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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183784 (109 seq.)
>W1712080439
NGZL01000012
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
35319
35395
+
Arg
ACG
[ENA]
¡û
>W1712080441
NGZL01000012
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
35598
35674
+
Arg
ACG
[ENA]
¡û
>C171101104
CP019936
Gammaproteobacteria
Chromatiaceae bacterium 2141T.STBD.0c.01a [CP019936]
3652070
3651994
-
Arg
ACG
-
¡û
>W131109253
APHR01000037
Gammaproteobacteria
Methylophaga lonarensis MPL [APHR]
5147
5071
-
Arg
ACG
[ENA]
¡û
>W131169972
ARFE01000002
Gammaproteobacteria
Kangiella aquimarina DSM 16071 [ARFE]
1357845
1357921
+
Arg
ACG
[ENA]
¡û
>W131221868
AUAV01000004
Gammaproteobacteria
Glaciecola pallidula DSM 14239 = ACAM 615 [AUAV]
103115
103039
-
Arg
ACG
[ENA]
¡û
>W131221869
AUAV01000004
Gammaproteobacteria
Glaciecola pallidula DSM 14239 = ACAM 615 [AUAV]
102968
102892
-
Arg
ACG
[ENA]
¡û
>C015880
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
3642221
3642145
-
Arg
ACG
[Ensembl]
¡û
>C015881
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
3642097
3642021
-
Arg
ACG
[Ensembl]
¡û
>C022973
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3567745
3567669
-
Arg
ACG
[Ensembl]
¡û
>C022975
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3567465
3567389
-
Arg
ACG
[Ensembl]
¡û
>C023293
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3176667
3176591
-
Arg
ACG
[Ensembl]
¡û
>C023295
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3176384
3176308
-
Arg
ACG
[Ensembl]
¡û
>C023298
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3175962
3175886
-
Arg
ACG
[Ensembl]
¡û
>w022858
AAWY01000011
Gammaproteobacteria
Shewanella putrefaciens 200 [AAWY]
7372
7294
-
Arg
ACG
[ENA]
¡û
>WENV180311966
OBJT01711444
[OBJT] soil metagenome; soil
80
4
-
Arg
ACG
[ENA]
¢þ
>WENV180347006
OBLN01499074
[OBLN] sediment metagenome; sediment
64
140
+
Arg
ACG
[ENA]
¢þ
>WENV181163334
OEIO01230063
[OEIO] marine metagenome; sea ice
78
154
+
Arg
ACG
[ENA]
¢þ
>WENV181322155
OFKP01012712
[OFKP] marine metagenome; sea ice
88
164
+
Arg
ACG
[ENA]
¢þ
>W141223722
BAEK01000038
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
102975
102899
-
Arg
ACG
[ENA]
¡û
>W141223723
BAEK01000038
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
102852
102776
-
Arg
ACG
[ENA]
¡û
>W141223775
BAEM01000042
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
100205
100129
-
Arg
ACG
[ENA]
¡û
>W141223776
BAEM01000042
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
100082
100006
-
Arg
ACG
[ENA]
¡û
>W141223922
BAEP01000062
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
99278
99202
-
Arg
ACG
[ENA]
¡û
>W141223923
BAEP01000062
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
99153
99077
-
Arg
ACG
[ENA]
¡û
>W141223975
BAEQ01000053
Gammaproteobacteria
Glaciecola pallidula DSM 14239 = ACAM 615 [BAEQ]
13689
13765
+
Arg
ACG
[ENA]
¡û
>W141223976
BAEQ01000053
Gammaproteobacteria
Glaciecola pallidula DSM 14239 = ACAM 615 [BAEQ]
13836
13912
+
Arg
ACG
[ENA]
¡û
>W141224003
BAER01000058
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
26232
26156
-
Arg
ACG
[ENA]
¡û
>W141224004
BAER01000058
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
26108
26032
-
Arg
ACG
[ENA]
¡û
>WENV182541929
OJAV01000023
[OJAV] seawater metagenome; Sea water
24288
24212
-
Arg
ACG
[ENA]
¢þ
>WENV182542325
OJAY01000072
[OJAY] seawater metagenome; Sea water
37844
37920
+
Arg
ACG
[ENA]
¢þ
>WENV182547026
OJBR01000186
[OJBR] seawater metagenome; Sea water
20848
20772
-
Arg
ACG
[ENA]
¢þ
>WENV182552390
OJCK01000009
[OJCK] seawater metagenome; Sea water
159211
159287
+
Arg
ACG
[ENA]
¢þ
>WENV182556741
OJDH01000027
[OJDH] seawater metagenome; Sea water
45304
45380
+
Arg
ACG
[ENA]
¢þ
>WENV182556742
OJDH01000027
[OJDH] seawater metagenome; Sea water
45428
45504
+
Arg
ACG
[ENA]
¢þ
>WENV182557007
OJDI01000248
[OJDI] seawater metagenome; Sea water
5
81
+
Arg
ACG
[ENA]
¢þ
>WENV182568329
OJET01001775
[OJET] seawater metagenome; Sea water
1109
1033
-
Arg
ACG
[ENA]
¢þ
>WENV182571030
OJFG01000069
[OJFG] seawater metagenome; Sea water
46294
46370
+
Arg
ACG
[ENA]
¢þ
>WENV182575596
OJFV01000249
[OJFV] seawater metagenome; Sea water
3389
3465
+
Arg
ACG
[ENA]
¢þ
>WENV182575597
OJFV01000249
[OJFV] seawater metagenome; Sea water
3513
3589
+
Arg
ACG
[ENA]
¢þ
>WENV182575896
OJFX01000198
[OJFX] seawater metagenome; Sea water
20868
20792
-
Arg
ACG
[ENA]
¢þ
>WENV182584319
OJHG01000005
[OJHG] seawater metagenome; Sea water
149720
149796
+
Arg
ACG
[ENA]
¢þ
>WENV182588719
OJHW01008811
[OJHW] seawater metagenome; Sea water
278
202
-
Arg
ACG
[ENA]
¢þ
>WENV182588720
OJHW01008811
[OJHW] seawater metagenome; Sea water
156
80
-
Arg
ACG
[ENA]
¢þ
>WENV183055240
OLGX01000284
[OLGX] seawater metagenome; Sea water
1708
1784
+
Arg
ACG
[ENA]
¢þ
>WENV183055422
OLHB01005401
[OLHB] seawater metagenome; Sea water
358
434
+
Arg
ACG
[ENA]
¢þ
>WENV183057265
OLHL01000088
[OLHL] seawater metagenome; Sea water
26018
25942
-
Arg
ACG
[ENA]
¢þ
>WENV183615031
OOEA01033055
[OOEA] marine metagenome; sea ice
190
114
-
Arg
ACG
[ENA]
¢þ
>WENV183615875
OOEC01000134
[OOEC] marine metagenome; sea ice
9600
9524
-
Arg
ACG
[ENA]
¢þ
>WENV183621000
OOFT01002135
[OOFT] marine metagenome; sea ice
328
404
+
Arg
ACG
[ENA]
¢þ
>WENV183621001
OOFT01002135
[OOFT] marine metagenome; sea ice
427
503
+
Arg
ACG
[ENA]
¢þ
>WENV183621420
OOFU01000622
[OOFU] marine metagenome; sea ice
5398
5322
-
Arg
ACG
[ENA]
¢þ
>WENV183621421
OOFU01000622
[OOFU] marine metagenome; sea ice
5261
5185
-
Arg
ACG
[ENA]
¢þ
>WENV183622601
OOFW01000022
[OOFW] marine metagenome; sea ice
6569
6645
+
Arg
ACG
[ENA]
¢þ
>WENV183622602
OOFW01000022
[OOFW] marine metagenome; sea ice
6794
6870
+
Arg
ACG
[ENA]
¢þ
>WENV183622726
OOFW01003437
[OOFW] marine metagenome; sea ice
107
183
+
Arg
ACG
[ENA]
¢þ
>WENV183622953
OOFW01061399
[OOFW] marine metagenome; sea ice
219
143
-
Arg
ACG
[ENA]
¢þ
>WENV183623379
OOFY01002821
[OOFY] marine metagenome; sea ice
134
210
+
Arg
ACG
[ENA]
¢þ
>WENV183624256
OOGD01000024
[OOGD] marine metagenome; sea ice
25094
25018
-
Arg
ACG
[ENA]
¢þ
>WENV183624257
OOGD01000024
[OOGD] marine metagenome; sea ice
24957
24881
-
Arg
ACG
[ENA]
¢þ
>WENV183628457
OOGN01055828
[OOGN] marine metagenome; sea ice
220
144
-
Arg
ACG
[ENA]
¢þ
>WENV183630709
OOGU01000729
[OOGU] marine metagenome; sea ice
1288
1364
+
Arg
ACG
[ENA]
¢þ
>WENV170980452
MWSA01003141
[MWSA] mollusc metagenome; gill 40 cm from animal A
5
81
+
Arg
ACG
[ENA]
¢þ
>WENV170980521
MWSB01002770
[MWSB] mollusc metagenome; gill 31 cm from animal A
5
81
+
Arg
ACG
[ENA]
¢þ
>WENV170980534
MWSC01000033
[MWSC] mollusc metagenome; gill 70 cm from animal B
865
789
-
Arg
ACG
[ENA]
¢þ
>WENV170980607
MWSD01000009
[MWSD] mollusc metagenome; gill 40 cm from animal B
37300
37376
+
Arg
ACG
[ENA]
¢þ
>WENV170980697
MWSE01000057
[MWSE] mollusc metagenome; gill 28 cm from animal B
15032
14956
-
Arg
ACG
[ENA]
¢þ
>C181113466
CP025120
Gammaproteobacteria
Kangiella profundi FT102 [CP025120]
1428951
1428875
-
Arg
ACG
-
¡û
>C191015576
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
23407
23331
-
Arg
ACG
-
¡û
>C191015578
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
23193
23117
-
Arg
ACG
-
¡û
>C191015579
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
23073
22997
-
Arg
ACG
-
¡û
>C191015580
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
22966
22890
-
Arg
ACG
-
¡û
>C191187088
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3337284
3337208
-
Arg
ACG
-
¡û
>C191187089
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3337182
3337106
-
Arg
ACG
-
¡û
>C191187090
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3337064
3336988
-
Arg
ACG
-
¡û
>C191187091
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3336963
3336887
-
Arg
ACG
-
¡û
>C191187092
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3336855
3336779
-
Arg
ACG
-
¡û
>C191187093
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3336747
3336671
-
Arg
ACG
-
¡û
>C191187094
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3336648
3336572
-
Arg
ACG
-
¡û
>C191187096
CP041151
Gammaproteobacteria
Shewanella sp. SNU WT4 [CP041151]
3336427
3336351
-
Arg
ACG
-
¡û
>C191205228
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3515429
3515505
+
Arg
ACG
-
¡û
>C191205230
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3515708
3515784
+
Arg
ACG
-
¡û
>W09103766
AAKP01000006
Gammaproteobacteria
Pseudoalteromonas atlantica T6c [AAKP] T6c [AAKP]
23266
23190
-
Arg
ACG
[ENA]
¡û
>W09103920
AALB01000025
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
1805
1729
-
Arg
ACG
[ENA]
¡û
>W09103922
AALB01000025
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
1522
1446
-
Arg
ACG
[ENA]
¡û
>W09103925
AALB01000025
Gammaproteobacteria
Shewanella putrefaciens CN-32 [AALB]
1100
1024
-
Arg
ACG
[ENA]
¡û
>W1910644983
LVCY01000002
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
205720
205644
-
Arg
ACG
[ENA]
¡û
>W1910644985
LVCY01000002
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
205506
205430
-
Arg
ACG
[ENA]
¡û
>W1910644986
LVCY01000002
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
205386
205310
-
Arg
ACG
[ENA]
¡û
>W1910644987
LVCY01000002
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
205279
205203
-
Arg
ACG
[ENA]
¡û
>W1810073439
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
156562
156486
-
Arg
ACG
[ENA]
¡û
>W1810073441
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
156283
156207
-
Arg
ACG
[ENA]
¡û
>W1810155426
PJAR01000044
Gammaproteobacteria
Glaciecola sp. 33A [PJAR]
116333
116409
+
Arg
ACG
[ENA]
¡û
>W1810155427
PJAR01000044
Gammaproteobacteria
Glaciecola sp. 33A [PJAR]
116444
116520
+
Arg
ACG
[ENA]
¡û
>W1810721160
QNRT01000004
Gammaproteobacteria
Arenicella xantha DSM 24032 [QNRT]
286898
286974
+
Arg
ACG
[ENA]
¡û
>C11109452
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
1529951
1530027
+
Arg
ACG
[Ensembl]
¡û
>C11109453
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
1530074
1530150
+
Arg
ACG
[Ensembl]
¡û
>W1511348340
JRKG01000016
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
720493
720569
+
Arg
ACG
[ENA]
¡û
>W1511348341
JRKG01000016
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
720617
720693
+
Arg
ACG
[ENA]
¡û
>C11121564
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
3250867
3250791
-
Arg
ACG
[Ensembl]
¡û
>C121004915
CP003060
Gammaproteobacteria
Glaciecola nitratireducens FR1064 [CP003060]
2570646
2570570
-
Arg
ACG
[Ensembl]
¡û
>C121004916
CP003060
Gammaproteobacteria
Glaciecola nitratireducens FR1064 [CP003060]
2570546
2570470
-
Arg
ACG
[Ensembl]
¡û
>C121011843
CP003380
Gammaproteobacteria
Methylophaga frappieri JAM7 [CP003380]
223214
223290
+
Arg
ACG
[Ensembl]
¡û
>W1610072066
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
162805
162881
+
Arg
ACG
[ENA]
¡û
>W1610072068
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
163088
163164
+
Arg
ACG
[ENA]
¡û
>W1610072071
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
163510
163586
+
Arg
ACG
[ENA]
¡û
>W1710069268
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
162805
162881
+
Arg
ACG
[ENA]
¡û
>W1710069270
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
163088
163164
+
Arg
ACG
[ENA]
¡û
>W1710069273
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
163510
163586
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK