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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183433 (44 seq.)
>W1711050756
LRRQ01000112
Verrucomicrobiota
Opitutaceae bacterium TSB47 [LRRQ]
18142
18066
-
Ile
GAT
[ENA]
¡û
>C171046057
CP016094
Verrucomicrobiota
Lacunisphaera limnophila IG16b [CP016094]
2555951
2556027
+
Ile
GAT
-
¡û
>WENV180027706
FTIZ01034625
[FTIZ] metagenome; soil
550
474
-
Ile
GAT
[ENA]
¢þ
>WENV180038838
LLBY010007852
[LLBY] soil metagenome; soil from tomato rhizosphere
380
456
+
Ile
GAT
[ENA]
¢þ
>WENV180110835
OAPN01008978
[OAPN] marine metagenome; 2011
655
579
-
Ile
GAT
[ENA]
¢þ
>WENV180257190
OBEQ010888843
[OBEQ] groundwater metagenome; groundwater
29
105
+
Ile
GAT
[ENA]
¢þ
>WENV180269754
OBEQ012097112
[OBEQ] groundwater metagenome; groundwater
308
232
-
Ile
GAT
[ENA]
¢þ
>WENV180295939
OBIZ01465819
[OBIZ] soil metagenome; soil
191
115
-
Ile
GAT
[ENA]
¢þ
>WENV180356532
OBNK01043755
[OBNK] sediment metagenome; sediment
200
276
+
Ile
GAT
[ENA]
¢þ
>WENV180694379
OCZS012258187
[OCZS] soil metagenome; soil
151
75
-
Ile
GAT
[ENA]
¢þ
>WENV181165885
OEIS01256802
[OEIS] soil metagenome; soil
28
104
+
Ile
GAT
[ENA]
¢þ
>WENV181192880
OEPS011155845
[OEPS] soil metagenome; soil
124
200
+
Ile
GAT
[ENA]
¢þ
>WENV181838964
OGVN01042678
[OGVN] freshwater metagenome; freshwater
377
453
+
Ile
GAT
[ENA]
¢þ
>WENV181839697
OGVO01007392
[OGVO] freshwater metagenome; freshwater
943
1019
+
Ile
GAT
[ENA]
¢þ
>WENV181842934
OGVT01043087
[OGVT] freshwater metagenome; freshwater
267
191
-
Ile
GAT
[ENA]
¢þ
>WENV181844270
OGVV01032374
[OGVV] freshwater metagenome; freshwater
198
274
+
Ile
GAT
[ENA]
¢þ
>WENV181844995
OGVW01062669
[OGVW] freshwater metagenome; freshwater
136
212
+
Ile
GAT
[ENA]
¢þ
>C08007073
CP001032
Verrucomicrobiota
Opitutus terrae PB90-1 [CP001032]
2053147
2053223
+
Ile
GAT
[Ensembl]
¡û
>WENV183670634
ORJL010966104
[ORJL] groundwater metagenome; groundwater
79
3
-
Ile
GAT
[ENA]
¢þ
>WENV183676811
ORJL011671577
[ORJL] groundwater metagenome; groundwater
3501
3425
-
Ile
GAT
[ENA]
¢þ
>WENV183679345
ORMF010048930
[ORMF] groundwater metagenome; groundwater
1267
1343
+
Ile
GAT
[ENA]
¢þ
>WENV183686068
ORMF010947324
[ORMF] groundwater metagenome; groundwater
37
113
+
Ile
GAT
[ENA]
¢þ
>WENV183692289
ORMF011894281
[ORMF] groundwater metagenome; groundwater
347
271
-
Ile
GAT
[ENA]
¢þ
>WENV183697352
OUNJ010479846
[OUNJ] metagenome; soil
156
232
+
Ile
GAT
[ENA]
¢þ
>WENV183748510
PPFU01047517
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2886
2810
-
Ile
GAT
[ENA]
¢þ
>WENV170534976
CEWP01013911
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1350
1274
-
Ile
GAT
[ENA]
¢þ
>WENV170555916
CXWL01003141
[CXWL] groundwater metagenome; biofilm material
113939
113863
-
Ile
GAT
[ENA]
¢þ
>WENV170564301
CZKI01000047
[CZKI] soil metagenomic genome assembly CiPEHR-AK-2010-FBin.1, contig; soil
62310
62234
-
Ile
GAT
[ENA]
¢þ
>WENV170713449
LNFM01031804
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
3154
3078
-
Ile
GAT
[ENA]
¢þ
>WENV170961442
MLJW01000043
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
37395
37471
+
Ile
GAT
[ENA]
¢þ
>WENV170979433
MTKZ01089999
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
746
670
-
Ile
GAT
[ENA]
¢þ
>WENV170991236
MWWA01141523
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
250
326
+
Ile
GAT
[ENA]
¢þ
>C181079128
CP023344
Verrucomicrobiota
Nibricoccus aquaticus HZ-65 [CP023344]
2495978
2496054
+
Ile
GAT
-
¡û
>W1810487922
QAYX01000024
Verrucomicrobiota
Opitutus sp. ER46 [QAYX]
728992
729068
+
Ile
GAT
[ENA]
¡û
>W1810487936
QAYY01000001
Verrucomicrobiota
Opitutaceae bacterium EW11 [QAYY]
235196
235120
-
Ile
GAT
[ENA]
¡û
>C151016766
CP007053
Verrucomicrobiota
Opitutaceae bacterium TAV5 [CP007053]
2151351
2151275
-
Ile
GAT
[Ensembl]
¡û
>C151078857
CP011265
Verrucomicrobiota
Verrucomicrobia bacterium IMCC26134 [CP011265]
2720775
2720699
-
Ile
GAT
[Ensembl]
¡û
>C151078863
CP011265
Verrucomicrobiota
Verrucomicrobia bacterium IMCC26134 [CP011265]
1904624
1904548
-
Ile
GAT
[Ensembl]
¡û
>ENV09000632
ABSP01004731
Freshwater sediment metagenome lwMethane_C1
506
430
-
Ile
GAT
[ENA]
¡û
>W121010417
AGJF01000002
Verrucomicrobiota
Opitutaceae bacterium TAV5 [AGJF]
213073
212997
-
Ile
GAT
[ENA]
¡û
>W121034585
AHKS02000028
Verrucomicrobiota
Opitutaceae bacterium TAV1 [AHKS]
2470
2394
-
Ile
GAT
[ENA]
¡û
>W1610891885
LRRQ01000112
Verrucomicrobiota
Opitutaceae bacterium TSB47 [LRRQ]
18142
18066
-
Ile
GAT
[ENA]
¡û
>ENV000318
AF268430
Environmental sample from ENV division of INSDC
260
338
+
Ile
GAT
[ENA]
>ENV004258
DQ491459
Environmental sample from ENV division of INSDC
402
480
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK