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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183736 (38 seq.)
>W1710897607
LNHZ01000001
Gammaproteobacteria
Citrobacter sp. 50677481 [LNHZ]
271392
271318
-
Arg
TCT
[ENA]
¡û
>W1710946126
LORU01000001
Gammaproteobacteria
Citrobacter amalonaticus [LORU]
3214882
3214958
+
Arg
TCT
[ENA]
¡û
>W1712071430
NGRA01000001
Gammaproteobacteria
Citrobacter amalonaticus [NGRA]
1291591
1291515
-
Arg
TCT
[ENA]
¡û
>WENV180497486
OCAE01003252
[OCAE] human gut metagenome; faeces
1766
1842
+
Arg
TCT
[ENA]
¢þ
>WENV182402197
OIES01001651
[OIES] human gut metagenome; human gut
4915
4839
-
Arg
TCT
[ENA]
¢þ
>WENV182952483
OKVW01001306
[OKVW] human gut metagenome; human gut
4902
4826
-
Arg
TCT
[ENA]
¢þ
>WENV183023145
OLFS01000177
[OLFS] human gut metagenome; faeces
1550
1626
+
Arg
TCT
[ENA]
¢þ
>WENV183534214
OOAE01028380
[OOAE] human gut metagenome; human gut
510
586
+
Arg
TCT
[ENA]
¢þ
>WENV183780791
PPYF01182367
[PPYF] human gut metagenome; stool from patient with Crohn's disease
307
383
+
Arg
TCT
[ENA]
¢þ
>WENV170002118
AGFT01119619
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
250
326
+
Arg
TCT
[ENA]
¢þ
>WENV170657360
JTFO01135257
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
293
217
-
Arg
TCT
[ENA]
¢þ
>C181071282
CP022695
Gammaproteobacteria
Citrobacter farmeri AUSMDU00008141 [CP022695]
1424746
1424822
+
Arg
TCT
-
¡û
>C181122423
CP025757
Gammaproteobacteria
Citrobacter freundii complex sp. CFNIH2 [CP025757]
2466789
2466713
-
Arg
TCT
-
¡û
>C181129150
CP026216
Gammaproteobacteria
Citrobacter sp. CFNIH10 [CP026216]
2656433
2656509
+
Arg
TCT
-
¡û
>C181218140
LT556084
Gammaproteobacteria
Citrobacter amalonaticus 86 [LT556084]
4133484
4133408
-
Arg
TCT
-
¡û
>C181218185
LT556085
Gammaproteobacteria
Citrobacter amalonaticus 92 [LT556085]
2754377
2754453
+
Arg
TCT
-
¡û
>C191182922
CP040805
Gammaproteobacteria
Escherichia fergusonii EFCF056 [CP040805]
3198479
3198403
-
Arg
TCT
-
¡û
>W141712371
JMQQ01000021
Gammaproteobacteria
Citrobacter amalonaticus [JMQQ]
67155
67231
+
Arg
TCT
[ENA]
¡û
>W141714457
JMUK01000020
Gammaproteobacteria
Citrobacter sp. MGH 55 [JMUK]
586658
586582
-
Arg
TCT
[ENA]
¡û
>C09105899
CU928158
Gammaproteobacteria
Escherichia fergusonii ATCC 35469 ATCC 35469T [CU928158]
590549
590625
+
Arg
TCT
[Ensembl]
¡û
>W1810321599
PUBX01000020
Gammaproteobacteria
Escherichia fergusonii YH17132 [PUBX]
55818
55742
-
Arg
TCT
[ENA]
¡û
>W1510011766
BBMX01000008
Gammaproteobacteria
Citrobacter farmeri GTC 1319 [BBMX]
224205
224129
-
Arg
TCT
[ENA]
¡û
>W1510011991
BBNA01000073
Gammaproteobacteria
Citrobacter rodentium NBRC 105723 [BBNA]
8126
8202
+
Arg
TCT
[ENA]
¡û
>W1510078678
CDQV01000277
Gammaproteobacteria
Citrobacter amalonaticus 3e8A [CDQV]
1996
1920
-
Arg
TCT
[ENA]
¡û
>W1510078890
CDQX01000152
Gammaproteobacteria
Citrobacter amalonaticus 3e8B [CDQX]
16377
16453
+
Arg
TCT
[ENA]
¡û
>C10103968
FN543502
Gammaproteobacteria
Citrobacter rodentium ICC168 [FN543502]
625075
625151
+
Arg
TCT
[Ensembl]
¡û
>WENV11102190
AGFT01119619
[AGFT] ant fungus garden metagenome; Atta colombica fungus garden bottom
250
326
+
Arg
TCT
[ENA]
¡û
>W1510769231
JAQB01000020
Gammaproteobacteria
Citrobacter sp. JT3 [JAQB]
262375
262299
-
Arg
TCT
[ENA]
¡û
>W1511512547
JXUN01000098
Gammaproteobacteria
Citrobacter rodentium ATCC 51459 [JXUN]
40417
40493
+
Arg
TCT
[ENA]
¡û
>W1511555391
JZWP01000100
Gammaproteobacteria
Escherichia fergusonii GTA-1504-5-RBA-P2 [JZWP]
4143
4067
-
Arg
TCT
[ENA]
¡û
>W1511589057
LBDB01000002
Gammaproteobacteria
Vibrio parahaemolyticus Vp103 [LBDB]
510058
509982
-
Arg
TCT
[ENA]
¡û
>W1511621039
LCUL01000016
Gammaproteobacteria
Vibrio parahaemolyticus Vp152 [LCUL]
510048
509972
-
Arg
TCT
[ENA]
¡û
>C161066430
CP014070
Gammaproteobacteria
Citrobacter amalonaticus FDAARGOS_165 [CP014070]
4209623
4209547
-
Arg
TCT
-
¡û
>W1610627932
LIFT01000002
Gammaproteobacteria
Citrobacter sp. CtB7.12 [LIFT]
208999
209075
+
Arg
TCT
[ENA]
¡û
>W1610758011
LNHZ01000001
Gammaproteobacteria
Citrobacter sp. 50677481 [LNHZ]
271392
271318
-
Arg
TCT
[ENA]
¡û
>W1610801996
LORU01000001
Gammaproteobacteria
Citrobacter amalonaticus [LORU]
3214882
3214958
+
Arg
TCT
[ENA]
¡û
>W1710555901
FOJV01000002
Gammaproteobacteria
Citrobacter amalonaticus NLAE-zl-C269 [FOJV]
325204
325128
-
Arg
TCT
[ENA]
¡û
>W1710759059
LIFT01000002
Gammaproteobacteria
Citrobacter sp. CtB7.12 [LIFT]
208999
209075
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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