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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183538 (93 seq.)
>W1711022841
LRAC01000012
Bacillota
Paenibacillus sp. DMB5 [LRAC]
789
865
+
Arg
ACG
[ENA]
¡û
>W1711022865
LRAC01000017
Bacillota
Paenibacillus sp. DMB5 [LRAC]
144289
144213
-
Arg
ACG
[ENA]
¡û
>W131171925
ARGO01000025
Bacillota
Paenibacillus sanguinis 2301083 = DSM 16941 [ARGO]
139724
139649
-
Arg
ACG
[ENA]
¡û
>W131195992
ASSZ01000010
Bacillota
Paenibacillus barengoltzii G22 [ASSZ]
2759
2834
+
Arg
ACG
[ENA]
¡û
>W1711501268
MKRK01000096
Bacillota
Clostridiales bacterium 43-6 [MKRK]
10896
10972
+
Arg
ACG
[ENA]
¡û
>W1711677580
MRTP01000052
Bacillota
Paenibacillus rhizosphaerae [MRTP]
169
96
-
Arg
ACG
[ENA]
¡û
>W1711678113
MRTY01000011
Bacillota
Paenibacillus sp. FSL R7-0273 [MRTY]
1114
1190
+
Arg
ACG
[ENA]
¡û
>W1711710756
MSZX01000002
Bacillota
Paenibacillus selenitireducens [MSZX]
4529
4605
+
Arg
ACG
[ENA]
¡û
>W1711710792
MSZX01000013
Bacillota
Paenibacillus selenitireducens [MSZX]
173639
173563
-
Arg
ACG
[ENA]
¡û
>W1712108616
NJDE01000008
Bacillota
Saccharibacillus sp. O23 [NJDE]
328835
328759
-
Arg
ACG
[ENA]
¡û
>C171030338
CP014167
Bacillota
Paenibacillus yonginensis DCY84 [CP014167]
3590877
3590801
-
Arg
ACG
-
¡û
>C171030368
CP014167
Bacillota
Paenibacillus yonginensis DCY84 [CP014167]
2964491
2964415
-
Arg
ACG
-
¡û
>W131171898
ARGO01000019
Bacillota
Paenibacillus sanguinis 2301083 = DSM 16941 [ARGO]
66741
66665
-
Arg
ACG
[ENA]
¡û
>W131176600
ARKE01000023
Bacillota
Paenibacillus daejeonensis DSM 15491 [ARKE]
1789
1865
+
Arg
ACG
[ENA]
¡û
>W131195960
ASSZ01000002
Bacillota
Paenibacillus barengoltzii G22 [ASSZ]
3645
3721
+
Arg
ACG
[ENA]
¡û
>W131251942
CBLK010000055
Bacillota
Paenibacillus antibioticophila GD11 [CBLK]
261007
260931
-
Arg
ACG
[ENA]
¡û
>W131251983
CBLK010000084
Bacillota
Paenibacillus antibioticophila GD11 [CBLK]
63743
63667
-
Arg
ACG
[ENA]
¡û
>W141263448
CCDG010000101
Bacillota
Paenibacillus camerounensis G4 [CCDG]
19443
19367
-
Arg
ACG
[ENA]
¡û
>WENV183726608
PJTO01000029
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
269068
268992
-
Arg
ACG
[ENA]
¢þ
>WENV183737118
PJUD01000495
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
18049
17973
-
Arg
ACG
[ENA]
¢þ
>C181169851
CP028922
Bacillota
Paenibacillus sp. CAA11 [CP028922]
4111370
4111294
-
Arg
ACG
-
¡û
>C181169871
CP028922
Bacillota
Paenibacillus sp. CAA11 [CP028922]
3914881
3914805
-
Arg
ACG
-
¡û
>C181169883
CP028922
Bacillota
Paenibacillus sp. CAA11 [CP028922]
3614294
3614218
-
Arg
ACG
-
¡û
>C181169897
CP028922
Bacillota
Paenibacillus sp. CAA11 [CP028922]
3360747
3360671
-
Arg
ACG
-
¡û
>C191007140
AP019308
Bacillota
Paenibacillus baekrokdamisoli KCTC 33723 [AP019308]
6817803
6817879
+
Arg
ACG
-
¡û
>C191123444
CP034346
Bacillota
Paenibacillus lutimineralis MBLB1234 [CP034346]
348007
348083
+
Arg
ACG
-
¡û
>C191123461
CP034346
Bacillota
Paenibacillus lutimineralis MBLB1234 [CP034346]
1099776
1099852
+
Arg
ACG
-
¡û
>C191123484
CP034346
Bacillota
Paenibacillus lutimineralis MBLB1234 [CP034346]
5636477
5636401
-
Arg
ACG
-
¡û
>C191123504
CP034346
Bacillota
Paenibacillus lutimineralis MBLB1234 [CP034346]
5448147
5448071
-
Arg
ACG
-
¡û
>C191123514
CP034346
Bacillota
Paenibacillus lutimineralis MBLB1234 [CP034346]
5198780
5198704
-
Arg
ACG
-
¡û
>W09125264
ACIH01000095
Bacillota
Paenibacillus sp. oral taxon 786 oral taxon 786 str. D14 [ACIH]
3373
3298
-
Arg
ACG
[ENA]
¡û
>W09125310
ACIH01000224
Bacillota
Paenibacillus sp. oral taxon 786 oral taxon 786 str. D14 [ACIH]
12160
12084
-
Arg
ACG
[ENA]
¡û
>W1910154546
BILV01000016
Bacillota
Paenibacillus barengoltzii NBRC 101215 [BILV]
91073
90998
-
Arg
ACG
[ENA]
¡û
>W1910154576
BILV01000064
Bacillota
Paenibacillus barengoltzii NBRC 101215 [BILV]
355
431
+
Arg
ACG
[ENA]
¡û
>W1910155233
BIMK01000022
Bacillota
Paenibacillus chibensis NBRC 15958 [BIMK]
43569
43494
-
Arg
ACG
[ENA]
¡û
>W1910663993
MBRK01000001
Bacillota
Paenibacillus sp. SSG-1 [MBRK]
7042159
7042235
+
Arg
ACG
[ENA]
¡û
>W1910664010
MBRK01000001
Bacillota
Paenibacillus sp. SSG-1 [MBRK]
7182457
7182533
+
Arg
ACG
[ENA]
¡û
>W1910664040
MBRK01000001
Bacillota
Paenibacillus sp. SSG-1 [MBRK]
4893916
4893840
-
Arg
ACG
[ENA]
¡û
>W1910664052
MBRK01000001
Bacillota
Paenibacillus sp. SSG-1 [MBRK]
4390848
4390775
-
Arg
ACG
[ENA]
¡û
>W1910827181
MWSG01000022
Bacillota
Cohnella sp. CIP 111063 [MWSG]
156261
156185
-
Arg
ACG
[ENA]
¡û
>W1911178855
NQMO01000002
Bacillota
Paenibacillus sp. XY044 [NQMO]
1669
1745
+
Arg
ACG
[ENA]
¡û
>W1911178889
NQMO01000013
Bacillota
Paenibacillus sp. XY044 [NQMO]
1075
1148
+
Arg
ACG
[ENA]
¡û
>W1911178900
NQMO01000014
Bacillota
Paenibacillus sp. XY044 [NQMO]
1181
1257
+
Arg
ACG
[ENA]
¡û
>W1911178914
NQMO01000018
Bacillota
Paenibacillus sp. XY044 [NQMO]
1653
1729
+
Arg
ACG
[ENA]
¡û
>W1810050160
PCZT01000001
Bacillota
Paenibacillus sp. AR247 [PCZT]
46827
46754
-
Arg
ACG
[ENA]
¡û
>W1810050176
PCZT01000005
Bacillota
Paenibacillus sp. AR247 [PCZT]
639
715
+
Arg
ACG
[ENA]
¡û
>W1810050231
PCZT01000115
Bacillota
Paenibacillus sp. AR247 [PCZT]
80
156
+
Arg
ACG
[ENA]
¡û
>W1810367704
PVYW01000022
Bacillota
Cohnella sp. SGD-V74 [PVYW]
156261
156185
-
Arg
ACG
[ENA]
¡û
>W1810759995
QPJW01000001
Bacillota
Fontibacillus phaseoli CECT 8333 [QPJW]
1149
1225
+
Arg
ACG
[ENA]
¡û
>W1810760053
QPJW01000012
Bacillota
Fontibacillus phaseoli CECT 8333 [QPJW]
946
1022
+
Arg
ACG
[ENA]
¡û
>W1810787543
QRDU01000001
Bacillota
Paenibacillus sp. VMFN-D1 [QRDU]
1461
1534
+
Arg
ACG
[ENA]
¡û
>W1810787566
QRDU01000002
Bacillota
Paenibacillus sp. VMFN-D1 [QRDU]
1599
1675
+
Arg
ACG
[ENA]
¡û
>W1810787594
QRDU01000008
Bacillota
Paenibacillus sp. VMFN-D1 [QRDU]
1
77
+
Arg
ACG
[ENA]
¡û
>W1810787598
QRDU01000013
Bacillota
Paenibacillus sp. VMFN-D1 [QRDU]
39786
39710
-
Arg
ACG
[ENA]
¡û
>W1810787831
QRDZ01000030
Bacillota
Cohnella phaseoli CECT 7287 [QRDZ]
1481
1557
+
Arg
ACG
[ENA]
¡û
>W1810860979
QTTN01000083
Bacillota
Paenibacillus taihuensis CGMCC 1.10966 [QTTN]
929
1005
+
Arg
ACG
[ENA]
¡û
>C151047877
CP009284
Bacillota
Paenibacillus sp. FSL R7-0331 [CP009284]
833762
833838
+
Arg
ACG
[Ensembl]
¡û
>W1510562733
CTEK01000007
Bacillota
Paenibacillus sp. GM2 [CTEK]
60609
60533
-
Arg
ACG
[ENA]
¡û
>W1510562747
CTEK01000014
Bacillota
Paenibacillus sp. GM2 [CTEK]
41585
41509
-
Arg
ACG
[ENA]
¡û
>W1510562769
CTEK01000032
Bacillota
Paenibacillus sp. GM2 [CTEK]
910
986
+
Arg
ACG
[ENA]
¡û
>W1510562801
CTEK01000046
Bacillota
Paenibacillus sp. GM2 [CTEK]
152989
152913
-
Arg
ACG
[ENA]
¡û
>W1510562806
CTEK01000046
Bacillota
Paenibacillus sp. GM2 [CTEK]
152488
152412
-
Arg
ACG
[ENA]
¡û
>W1511352083
JRNV01000058
Bacillota
Paenibacillus sp. P1XP2 [JRNV]
1462
1537
+
Arg
ACG
[ENA]
¡û
>W1511352088
JRNV01000074
Bacillota
Paenibacillus sp. P1XP2 [JRNV]
286
362
+
Arg
ACG
[ENA]
¡û
>W1511352106
JRNV01000138
Bacillota
Paenibacillus sp. P1XP2 [JRNV]
1076
1001
-
Arg
ACG
[ENA]
¡û
>W1511577241
LAQP01000010
Bacillota
Paenibacillus wulumuqiensis Y24 [LAQP]
660
736
+
Arg
ACG
[ENA]
¡û
>W1511577268
LAQP01000015
Bacillota
Paenibacillus wulumuqiensis Y24 [LAQP]
237171
237098
-
Arg
ACG
[ENA]
¡û
>W1511577278
LAQP01000017
Bacillota
Paenibacillus wulumuqiensis Y24 [LAQP]
154003
153927
-
Arg
ACG
[ENA]
¡û
>C161049756
CP013023
Bacillota
Paenibacillus bovis BD3526 [CP013023]
920283
920359
+
Arg
ACG
[Ensembl]
¡û
>C161049786
CP013023
Bacillota
Paenibacillus bovis BD3526 [CP013023]
5109102
5109026
-
Arg
ACG
[Ensembl]
¡û
>C161049805
CP013023
Bacillota
Paenibacillus bovis BD3526 [CP013023]
4946828
4946755
-
Arg
ACG
[Ensembl]
¡û
>C161049814
CP013023
Bacillota
Paenibacillus bovis BD3526 [CP013023]
4697018
4696942
-
Arg
ACG
[Ensembl]
¡û
>W1610163959
FAUP01000008
Bacillota
Paenibacillus senegalimassiliensis SIT18 [FAUP]
3553
3477
-
Arg
ACG
[ENA]
¡û
>W1610163999
FAUP01000017
Bacillota
Paenibacillus senegalimassiliensis SIT18 [FAUP]
964
1039
+
Arg
ACG
[ENA]
¡û
>W1610164022
FAUQ01000015
Bacillota
Paenibacillus rubinfantis MT18 [FAUQ]
972
1048
+
Arg
ACG
[ENA]
¡û
>W1610164066
FAUQ01000023
Bacillota
Paenibacillus rubinfantis MT18 [FAUQ]
1322683
1322608
-
Arg
ACG
[ENA]
¡û
>W1610207083
FCOQ01000009
Bacillota
Paenibacillus phocaensis MT24 [FCOQ]
451155
451079
-
Arg
ACG
[ENA]
¡û
>W1610207118
FCOQ01000018
Bacillota
Paenibacillus phocaensis MT24 [FCOQ]
86
161
+
Arg
ACG
[ENA]
¡û
>W1610871086
LRAC01000012
Bacillota
Paenibacillus sp. DMB5 [LRAC]
789
865
+
Arg
ACG
[ENA]
¡û
>W1610871110
LRAC01000017
Bacillota
Paenibacillus sp. DMB5 [LRAC]
144289
144213
-
Arg
ACG
[ENA]
¡û
>W1710165626
FAUP01000008
Bacillota
Paenibacillus senegalimassiliensis SIT18 [FAUP]
3553
3477
-
Arg
ACG
[ENA]
¡û
>W1710165666
FAUP01000017
Bacillota
Paenibacillus senegalimassiliensis SIT18 [FAUP]
964
1039
+
Arg
ACG
[ENA]
¡û
>W1710165689
FAUQ01000015
Bacillota
Paenibacillus rubinfantis MT18 [FAUQ]
972
1048
+
Arg
ACG
[ENA]
¡û
>W1710165733
FAUQ01000023
Bacillota
Paenibacillus rubinfantis MT18 [FAUQ]
1322683
1322608
-
Arg
ACG
[ENA]
¡û
>W1710207777
FCOQ01000009
Bacillota
Paenibacillus phocaensis MT24 [FCOQ]
451155
451079
-
Arg
ACG
[ENA]
¡û
>W1710207812
FCOQ01000018
Bacillota
Paenibacillus phocaensis MT24 [FCOQ]
86
161
+
Arg
ACG
[ENA]
¡û
>W1710514811
FNBG01000004
Bacillota
Fontibacillus panacisegetis [FNBG]
195539
195463
-
Arg
ACG
[ENA]
¡û
>W1710514831
FNBG01000006
Bacillota
Fontibacillus panacisegetis [FNBG]
172118
172042
-
Arg
ACG
[ENA]
¡û
>W1710514854
FNBG01000021
Bacillota
Fontibacillus panacisegetis [FNBG]
1250
1326
+
Arg
ACG
[ENA]
¡û
>W1710529224
FNNV01000002
Bacillota
Paenibacillus sp. CF384 [FNNV]
396800
396724
-
Arg
ACG
[ENA]
¡û
>W1710546733
FOCJ01000012
Bacillota
Paenibacillus sp. OV219 [FOCJ]
182494
182418
-
Arg
ACG
[ENA]
¡û
>W1710607397
FXAB01000012
Bacillota
Paenibacillus barengoltzii J6 [FXAB]
102211
102135
-
Arg
ACG
[ENA]
¡û
>W1710607408
FXAB01000030
Bacillota
Paenibacillus barengoltzii J6 [FXAB]
59642
59567
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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