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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183787 (11 seq.)
>WENV181228639
OFEH01000626
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
758
831
+
Arg
TCT
[ENA]
¢þ
>WENV181228743
OFEH01002535
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
152
79
-
Arg
TCT
[ENA]
¢þ
>WENV181407583
OGCG01044268
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
703
629
-
Arg
TCT
[ENA]
¢þ
>C08005570
CP001130
Aquificota
Hydrogenobaculum sp. Y04AAS1 [CP001130]
127010
127083
+
Arg
TCT
[Ensembl]
¡û
>W09107124
ABFI01000004
Aquificota
Hydrogenobaculum sp. Y04AAS1 [ABFI]
38895
38822
-
Arg
TCT
[ENA]
¡û
>C151003639
CP002726
Aquificota
Hydrogenobaculum sp. 3684 [CP002726]
130475
130548
+
Arg
TCT
[Ensembl]
¡û
>C151003683
CP002809
Aquificota
Hydrogenobaculum sp. SHO [CP002809]
130511
130584
+
Arg
TCT
[Ensembl]
¡û
>W10115185
ADJO01000002
Aquificota
Hydrogenobaculum sp. SN [ADJO]
167611
167684
+
Arg
TCT
[ENA]
¡û
>W11118771
ADJO01000002
Aquificota
Hydrogenobaculum sp. SN [ADJO]
167611
167684
+
Arg
TCT
[ENA]
¡û
>C131013379
CP004347
Aquificota
Hydrogenobaculum sp. HO [CP004347]
130510
130583
+
Arg
TCT
[Ensembl]
¡û
>C131013690
CP004390
Aquificota
Hydrogenobaculum sp. SN [CP004390]
130472
130545
+
Arg
TCT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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