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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183580 (45 seq.)
>W131108944
APGP01000044
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
59301
59225
-
Arg
TCT
[ENA]
¡û
>W131218303
ATXO01000007
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
43322
43246
-
Arg
TCT
[ENA]
¡û
>C006893
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
605848
605924
+
Arg
TCT
[Ensembl]
¡û
>WENV180014240
FPIC01110814
[FPIC] soil metagenome; Soil
68
144
+
Arg
TCT
[ENA]
¢þ
>WENV181226094
OFDK01000031
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
52291
52367
+
Arg
TCT
[ENA]
¢þ
>WENV181226280
OFDK01000581
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
3860
3784
-
Arg
TCT
[ENA]
¢þ
>WENV181285369
OFGS01000054
[OFGS] hot springs metagenome; Water and soil
14732
14808
+
Arg
TCT
[ENA]
¢þ
>WENV181408502
OGCH01004143
[OGCH] hot springs metagenome; hot springs
2494
2570
+
Arg
TCT
[ENA]
¢þ
>C191131121
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
2538809
2538733
-
Arg
TCT
-
¡û
>W09113834
ABYZ01000014
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
26341
26265
-
Arg
TCT
[ENA]
¡û
>C09100841
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
2735182
2735106
-
Arg
TCT
[Ensembl]
¡û
>W1911155344
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
2890164
2890088
-
Arg
TCT
[ENA]
¡û
>W1911244023
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
1579209
1579285
+
Arg
TCT
[ENA]
¡û
>W1911244084
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
2443250
2443174
-
Arg
TCT
[ENA]
¡û
>W1911244154
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
85236
85160
-
Arg
TCT
[ENA]
¡û
>W1911244161
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
131836
131912
+
Arg
TCT
[ENA]
¡û
>W1911244229
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2907946
2907870
-
Arg
TCT
[ENA]
¡û
>W1911572524
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
40879
40955
+
Arg
TCT
[ENA]
¡û
>W1911572607
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
782808
782732
-
Arg
TCT
[ENA]
¡û
>W1911572619
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
126713
126789
+
Arg
TCT
[ENA]
¡û
>W1810052258
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
2499219
2499295
+
Arg
TCT
[ENA]
¡û
>W1810071877
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
80832
80908
+
Arg
TCT
[ENA]
¡û
>W1810071926
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1113357
1113433
+
Arg
TCT
[ENA]
¡û
>W1810072009
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
708179
708103
-
Arg
TCT
[ENA]
¡û
>W1810368034
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
571350
571274
-
Arg
TCT
[ENA]
¡û
>C10103657
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
2382403
2382327
-
Arg
TCT
[Ensembl]
¡û
>C11105196
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
285568
285644
+
Arg
TCT
[Ensembl]
¡û
>C11105372
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
95206
95282
+
Arg
TCT
[Ensembl]
¡û
>C11105421
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
358403
358479
+
Arg
TCT
[Ensembl]
¡û
>C11105481
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
2376877
2376801
-
Arg
TCT
[Ensembl]
¡û
>C11105863
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
2316784
2316708
-
Arg
TCT
[Ensembl]
¡û
>W11139404
AEKB01000033
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
838
762
-
Arg
TCT
[ENA]
¡û
>W11139430
AEKC01000019
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
13806
13730
-
Arg
TCT
[ENA]
¡û
>W11139457
AEKD01000005
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
38965
39041
+
Arg
TCT
[ENA]
¡û
>W1511563986
LACN01000001
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
265
341
+
Arg
TCT
[ENA]
¡û
>W1511563994
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
1261169
1261093
-
Arg
TCT
[ENA]
¡û
>W1511564040
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
538188
538264
+
Arg
TCT
[ENA]
¡û
>W1710603729
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
566933
567009
+
Arg
TCT
[ENA]
¡û
>W1710603827
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
1890350
1890274
-
Arg
TCT
[ENA]
¡û
>W1710603912
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2843819
2843743
-
Arg
TCT
[ENA]
¡û
>W1710605077
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
1900688
1900612
-
Arg
TCT
[ENA]
¡û
>W1710609651
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
491300
491376
+
Arg
TCT
[ENA]
¡û
>W1710609735
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
487178
487102
-
Arg
TCT
[ENA]
¡û
>W1710609785
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
87266
87190
-
Arg
TCT
[ENA]
¡û
>W1710609831
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
80011
79935
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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