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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183661 (32 seq.)
>W131051989
AMYG01000045
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
5329
5253
-
Val
GAC
[ENA]
¡û
>W131051991
AMYG01000045
Bacillota
Thermoanaerobacter thermohydrosulfuricus WC1 [AMYG]
1879
1803
-
Val
CAC
[ENA]
¡û
>W131167574
ARDJ01000019
Bacillota
Thermoanaerobacter indiensis BSB-33 [ARDJ]
3842
3766
-
Val
GAC
[ENA]
¡û
>w019000
AATV01000072
Bacillota
Thermoanaerobacter sp. X514 X514 [AATV]
3926
4004
+
Val
GAC
[ENA]
¡û
>w010200
AAKQ01000056
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 [AAKQ]
6745
6667
-
Val
GAC
[ENA]
¡û
>W141092579
AVAF01000033
Bacillota
Thermoanaerobacter sp. A7A [AVAF]
3637
3561
-
Val
GAC
[ENA]
¡û
>WENV181226193
OFDK01000195
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
20438
20362
-
Val
GAC
[ENA]
¢þ
>C08010961
CP000923
Bacillota
Thermoanaerobacter sp. X514 [CP000923]
1359355
1359431
+
Val
GAC
[Ensembl]
¡û
>C08011047
CP000924
Bacillota
Thermoanaerobacter pseudethanolicus ATCC 33223 ATCC 33223; 39E [CP000924]
797778
797854
+
Val
GAC
[Ensembl]
¡û
>WENV170675655
LDZP01000184
[LDZP] terrestrial metagenome; oil reservoir sample I1
25537
25613
+
Val
GAC
[ENA]
¢þ
>WENV170676540
LDZS01001036
[LDZS] terrestrial metagenome; oil reservoir sample K3
132
208
+
Val
GAC
[ENA]
¢þ
>W09133556
ACPF01000103
Bacillota
Thermoanaerobacter sp. X513 [ACPF]
1904
1980
+
Val
GAC
[ENA]
¡û
>W09134107
ACQZ01000001
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [ACQZ]
57161
57085
-
Val
GAC
[ENA]
¡û
>W09135889
ACXP01000056
Bacillota
Thermoanaerobacter sp. X561 [ACXP]
4167
4243
+
Val
GAC
[ENA]
¡û
>C191108131
CP033580
Bacillota
Thermoanaerobacter ethanolicus JW 200 [CP033580]
2227813
2227737
-
Val
GAC
-
¡û
>C151045325
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
1543505
1543429
-
Val
GAC
[Ensembl]
¡û
>W10105918
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
19196
19272
+
Val
GAC
[ENA]
¡û
>W10120481
ADXD01000021
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
19236
19312
+
Val
GAC
[ENA]
¡û
>W10120483
ADXD01000021
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
22686
22762
+
Val
CAC
[ENA]
¡û
>W11108241
ACXY01000007
Bacillota
Thermoanaerobacter ethanolicus CCSD1 [ACXY]
19196
19272
+
Val
GAC
[ENA]
¡û
>W1511275087
JOOI01000001
Bacillota
Thermoanaerobacter sp. YS13 [JOOI]
936693
936617
-
Val
GAC
[ENA]
¡û
>C11122474
CP002466
Bacillota
Thermoanaerobacter brockii subsp. finnii Ako-1 [CP002466]
789972
790048
+
Val
GAC
[Ensembl]
¡û
>C11122736
CP002210
Bacillota
Thermoanaerobacter sp. X513 [CP002210]
1555027
1554951
-
Val
GAC
[Ensembl]
¡û
>C11123260
CP002991
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [CP002991]
1676361
1676285
-
Val
GAC
[Ensembl]
¡û
>W11127090
ADXD01000021
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
19236
19312
+
Val
GAC
[ENA]
¡û
>W11127092
ADXD01000021
Bacillota
Thermoanaerobacter wiegelii Rt8.B1 [ADXD]
22686
22762
+
Val
CAC
[ENA]
¡û
>W11152656
AEYS01000013
Bacillota
Thermoanaerobacter ethanolicus JW 200 [AEYS]
35846
35770
-
Val
GAC
[ENA]
¡û
>W121068102
AJUD01000009
Bacillota
Thermoanaerobacter siderophilus SR4 [AJUD]
63559
63635
+
Val
GAC
[ENA]
¡û
>W1610612287
LGEO01000021
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
25537
25613
+
Val
GAC
[ENA]
¡û
>W1710515329
FNBS01000039
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FNBS]
19336
19412
+
Val
GAC
[ENA]
¡û
>W1710560368
FONI01000019
Bacillota
Thermoanaerobacter thermohydrosulfuricus [FONI]
19238
19314
+
Val
GAC
[ENA]
¡û
>W1710733793
LGEO01000021
Bacillota
Thermoanaerobacter thermocopriae [LGEO]
25537
25613
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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