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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.183839 (56 seq.)
>W131027615
AJAM01000004
Bacillota
Enterococcus casseliflavus ATCC 49996 [AJAM]
439318
439243
-
Arg
TCT
[ENA]
¡û
>W131201123
ASVX01000001
Bacillota
Enterococcus casseliflavus ATCC 49996 [ASVX]
1293390
1293315
-
Arg
TCT
[ENA]
¡û
>W131208692
ATIC01000033
Bacillota
Enterococcus casseliflavus 14-MB-W-14 [ATIC]
176949
177024
+
Arg
TCT
[ENA]
¡û
>W131208711
ATID01000016
Bacillota
Enterococcus faecium 13.SD.W.09 [ATID]
171834
171909
+
Arg
TCT
[ENA]
¡û
>W131209113
ATIM01000049
Bacillota
Enterococcus faecalis 06-MB-DW-09 [ATIM]
207898
207973
+
Arg
TCT
[ENA]
¡û
>W131218171
ATXL01000008
Bacillota
Bavariicoccus seileri DSM 19936 [ATXL]
2083
2008
-
Arg
TCT
[ENA]
¡û
>W1711460410
MJEF01000009
Bacillota
Enterococcus casseliflavus [MJEF]
19303
19228
-
Arg
TCT
[ENA]
¡û
>W1711460476
MJEG01000005
Bacillota
Enterococcus casseliflavus [MJEG]
79222
79147
-
Arg
TCT
[ENA]
¡û
>W1711738481
MUBE01000026
Bacillota
Enterococcus casseliflavus [MUBE]
46083
46158
+
Arg
TCT
[ENA]
¡û
>W1712067636
NGLC01000001
Bacillota
Enterococcus sp. 5B3_DIV0040 [NGLC]
1896087
1896162
+
Arg
TCT
[ENA]
¡û
>W1712067817
NGLF01000002
Bacillota
Enterococcus sp. 4E1_DIV0656 [NGLF]
442794
442869
+
Arg
TCT
[ENA]
¡û
>W1712067925
NGLH01000001
Bacillota
Enterococcus sp. 3G6_DIV0642 [NGLH]
1406557
1406482
-
Arg
TCT
[ENA]
¡û
>W1712068047
NGLJ01000002
Bacillota
Enterococcus sp. 3C8_DIV0646 [NGLJ]
156069
155994
-
Arg
TCT
[ENA]
¡û
>W1712068049
NGLK01000001
Bacillota
Enterococcus sp. 3C7_DIV0644 [NGLK]
469806
469881
+
Arg
TCT
[ENA]
¡û
>W1712068147
NGLL01000001
Bacillota
Enterococcus sp. 2G9_DIV0600 [NGLL]
1329236
1329161
-
Arg
TCT
[ENA]
¡û
>W1712068207
NGLN01000001
Bacillota
Enterococcus sp. 2F9_DIV0599 [NGLN]
158057
158132
+
Arg
TCT
[ENA]
¡û
>W1712069284
NGMG01000001
Bacillota
Enterococcus faecium [NGMG]
1382372
1382447
+
Arg
TCT
[ENA]
¡û
>W1712097071
NIBN01000001
Bacillota
Enterococcus sp. 6D12_DIV0197 [NIBN]
1709730
1709655
-
Arg
TCT
[ENA]
¡û
>W1712097160
NIBP01000001
Bacillota
Enterococcus sp. 8E11_MSG4843 [NIBP]
162564
162489
-
Arg
TCT
[ENA]
¡û
>WENV180153041
OAUR01000255
[OAUR] human gut metagenome; faeces
10678
10753
+
Arg
TCT
[ENA]
¢þ
>WENV180167884
OAVP01000786
[OAVP] human gut metagenome; faeces
9846
9771
-
Arg
TCT
[ENA]
¢þ
>WENV180448737
OBXF01000250
[OBXF] human gut metagenome; faeces
51795
51720
-
Arg
TCT
[ENA]
¢þ
>WENV180457616
OBXV01000001
[OBXV] human gut metagenome; faeces
495711
495786
+
Arg
TCT
[ENA]
¢þ
>WENV180503674
OCAN01000008
[OCAN] human gut metagenome; faeces
300354
300279
-
Arg
TCT
[ENA]
¢þ
>W141105978
AVPC01002882
Bacillota
Enterococcus gallinarum EGD-AAK12 [AVPC]
186
111
-
Arg
TCT
[ENA]
¡û
>WENV182400106
OIEP01000734
[OIEP] human gut metagenome; human gut
111
36
-
Arg
TCT
[ENA]
¢þ
>WENV182404420
OIEU01023668
[OIEU] human gut metagenome; human gut
221
146
-
Arg
TCT
[ENA]
¢þ
>WENV182539243
OIXV01002425
[OIXV] human gut metagenome; faeces
14672
14747
+
Arg
TCT
[ENA]
¢þ
>WENV182601636
OJJJ01000153
[OJJJ] metagenome; faeces
12188
12113
-
Arg
TCT
[ENA]
¢þ
>WENV182613702
OJKA01006119
[OJKA] metagenome; faeces
2014
1939
-
Arg
TCT
[ENA]
¢þ
>WENV182949799
OKVQ01000175
[OKVQ] human gut metagenome; human gut
25539
25614
+
Arg
TCT
[ENA]
¢þ
>WENV183511296
OMJG01000013
[OMJG] food metagenome; Cotija cheese
120342
120417
+
Arg
TCT
[ENA]
¢þ
>C181083335
CP023515
Bacillota
Enterococcus sp. FDAARGOS_375 [CP023515]
66869
66944
+
Arg
TCT
-
¡û
>C181114771
CP025223
Bacillota
Enterococcus sp. CR-Ec1 [CP025223]
2268924
2268999
+
Arg
TCT
-
¡û
>C191094172
CP032739
Bacillota
Enterococcus casseliflavus EC-369 [CP032739]
2911100
2911175
+
Arg
TCT
-
¡û
>W09115319
ACAH01000016
Bacillota
Enterococcus casseliflavus EC30 [ACAH]
49024
48949
-
Arg
TCT
[ENA]
¡û
>W09115494
ACAL01000011
Bacillota
Enterococcus casseliflavus EC10 [ACAL]
15077
15002
-
Arg
TCT
[ENA]
¡û
>W09115641
ACAO01000013
Bacillota
Enterococcus casseliflavus EC20 [ACAO]
13242
13167
-
Arg
TCT
[ENA]
¡û
>W1910181697
BJMG01000001
Bacillota
Enterococcus casseliflavus NBRC 12256 [BJMG]
112026
112101
+
Arg
TCT
[ENA]
¡û
>W1810793552
QRJU01000003
Bacillota
Enterococcus casseliflavus AM17-31 [QRJU]
197946
198021
+
Arg
TCT
[ENA]
¡û
>W1810798121
QRMZ01000004
Bacillota
Enterococcus casseliflavus AF48-16 [QRMZ]
128460
128535
+
Arg
TCT
[ENA]
¡û
>C151006875
CP004856
Bacillota
Enterococcus casseliflavus EC20 [CP004856]
1372305
1372230
-
Arg
TCT
[Ensembl]
¡û
>W1510079518
CDRE01000338
Bacillota
Enterococcus casseliflavus 1a6A [CDRE]
403
328
-
Arg
TCT
[ENA]
¡û
>W11151170
AEWT01000016
Bacillota
Enterococcus casseliflavus ATCC 12755 [AEWT]
161334
161259
-
Arg
TCT
[ENA]
¡û
>C161066331
CP014067
Bacillota
Enterococcus gallinarum FDAARGOS_163 [CP014067]
3281516
3281591
+
Arg
TCT
[Ensembl]
¡û
>W121077319
AKCC01000001
Bacillota
Enterococcus casseliflavus EC20 [AKCC]
392215
392140
-
Arg
TCT
[ENA]
¡û
>W121086937
AKKS01000005
Bacillota
Enterococcus sp. C1 [AKKS]
189026
189101
+
Arg
TCT
[ENA]
¡û
>W1610066468
BCPT01000011
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
56290
56365
+
Arg
TCT
[ENA]
¡û
>W1610067255
BCQJ01000003
Bacillota
Enterococcus canis NBRC 100695 [BCQJ]
147691
147766
+
Arg
TCT
[ENA]
¡û
>WENV085450
BABC01009809
Gut microbiome of Human (healthy human sample In-B, Infant, Male)
528
606
+
Arg
TCT
[ENA]
>W1710063806
BCPT01000011
Bacillota
Enterococcus casseliflavus NBRC 100478 [BCPT]
56290
56365
+
Arg
TCT
[ENA]
¡û
>W1710064628
BCQJ01000003
Bacillota
Enterococcus canis NBRC 100695 [BCQJ]
147691
147766
+
Arg
TCT
[ENA]
¡û
>W1710520600
FNFS01000006
Bacillota
Enterococcus casseliflavus [FNFS]
67979
67904
-
Arg
TCT
[ENA]
¡û
>W1710559379
FOMP01000001
Bacillota
Enterococcus casseliflavus [FOMP]
112294
112369
+
Arg
TCT
[ENA]
¡û
>W1710659180
JXKH01000001
Bacillota
Enterococcus canis [JXKH]
551184
551259
+
Arg
TCT
[ENA]
¡û
>W1710659243
JXKK01000010
Bacillota
Enterococcus casseliflavus [JXKK]
83712
83637
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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