[ENA]
¡û
>W1710050183
BBQT01000002
Bacillota
Syntrophomonas wolfei subsp. methylbutyratica [BBQT]
24172
24096
-
Arg
ACG
[ENA]
¡û
>W1710084327
BDLQ01000016
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
1349
1273
-
Arg
ACG
[ENA]
¡û
>W1710084355
BDLQ01000058
Bacillota
Carboxydocella sp. ULO1 [BDLQ]
64827
64903
+
Arg
ACG
[ENA]
¡û
>W1710084390
BDLR01000034
Bacillota
Carboxydocella sp. JDF658 [BDLR]
24916
24840
-
Arg
ACG
[ENA]
¡û
>W1710084410
BDLR01000037
Bacillota
Carboxydocella sp. JDF658 [BDLR]
1340
1264
-
Arg
ACG
[ENA]
¡û
>W1710586151
FQWY01000045
Bacillota
Thermosyntropha lipolytica DSM 11003 [FQWY]
5107
5183
+
Arg
ACG
[ENA]
¡û
>W1710601654
FUXM01000004
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
85627
85551
-
Arg
ACG
[ENA]
¡û
>W1710601681
FUXM01000055
Bacillota
Carboxydocella sporoproducens DSM 16521 [FUXM]
11492
11416
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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